Tag metabolomics [at least 200 articles] Export

Recent papers classified by the tag metabolomics.

	Use of Randomized Sampling for Analysis of Metabolic Networks [My Copy] Journal of Biological Chemistry, Vol. 284, No. 9. (27 February 2009), pp. 5457-5461. by Jan Schellenberger, Bernhard Palsson posted to metabolomics fluxomics by abhishek_tiwari on 2009-11-06 02:51:35 as along with 2 people JeremyZucker cerca
	Toward metabolome-based 13C flux analysis: a universal tool for measuring in vivo metabolic activity [My Copy] Metabolomics (2007), pp. 129-157. by Nicola Zamboni posted to metabolomics fluxomics by abhishek_tiwari on 2009-11-06 02:48:08 as
	Fluxomics: mass spectrometry versus quantitative imaging [My Copy] Current Opinion in Plant Biology, Vol. 10, No. 3. (June 2007), pp. 323-330. by W. Wiechert, O. Schweissgut, H. Takanaga, W. Frommer posted to metabolomics fluxomics by abhishek_tiwari on 2009-11-06 02:46:45 as
	Hybrid Dynamic/Static Method for Large-Scale Simulation of Metabolism and its Implementation to the E-CELL System [My Copy] Metabolomics (2005), pp. 221-232. by Yoichi Nakayama posted to metabolomics by abhishek_tiwari on 2009-11-06 02:43:49 as
	In situ metabolic profiling of single cells by laser ablation electrospray ionization mass spectrometry. [My Copy] Analytical chemistry, Vol. 81, No. 20. (15 October 2009), pp. 8265-8271. by Bindesh Shrestha, Akos Vertes posted to metabolomics mass-spectrometry laser-ablation-electrospray-ionization by sjcockell on 2009-10-15 12:34:47 as
	Plant chemical genetics [My Copy] New Phytologist, Vol. 9999, No. 9999. (2009) by Peter McCourt, Darrell Desveaux posted to review plant metabolomics genetics by druvus on 2009-10-14 09:12:57 as along with 1 person natstreet
	Metabolic pathfinding using RPAIR annotation. [My Copy] Journal of molecular biology, Vol. 388, No. 2. (1 May 2009), pp. 390-414. by Karoline Faust, Didier Croes, Jacques van Helden posted to pathway motif metabolomics by druvus on 2009-10-12 17:12:22 as along with 1 person ptrobajo
	Reactome array: forging a link between metabolome and genome. [My Copy] Science (New York, N.Y.), Vol. 326, No. 5950. (9 October 2009), pp. 252-257. by Ana Beloqui, María-Eugenia E. Guazzaroni, Florencio Pazos, et al.José M. Vieites, Marta Godoy, Olga V. Golyshina, Tatyana N. Chernikova, Agnes Waliczek, Rafael Silva-Rocha, Yamal Al-Ramahi, Violetta La Cono, Carmen Mendez, José A. Salas, Roberto Solano, Michail M. Yakimov, Kenneth N. Timmis, Peter N. Golyshin, Manuel Ferrer posted to proteomics metabolomics genomics by brianb on 2009-10-09 15:37:08 as along with 8 people and 1 group kinestetika renatomilani leliavski michaelbarton abhishek_tiwari TRHvidsten ptrobajo gbloeb Shared Literature Resource of the Microbial Fitness Group - MPI Bremen
	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum. [My Copy] PLoS genetics, Vol. 4, No. 11. (28 November 2008), e1000282. by Christian Gieger, Ludwig Geistlinger, Elisabeth Altmaier, et al.Martin Hrabé de Angelis, Florian Kronenberg, Thomas Meitinger, Hans-Werner W. Mewes, H-Erich E. Wichmann, Klaus M. Weinberger, Jerzy Adamski, Thomas Illig, Karsten Suhre posted to wide study serum profiles metabolomics metabolite human genome genetics association by dswan on 2009-10-09 09:55:34 as along with 10 people and 1 group nicholso mrw34 Zephyrus guhjy xingxu jo_davies songpku reyez bertrandservin caseybrown Roswell Cancer Crosstalk
	Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns [My Copy] Genome Research, Vol. 19, No. 10. (October 2009), pp. 1872-1883. by Christoph Kaleta, LuÃs F. de Figueiredo, Stefan Schuster posted to metabolomics by TRHvidsten on 2009-10-02 13:05:47 as along with 3 people and 1 group schwartzjmc daveGerrard fpattyn Neuroblastoma
	Another load of metabolomics [My Copy] The Lancet Oncology, Vol. 4, No. 10. (October 2003), pp. 644-644. by J. Lee posted to metabolomics funny by dullhunk on 2009-10-01 14:46:57 as
	Combining Tissue Transcriptomics and Urine Metabolomics for Breast Cancer Biomarker Identification [My Copy] Bioinformatics (25 September 2009), btp558. by Hojung Nam, Bong C. Chung, Younghoon Kim, KiYoung Lee, Doheon Lee posted to metabolomics gene expression cancer by brianb on 2009-09-30 01:46:08 as along with 1 person neils
	Systems biology, metabolic modelling and metabolomics in drug discovery and development. [My Copy] Drug discovery today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092. by Douglas B. Kell posted to systems-biology modelling metabolomics by peterli on 2009-09-24 14:09:27 as along with 13 people and 2 groups flbarroso schwartzjmc egonw irenas nicklynch alexg dullhunk mhucka raiyar fishtank shikin alanrw gemmalholliday steinmetzlab GeneGo
	Current Progress in computational metabolomics [My Copy] Brief Bioinform, Vol. 8, No. 5. (1 September 2007), pp. 279-293. by David S. Wishart posted to review ontology metabolomics by druvus on 2009-09-21 14:55:34 as along with 2 people and 1 group guhjy alexg Bioinformatics
	Large-scale identification of genetic design strategies using local search [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Desmond S. Lun, Graham Rockwell, Nicholas J. Guido, et al.Michael Baym, Jonathan A. Kelner, Bonnie Berger, James E. Galagan, George M. Church posted to metabolomics by TRHvidsten on 2009-09-17 07:49:00 as along with 3 people and 1 group JeremyZucker reyez jjray Synthetic Biology
	Metabolism as means for hypoxia adaptation: metabolic profiling and flux balance analysis [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 91. by Jacob Feala, Laurence Coquin, Dan Zhou, Gabriel Haddad, Giovanni Paternostro, Andrew McCulloch posted to metabolomics by TRHvidsten on 2009-09-15 07:43:14 as along with 1 person abhishek_tiwari
	Human metabolic phenotype diversity and its association with diet and blood pressure. [My Copy] Nature, Vol. 453, No. 7193. (15 May 2008), pp. 396-400. by Elaine Holmes, Ruey Leng L. Loo, Jeremiah Stamler, et al.Magda Bictash, Ivan K. Yap, Queenie Chan, Tim Ebbels, Maria De Iorio, Ian J. Brown, Kirill A. Veselkov, Martha L. Daviglus, Hugo Kesteloot, Hirotsugu Ueshima, Liancheng Zhao, Jeremy K. Nicholson, Paul Elliott posted to metabolomics metabolism by peterli on 2009-09-09 13:41:52 as along with 3 people nicholso guhjy tmmurali
	integrOmics: an R package to unravel relationships between two omics datasets [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2855-2856. by Kim-Anh Le Cao, Ignacio Gonzalez, Sebastien Dejean posted to transcriptomics software proteomics omics metabolomics comparison bioinformatics by sebastien_vigneau on 2009-09-08 23:33:58 as along with 14 people dswan mayercd operon kshameer heliopais dolchan nuin ptrobajo rdiaz cassj brianb neils natstreet druvus
	Bayesian-based selection of metabolic objective functions [My Copy] Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 351-357. by Andrea L. Knorr, Rishi Jain, Ranjan Srivastava posted to systems-biology metabolomics metabolic-control-analysis metabolic insilico cell-biology bayesian by bertelsen on 2009-09-03 00:05:41 as
	Metabolic modeling: a tool of drug discovery in the post-genomic era. [My Copy] Drug discovery today, Vol. 7, No. 11. (1 June 2002), pp. 621-628. by Eberhard O. Voit posted to systems-biology review microarray metabolomics metabolic-control-analysis functional-genomics drug-discovery biochemical-systems-theory by bertelsen on 2009-09-01 18:17:11 as
	Modelling metabolic networks using power-laws and S-systems. [My Copy] Essays in biochemistry, Vol. 45 (2008), pp. 29-40. by Eberhard O. Voit posted to s-system review power-laws networks modelling metabolomics biochemical-systems-theory by bertelsen on 2009-09-01 15:12:04 as
	A comparison of variant theories of intact biochemical systems. II. Flux-oriented and metabolic control theories. [My Copy] Mathematical biosciences, Vol. 94, No. 2. (June 1989), pp. 195-238. by A. Sorribas, M. A. Savageau posted to review metabolomics comparison biochemical-systems-theory by bertelsen on 2009-09-01 14:58:27 as
	Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6386. by Janet Jansson, Ben Willing, Marianna Lucio, et al.Ages Fekete, Johan Dicksved, Jonas Halfvarson, Curt Tysk, Philippe Schmitt-Kopplin posted to metabolomics crohn by shikin on 2009-09-01 10:22:50 as along with 5 people samanthacooper pkonings frohike neils idoerg
	On Inner and Outer Descriptions of the Steady-State Flux Cone of a Metabolic Network [My Copy] Computational Methods in Systems Biology (2008), pp. 308-327. by Abdelhalim Larhlimi, Alexander Bockmayr posted to systems-biology steady-state pathway metabolomics constraint-based-modelling by bertelsen on 2009-08-31 15:13:06 as
	HMDB: the Human Metabolome Database. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by David S. Wishart, Dan Tzur, Craig Knox, et al.Roman Eisner, An Chi C. Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude A. Coutouly, Ian Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. Macinnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russ Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser posted to metabolomics human database by bertelsen on 2009-08-26 00:36:44 as along with 4 people ChrisEvelo dansullivanblk frohike massivemayhem
	Time-resolved metabolomics reveals metabolic modulation in rice foliage. [My Copy] BMC systems biology, Vol. 2 (2008) by Shigeru Sato, Masanori Arita, Tomoyoshi Soga, Takaaki Nishioka, Masaru Tomita posted to som rice plant metabolomics by rschulz on 2009-08-20 17:07:42 as
	The use of artificial neural networks to study fatty acids in neuropsychiatric disorders. [My Copy] BMC psychiatry, Vol. 8 Suppl 1 (2008) by Massimo Cocchi, Lucio Tonello, Sofia Tsaluchidu, Basant K. Puri posted to som psychology neurology metabolomics by rschulz on 2009-08-20 16:52:05 as
	Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants. [My Copy] Plant & cell physiology, Vol. 50, No. 1. (January 2009), pp. 37-47. by Yuji Sawada, Kenji Akiyama, Akane Sakata, et al.Ayuko Kuwahara, Hitomi Otsuki, Tetsuya Sakurai, Kazuki Saito, Masami Yokota Y. Hirai posted to som plant metabolomics by rschulz on 2009-08-20 16:45:21 as
	Experimental and analytical variation in human urine in 1H NMR spectroscopy-based metabolic phenotyping studies. [My Copy] Analytical chemistry, Vol. 79, No. 14. (15 July 2007), pp. 5204-5211. by Anthony D. Maher, Séverine F. Zirah, Elaine Holmes, Jeremy K. Nicholson posted to urine metabolomics by samanthacooper on 2009-08-17 17:43:10 as along with 2 people nicholso guhjy
	A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles. [My Copy] Plant physiology, Vol. 139, No. 3. (November 2005), pp. 1125-1137. by Yury Tikunov, Arjen Lommen, Ric H. de Vos, et al.Harrie A. Verhoeven, Raoul J. Bino, Robert D. Hall, Arnaud G. Bovy posted to metabolomics analysis by samanthacooper on 2009-08-17 17:41:57 as along with 3 people robert egonw BIBLIOma
	MouseCyc: a curated biochemical pathways database for the laboratory mouse [My Copy] Genome Biology, Vol. 10, No. 8. (14 August 2009), R84. by Alexei Evsikov, Mary Dolan, Michael Genrich, Emily Patek, Carol Bult posted to network metabolomics by druvus on 2009-08-17 07:19:35 as along with 2 people megraw ptrobajo
	Copy number variation influences gene expression and metabolic traits in mice. [My Copy] Human molecular genetics (31 July 2009), ddp360. by Luz D. Orozco, Shawn J. Cokus, Anatole Ghazalpour, et al.Leslie Ingram-Drake, Susanna Wang, Atila van Nas, Nam Che, Jesus A. Araujo, Matteo Pellegrini, Aldons J. Lusis posted to metabolomics expression cnv by pkonings on 2009-08-14 10:21:58 as along with 2 people memerman rdiaz
	Proposed minimum reporting standards for chemical analysis [My Copy] Metabolomics, Vol. 3, No. 3. (1 September 2007), pp. 211-221. by Lloyd Sumner, Alexander Amberg, Dave Barrett, et al.Michael Beale, Richard Beger, Clare Daykin, Teresa Fan, Oliver Fiehn, Royston Goodacre, Julian Griffin, Thomas Hankemeier, Nigel Hardy, James Harnly, Richard Higashi, Joachim Kopka, Andrew Lane, John Lindon, Philip Marriott, Andrew Nicholls, Michael Reily, John Thaden, Mark Viant posted to standards standard_reporting metabolomics functional_genomics by Vincent_Rouilly on 2009-08-13 11:40:02 as
	Bidirectionality and Compartmentation of Metabolic Fluxes Are Revealed in the Dynamics of Isotopomer Networks [My Copy] International Journal of Molecular Sciences, Vol. 10, No. 4. (17 April 2009), pp. 1697-1718. by David W. Schryer, Pearu Peterson, Toomas Paalme, Marko Vendelin posted to metabolomics systemsbiology by abhishek_tiwari on 2009-08-04 08:09:11 as
	A possibilistic framework for constraint-based metabolic flux analysis [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 79. by Francisco Llaneras, Antonio Sala, Jesus Pico posted to metabolomics systemsbiology by abhishek_tiwari on 2009-08-04 06:22:38 as
	A Systems Biology Approach to Investigating Apoptotic Stimuli as Effectors of Cell Metabolism: Practical Application of Top-Down Control Analysis to Attached Neurons [My Copy] International Journal of Molecular Sciences, Vol. 10, No. 2. (23 February 2009), pp. 702-722. by Mika B. Jekabsons posted to metabolomics systemsbiology by abhishek_tiwari on 2009-08-04 06:11:22 as
	Essential genes on metabolic maps. [My Copy] Current opinion in biotechnology, Vol. 17, No. 5. (13 October 2006), pp. 448-456. by S. Gerdes, R. Edwards, M. Kubal, M. Fonstein, R. Stevens, A. Osterman posted to essentiality metabolomics pathways target_prioritization by richardbickerton on 2009-07-30 12:34:22 as along with 2 people aswin westoll
	‘Metabolite-likeness’ as a criterion in the design and selection of pharmaceutical drug libraries [My Copy] Drug Discovery Today, Vol. 14, No. 1-2. (28 January 2009), pp. 31-40. by P. Dobson, Y. Patel, D. Kell posted to druglikeness metabolomics by richardbickerton on 2009-07-30 11:58:40 as along with 9 people mingzhi massivemayhem vpenelle jmuhlich lptolik pauldobson sschurer egonw dullhunk
	iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R69. by Christopher Henry, Jenifer Zinner, Matthew Cohoon, Rick Stevens posted to metabolomics by abhishek_tiwari on 2009-07-14 12:49:01 as along with 2 people JeremyZucker barriot
	c-Myc activates multiple metabolic networks to generate substrates for cell-cycle entry [My Copy] Oncogene, Vol. 28, No. 27. (18 May 2009), pp. 2485-2491. by F. Morrish, N. Isern, M. Sadilek, M. Jeffrey, D. M. Hockenbery posted to folate metabolomics myc by fpattyn to the group Neuroblastoma on 2009-07-09 13:41:55 as along with 2 people tibbitts renatomilani
	Integration of enzyme kinetic models and isotopomer distribution analysis for studies of in situ cell operation [My Copy] BMC Neuroscience, Vol. 7, No. Suppl 1. (2006), S7. by Vitaly Selivanov, Tatiana Sukhomlin, Josep Centelles, Paul Lee, Marta Cascante posted to metabolomics by abhishek_tiwari on 2009-07-08 18:08:03 as
	Metabolic networks in motion: 13C-based flux analysis [My Copy] Mol Syst Biol, Vol. 2 (14 November 2006) by Uwe Sauer posted to metabolomics by abhishek_tiwari on 2009-07-08 18:07:53 as along with 4 people and 1 group Sonix fishtank westoll JeremyZucker MetabolicModeling
	Flux balance analysis of biological systems: applications and challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 435-449. by Karthik Raman, Nagasuma Chandra posted to metabolomics systemsbiology by abhishek_tiwari on 2009-07-08 18:03:05 as along with 7 people kshameer sobolevnrm michaelbarton JeremyZucker fgibson TRHvidsten yujiangwang
	Distinguishing enzymes using metabolome data for the hybrid dynamic/static method [My Copy] Theoretical Biology and Medical Modelling, Vol. 4, No. 1. (20 May 2007), 19. by Nobuyoshi Ishii, Yoichi Nakayama, Masaru Tomita posted to metabolomics systemsbiology by abhishek_tiwari on 2009-07-08 18:01:40 as
	Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 18. (15 September 2008), pp. 2044-2050. by Markus W. Covert, Nan Xiao, Tiffany J. Chen, Jonathan R. Karr posted to metabolomics systemsbiology by abhishek_tiwari on 2009-07-08 17:57:35 as along with 6 people schwartzjmc pjmaybank kalvala guhjy Ema nuin
	Hybrid dynamic/static method for large-scale simulation of metabolism [My Copy] Theoretical Biology and Medical Modelling, Vol. 2, No. 1. (2005), 42. by Katsuyuki Yugi, Yoichi Nakayama, Ayako Kinoshita, Masaru Tomita posted to metabolomics systemsbiology by abhishek_tiwari on 2009-07-08 17:51:51 as along with 1 person ynaito
	Steady-State Kinetic Modeling Constrains Cellular Resting States and Dynamic Behavior [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (6 March 2009), e1000298. by Jeremy E. Purvis, Ravi Radhakrishnan, Scott L. Diamond posted to metabolomics systemsbiology by abhishek_tiwari on 2009-07-08 17:43:19 as along with 3 people schwartzjmc ulfliebal dolchan
	Acid–base-driven matrix-assisted mass spectrometry for targeted metabolomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 25. (23 June 2009), pp. 10092-10096. by Rohit Shroff, Lubomír Rulíšek, Jan Doubský, Aleš Svatoš posted to metabolomics by JingweiZhang on 2009-07-05 21:38:44 as
	Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. [My Copy] Nature chemical biology (28 June 2009) by Bryson D. Bennett, Elizabeth H. Kimball, Melissa Gao, Robin Osterhout, Stephen J. Van Dien, Joshua D. Rabinowitz posted to bacteria metabolomics thermodynamics by schwartzjmc on 2009-07-01 13:19:10 as
	Flux balance analysis of a genome-scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains. [My Copy] Biotechnol Prog, Vol. 23, No. 2. (r 2007), pp. 320-326. by T. Cakir, C. Efe, D. Dikicioglu, A. Hortaçsu, B. Kirdar, S. G. Oliver posted to fba metabolomics yeast by schwartzjmc on 2009-07-01 10:34:08 as along with 3 people cgaugain michaelbarton alexg

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review	28
nmr	25
proteomics	23
plant	21
network	20
metabolic-profiling	15
transcriptomics	15
metabolic	14
systems-biology	14
genomics	12
herbal	12
ms	12
cancer	11
lc-ms	11
mendes	11
software	11
statistics	11
systemsbiology	11
metabolism	10
networks	10
massspec	9
bioinformatics	8
disease	8
footprinting	8
metabolite-concentrations	8
metabonomics	8
omics	8
pathway	8
systems_biology	8
biology	7
database	7
modelling	7
bacteria	6
breast-cancer	6
evolution	6
mass	6
sysbio	6
yeast	6
analysis	5
gc-ms	5
genome	5
mass-spectrometry	5
methods	5
ocbn	5
spectroscopy	5
structure	5
systems	5
biochemical-systems-theory	4
comparison	4
fba	4
flux	4
functional	4
human	4
learning	4
machine	4
metabolome	4
modeling	4
mrs	4
pathways	4
spectrometry	4
standards	4
tutorial	4
biomarker	3
cancer-crosstalk	3
crohn	3
data-mining	3
drug	3
expression	3
fluxomics	3
gene	3
genetics	3
gp	3
metabolic-control-analysis	3
metabolomes	3
metabolomic	3
microarray	3
ml	3
pathintro	3
pathpaper	3
pca	3
ptw	3
raman	3
scerevisiae	3
som	3
urine	3
visualisation	3
vitis	3
algorithms	2
databank	2
fingerprinting	2
gc	2
gwa	2
modularity	2
neuro-rehabilitation	2
normalisation	2
plasma	2
processing	2
pseudomas_aeruginosa	2
quantitative	2
warburg	2

Tag metabolomics [at least 200 articles] Export

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