Tag metagenomics [at least 200 articles] Export

Recent papers classified by the tag metagenomics.

	High Diversity of the Viral Community from an Antarctic Lake [My Copy] Science, Vol. 326, No. 5954. (6 November 2009), pp. 858-861. by Alberto Lopez-Bueno, Javier Tamames, David Velazquez, Andres Moya, Antonio Quesada, Antonio Alcami posted to virus metagenomics ecology community antarctic by neils on 2009-11-08 22:22:37 as along with 1 person hughitt1
	Prediction of effective genome size in metagenomic samples [My Copy] Genome Biology, Vol. 8 (15 January 2007), R10. by Jeroen Raes, Jan O. Korbel, Martin J. Lercher, Christian von Mering, Peer Bork posted to metagenomics genome_size bioinformatics by halinat on 2009-11-05 15:47:12 as along with 3 people and 1 group idoerg yas michC T_lab
	Evaluation of functional gene enrichment in a soil metagenomic clone library. [My Copy] Journal of microbiological methods, Vol. 76, No. 1. (January 2009), pp. 105-107. by Sandrine Demanèche, Maude M. David, Elisabeth Navarro, Pascal Simonet, Timothy M. Vogel posted to oligonucleotide_probes metagenomics by halinat on 2009-11-04 18:44:00 as
	TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 56. by Naryttza Diaz, Lutz Krause, Alexander Goesmann, Karsten Niehaus, Tim Nattkemper posted to metagenomics bioinformatics by halinat on 2009-11-04 18:35:14 as along with 5 people and 1 group esyoun dakelley jonathaneisen bluto jmeppley iSEEM
	The Sequence Analysis and Management System – SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies [My Copy] Journal of Biotechnology, Vol. 140, No. 1-2. (10 March 2009), pp. 3-12. by Thomas Bekel, Kolja Henckel, Helge Küster, et al.Folker Meyer, Virginie Mittard Runte, Heiko Neuweger, Daniel Paarmann, Oliver Rupp, Martha Zakrzewski, Alfred Pühler posted to pyrosequencing metagenomics bioinformatics by halinat on 2009-11-04 18:33:01 as along with 1 person druvus
	ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2737-2738. by Erik Kristiansson, Philip Hugenholtz, Daniel Dalevi posted to statistics r metagenomics comparative by operon on 2009-11-03 15:14:37 as along with 4 people and 1 group jmeppley dswan skembel djkt iSEEM
	Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals [My Copy] PLoS ONE, Vol. 4, No. 10. (9 October 2009), e7370. by Dana Willner, Mike Furlan, Matthew Haynes, et al.Robert Schmieder, Florent E. Angly, Joas Silva, Sassan Tammadoni, Bahador Nosrat, Douglas Conrad, Forest Rohwer posted to viral metagenomics cystic_fibrosis cf by skembel on 2009-11-02 22:21:02 as
	Windshield splatter analysis with the Galaxy metagenomic pipeline [My Copy] Genome Research, Vol. 19, No. 11. (9 November 2009), pp. 2144-2153. by Sergei Kosakovsky Pond, Samir Wadhawan, Francesca Chiaromonte, et al.Guruprasad Ananda, Wen-Yu Chung, James Taylor, Anton Nekrutenko posted to workflow metagenomics eukaryotes db by djkt to the group iSEEM on 2009-11-02 18:13:32 as along with 5 people operon neils idonaldson jgill kshameer
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to short-reads sequence-alignment metagenomics assembly by dakelley on 2009-11-02 04:32:58 as along with 7 people and 1 group druvus kinestetika ThomasDOtto jasontsai skembel sharpton jmeppley iSEEM
	Obesity alters gut microbial ecology. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 31. (2 August 2005), pp. 11070-11075. by Ruth E. Ley, Fredrik Bäckhed, Peter Turnbaugh, Catherine A. Lozupone, Robin D. Knight, Jeffrey I. Gordon posted to metagenomics by robertrentzsch on 2009-10-30 14:57:50 as along with 4 people and 2 groups sim82 Zephyrus marimo michC Orengo Group Journal Picks MathBio
	An obesity-associated gut microbiome with increased capacity for energy harvest. [My Copy] Nature, Vol. 444, No. 7122. (21 December 2006), pp. 1027-1031. by Peter J. Turnbaugh, Ruth E. Ley, Michael A. Mahowald, Vincent Magrini, Elaine R. Mardis, Jeffrey I. Gordon posted to metagenomics by robertrentzsch to the group Orengo Group Journal Picks on 2009-10-30 14:56:44 as along with 8 people and 2 groups Thaverkamp Zephyrus ana jmeppley michC srfairclough wenhan GX structural_bioinformatics Bioinformatics
	Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (10 April 2009), e1000352. by James R. White, Niranjan Nagarajan, Mihai Pop posted to metagenomics biodiversity 29-oct-09 by CorinYeats to the group Orengo Group Journal Picks on 2009-10-29 13:02:13 as along with 11 people and 1 group dayjm taylor73 Thaverkamp hpaces sriesenfeld APRegier dswan druvus djkt skembel idoerg iSEEM
	Analysis and comparison of very large metagenomes with fast clustering and functional annotation [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 359. by Weizhong Li posted to metagenomics metagenomic_data_analysis clustering_algorithm clustering annotation analysis by kshameer on 2009-10-29 07:06:14 as along with 2 people and 1 group ppgardne neils Journal picks
	Phylogenetic screening of a bacterial, metagenomic library using homing endonuclease restriction and marker insertion [My Copy] Nucl. Acids Res. (18 September 2009), gkp746. by Pui Y. Yung, Catherine Burke, Matt Lewis, Suhelen Egan, Staffan Kjelleberg, Torsten Thomas posted to prokariotic phylogeny microbiology metagenomics bateria by inquil on 2009-10-26 10:29:55 as along with 1 person neils
	What is microbial community ecology\|[quest]\| [My Copy] The ISME Journal, Vol. 3, No. 11. (06 August 2009), pp. 1223-1230. by Allan Konopka posted to review microbes metagenomics ecology community by djkt to the group iSEEM on 2009-10-22 22:42:13 as along with 1 person skembel
	A simple, fast, and accurate method of phylogenomic inference [My Copy] Genome Biology, Vol. 9, No. 10. (13 October 2008), R151. by Martin Wu, Jonathan Eisen posted to metagenomics classification by dakelley on 2009-10-22 20:51:16 as along with 12 people and 2 groups jeargle AaronDarling zwang cgaugain treangen Katje operon ellakat scryrps djkt aramata druvus microbiology_nijmegen iSEEM
	Unsupervised statistical clustering of environmental shotgun sequences [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 316. by Andrey Kislyuk, Srijak Bhatnagar, Jonathan Dushoff, Joshua Weitz posted to metagenomics clustering by dakelley on 2009-10-22 20:50:47 as along with 2 people druvus BioInfoCites
	XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (07 October 2008), 420. by Daniel Frank posted to metagenomics bioinformatics by vaulot on 2009-10-21 16:00:37 as along with 5 people and 3 groups jlgreen Thaverkamp treangen ojabado nuin Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	Using growing self-organising maps to improve the binning process in environmental whole-genome shotgun sequencing. [My Copy] Journal of biomedicine & biotechnology, Vol. 2008, No. 1. (2008) by Chon-Kit Kenneth K. Chan, Arthur L. Hsu, Sen-Lin L. Tang, Saman K. Halgamuge posted to metagenomics clustering by dakelley on 2009-10-19 21:26:31 as along with 4 people idoerg azazello druvus alexisfjdufresne
	CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads [My Copy] Research in Computational Molecular Biology (2008), pp. 17-28. by Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan Eisen posted to metagenomics clustering by dakelley on 2009-10-19 21:15:32 as
	Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification [My Copy] Bioinformatics, Vol. 24, No. 14. (15 July 2008), pp. 1568-1574. by Christian Martin, Naryttza N. Diaz, Jorg Ontrup, Tim W. Nattkemper posted to metagenomics clustering by dakelley on 2009-10-19 18:01:16 as along with 2 people inesdesantiago nklee
	The genomic basis of trophic strategy in marine bacteria [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 37. (15 September 2009), pp. 15527-15533. by Federico M. Lauro, Diane McDougald, Torsten Thomas, et al.Timothy J. Williams, Suhelen Egan, Scott Rice, Matthew Z. DeMaere, Lily Ting, Haluk Ertan, Justin Johnson, Steven Ferriera, Alla Lapidus, Iain Anderson, Nikos Kyrpides, A. Christine Munk, Chris Detter, Cliff S. Han, Mark V. Brown, Frank T. Robb, Staffan Kjelleberg, Ricardo Cavicchioli posted to niche metagenomics genome by kinestetika to the group Shared Literature Resource of the Microbial Fitness Group - MPI Bremen on 2009-10-19 15:50:32 as along with 3 people zarrazlee Katje maren
	Fuzzy Genome Sequence Assembly for Single and Environmental Genomes [My Copy] Fuzzy Systems in Bioinformatics and Computational Biology (2009), pp. 19-44. by Sara Nasser, Adrienne Breland, Frederick Harris, Monica Nicolescu, Gregory Vert posted to metagenomics clustering by dakelley on 2009-10-16 23:05:41 as
	Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data [My Copy] Pattern Recognition in Bioinformatics (2009), pp. 102-112. by Gianluigi Folino, Fabio Gori, Mike Jetten, Elena Marchiori posted to metagenomics clustering by dakelley on 2009-10-16 22:57:41 as
	Clustering Metagenome Short Reads Using Weighted Proteins [My Copy] Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (2009), pp. 152-163. by Gianluigi Folino, Fabio Gori, Mike Jetten, Elena Marchiori posted to metagenomics clustering by dakelley on 2009-10-16 22:55:23 as
	Community-wide analysis of microbial genome sequence signatures [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R85. by Gregory Dick, Anders Andersson, Brett Baker, et al.Sheri Simmons, Brian Thomas, A. Pepper Yelton, Jillian Banfield posted to metagenomics genome_signatures clustering by dakelley on 2009-10-16 22:48:54 as along with 7 people and 2 groups druvus bdessailly skembel djkt jonilaserson neils barriot Orengo Group Journal Picks iSEEM
	Application of tetranucleotide frequencies for the assignment of genomic fragments [My Copy] Environmental Microbiology, Vol. 6, No. 9. (September 2004), pp. 938-947. by Hanno Teeling, Anke Meyerdierks, Margarete Bauer, Rudolf Amann, Frank O. Glöckner posted to metagenomics genome_signatures clustering by dakelley on 2009-10-16 22:27:24 as along with 7 people Thaverkamp azazello druvus michC bluto george_g mcox
	Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 26. (30 June 2009), pp. 10787-10792. by Adam C. Martiny, Satish Kathuria, Paul M. Berube posted to nitrogen_cycles metagenomics cyanobacteria by hwright on 2009-10-15 23:32:46 as
	The NIH Human Microbiome Project [My Copy] Genome Research (9 October 2009) by Jane Peterson, Susan Garges, Maria Giovanni, et al.Pamela McInnes, Lu Wang, Jeffery A. Schloss, Vivien Bonazzi, Jean E. McEwen, Kris A. Wetterstrand, Carolyn Deal, Carl C. Baker, Valentina Di Francesco, T. Kevin Howcroft, Robert W. Karp, R. Dwayne Lunsford, Christopher R. Wellington, Tsegahiwot Belachew, Michael Wright, Christina Giblin, Hagit David, Melody Mills, Rachelle Salomon, Christopher Mullins, Beena Akolkar, Lisa Begg, Cindy Davis, Lindsey Grandison, Michael Humble, Jag Khalsa, A. Roger Little, Hannah Peavy, Carol Pontzer, Matthew Portnoy, Michael H. Sayre, Pamela Starke-Reed, Samir Zakhari, Jennifer Read, Bracie Watson, Mark Guyer posted to metagenomics by kshameer on 2009-10-14 08:00:36 as along with 1 person neils
	Moussa virus: a new member of the Rhabdoviridae family isolated from Culex decens mosquitoes in Côte d'Ivoire. [My Copy] Virus research (2 October 2009) by Phenix-Lan L. Quan, Sandra Junglen, Alla Tashmukhamedova, et al.Sean Conlan, Stephen K. Hutchison, Andreas Kurth, Heinz Ellerbrok, Michael Egholm, Thomas Briese, Fabian H. Leendertz, W. Ian Lipkin posted to virus self rhabdovirus mosquitoes metagenomics by sconlan on 2009-10-13 13:51:28 as
	Environmental Genome Shotgun Sequencing of the Sargasso Sea [My Copy] Science, Vol. 304, No. 5667. (2 April 2004), pp. 66-74. by J. Craig Venter, Karin Remington, John F. Heidelberg, et al.Aaron L. Halpern, Doug Rusch, Jonathan A. Eisen, Dongying Wu, Ian Paulsen, Karen E. Nelson, William Nelson, Derrick E. Fouts, Samuel Levy, Anthony H. Knap, Michael W. Lomas, Ken Nealson, Owen White, Jeremy Peterson, Jeff Hoffman, Rachel Parsons, Holly Baden-Tillson, Cynthia Pfannkoch, Yu-Hui Rogers, Hamilton O. Smith posted to shotgun_sequencing metagenomics by skembel on 2009-10-09 20:25:51 as along with 20 people and 2 groups esyoun Thaverkamp jbhiatt kinestetika knaseanka eoghanharr johanviklund bpb jmeppley balajis eweaver AaronDarling bluto jdelcampo azazello beatrizfernandez wenhan pradiptaray mcox vrich microbiology_nijmegen Microbial-Ecology
	The Airborne Metagenome in an Indoor Urban Environment [My Copy] PLoS ONE, Vol. 3, No. 4. (2 April 2008), e1862. by Susannah G. Tringe, Tao Zhang, Xuguo Liu, et al.Yiting Yu, Wah H. Lee, Jennifer Yap, Fei Yao, Sim T. Suan, Seah K. Ing, Matthew Haynes, Forest Rohwer, Chia L. Wei, Patrick Tan, James Bristow, Edward M. Rubin, Yijun Ruan posted to metagenomics air by skembel on 2009-10-09 20:23:26 as along with 3 people and 1 group vmedina09 semrich djkt iSEEM
	Inference of Microbial Recombination Rates from Metagenomic Data [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000674. by Philip L. F. Johnson, Montgomery Slatkin posted to recombination microbes metagenomics by djkt to the group iSEEM on 2009-10-08 16:16:52 as along with 3 people druvus kinestetika maren
	A bioinformatician's guide to metagenomics. [My Copy] Microbiology and molecular biology reviews : MMBR, Vol. 72, No. 4. (1 December 2008), pp. 557-578. by Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz posted to metagenomics by halinat to the group Shared Literature Resource of the Microbial Fitness Group - MPI Bremen on 2009-10-07 19:14:07 as along with 37 people and 6 groups jasontsai hwright michaelbarton taylor73 esyoun bluto idoerg hpaces skembel inquil EKotlarska anphony stajich sharpton vrich vaulot adgrativol jakechen balicea dbk GustavoLacerda guhjy hessec fhalbrit Zephyrus anazhu dswan sjcockell Borelli druvus azazello kinestetika jmeppley neils Katje allysonlister skato_toyaku iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology Translational Bioinformatics Roswell Cancer Crosstalk microbiology_nijmegen
	A Novel Bioinformatics Strategy for Function Prediction of Poorly-Characterized Protein Genes Obtained from Metagenome Analyses. [My Copy] DNA research : an international journal for rapid publication of reports on genes and genomes (3 October 2009) by Takashi Abe, Shigehiko Kanaya, Hiroshi Uehara, Toshimichi Ikemura posted to protein-classification protein-analysis metagenomics by sjcockell on 2009-10-07 11:57:17 as
	Metagenomic analysis of RNA viruses in a fresh water lake. [My Copy] PloS one, Vol. 4, No. 9. (29 September 2009), e7264. by Appolinaire Djikeng, Ryan Kuzmickas, Norman G. Anderson, David J. Spiro posted to virus metagenomics by kinestetika on 2009-10-07 09:05:16 as along with 1 person neils
	Visual and statistical comparison of metagenomes [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1849-1855. by Suparna Mitra, Bernhard Klar, Daniel H. Huson posted to visualization metagenomics by carlk on 2009-10-05 18:04:40 as along with 13 people and 3 groups polivares inesdesantiago taylor73 ollieredfernwork nuin stajich sriesenfeld idoerg guhjy chrisamiller jmeppley neils druvus Orengo Group Journal Picks Mycology iSEEM
	Metagenomic study of the oral microbiota by Illumina high-throughput sequencing [My Copy] Journal of Microbiological Methods (29 September 2009) by Vladimir Lazarevic, Katrine Whiteson, Susan Huse, et al.David Hernandez, Laurent Farinelli, Magne Østerås, Jacques Schrenzel, Patrice François posted to metagenomics human bacteria by druvus on 2009-10-05 08:11:21 as
	Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth [My Copy] Science, Vol. 322, No. 5899. (10 October 2008), pp. 275-278. by Dylan Chivian, Eoin L. Brodie, Eric J. Alm, et al.David E. Culley, Paramvir S. Dehal, Todd Z. DeSantis, Thomas M. Gihring, Alla Lapidus, Li H. Lin, Stephen R. Lowry, Duane P. Moser, Paul M. Richardson, Gordon Southam, Greg Wanger, Lisa M. Pratt, Gary L. Andersen, Terry C. Hazen, Fred J. Brockman, Adam P. Arkin, Tullis C. Onstott posted to ecology share natural_habitats metagenomics by yyfwuhan on 2009-10-03 21:33:53 as along with 9 people and 4 groups lflorez skembel claymans vaulot djkt Katje dinnes neils kinestetika Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM microbiology_nijmegen
	Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico [My Copy] Environmental Microbiology, Vol. 11, No. 1. (2009), pp. 16-34. by Mya Breitbart, Ana Hoare, Anthony Nitti, et al.Janet Siefert, Matthew Haynes, Elizabeth Dinsdale, Robert Edwards, Valeria Souza, Forest Rohwer, David Hollander posted to metagenomics by orzenil on 2009-10-01 22:59:37 as
	Functional metagenomic profiling of nine biomes [My Copy] Nature, Vol. 452, No. 7187. (12 March 2008), pp. 629-632. by Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, et al.Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren McDaniel, Mary A. Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R. Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca V. Thurber, Linda Wegley, Bryan A. White, Forest Rohwer posted to metagenomics functional_diversity by idoerg on 2009-10-01 18:34:31 as along with 17 people and 6 groups Thaverkamp shuzhens anphony michaelbarton azazello skembel guhjy djkt neils kinestetika bluto oelemento alexisfjdufresne vaulot jmeppley vrich jlgreen Savage Lab, UCLA microbiology_nijmegen Microbial-Ecology Papers recommended by the Roscoff Plankton Group Green Lab iSEEM
	Accurate determination of microbial diversity from 454 pyrosequencing data. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 639-641. by Christopher Quince, Anders Lanzén, Thomas P. Curtis, et al.Russell J. Davenport, Neil Hall, Ian M. Head, L. Fiona Read, William T. Sloan posted to methods metagenomics by kinestetika on 2009-10-01 10:56:35 as along with 7 people and 2 groups halinat jgill jonilaserson skembel druvus orzenil danmaclean iSEEM Bioinformatics
	Metagenomic Pyrosequencing and Microbial Identification [My Copy] Clin Chem, Vol. 55, No. 5. (1 May 2009), pp. 856-866. by Joseph F. Petrosino, Sarah Highlander, Ruth A. Luna, Richard A. Gibbs, James Versalovic posted to pyrosequencing ngs metagenomics by orzenil on 2009-10-01 02:39:01 as along with 4 people and 1 group druvus macowell idoerg jmeppley DIYbio
	Comparative metagenomics of Daphnia symbionts. [My Copy] BMC genomics, Vol. 10 (21 April 2009), 172. by W. Qi, G. Nong, J. F. Preston, F. Ben-Ami, D. Ebert posted to microbial_symbionts metagenomics daphnia by cmzmasek on 2009-09-30 02:01:57 as along with 3 people jmeppley thegoose Thaverkamp
	Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes [My Copy] DNA Res, Vol. 14, No. 4. (1 January 2007), pp. 169-181. by Ken Kurokawa, Takehiko Itoh, Tomomi Kuwahara, et al.Kenshiro Oshima, Hidehiro Toh, Atsushi Toyoda, Hideto Takami, Hidetoshi Morita, Vineet K. Sharma, Tulika P. Srivastava, Todd D. Taylor, Hideki Noguchi, Hiroshi Mori, Yoshitoshi Ogura, Dusko S. Ehrlich, Kikuji Itoh, Toshihisa Takagi, Yoshiyuki Sakaki, Tetsuya Hayashi, Masahira Hattori posted to microbial_symbionts metagenomics human_intestinal_microbes by cmzmasek on 2009-09-30 01:48:48 as along with 9 people esyoun skembel jmeppley wenhan carpi melissa_wos vrich bluto FmuO
	Metagenomic Analysis of the Human Distal Gut Microbiome [My Copy] Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359. by Steven R. Gill, Mihai Pop, Robert T. DeBoy, et al.Paul B. Eckburg, Peter J. Turnbaugh, Buck S. Samuel, Jeffrey I. Gordon, David A. Relman, Claire M. Fraser-Liggett, Karen E. Nelson posted to microbial_symbionts metagenomics human_intestinal_microbes by cmzmasek on 2009-09-30 00:00:56 as along with 22 people and 9 groups Thaverkamp jbhiatt windman83 Zephyrus vvoorr skembel Yanno ana dayjm jmeppley dchughes cmm neveaire hcmorton michC bluto azazello beatrizfernandez wenhan xingxu host-bacteria melissa_wos structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID Microbial-Ecology Genetics-of-Gambling
	Symbiotic gut microbes modulate human metabolic phenotypes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 2117-2122. by Min Li, Baohong Wang, Menghui Zhang, et al.Mattias Rantalainen, Shengyue Wang, Haokui Zhou, Yan Zhang, Jian Shen, Xiaoyan Pang, Meiling Zhang, Hua Wei, Yu Chen, Haifeng Lu, Jian Zuo, Mingming Su, Yunping Qiu, Wei Jia, Chaoni Xiao, Leon M. Smith, Shengli Yang, Elaine Holmes, Huiru Tang, Guoping Zhao, Jeremy K. Nicholson, Lanjuan Li, Liping Zhao posted to microbial_symbionts metagenomics metabolism human_intestinal_microbes by cmzmasek on 2009-09-29 23:44:47 as along with 10 people and 1 group nicholso eehsanipour taylor73 idoerg bluto Zephyrus guhjy wenhan madhadron lp2 R.E.A.D
	Binning sequences using very sparse labels within a metagenome [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 April 2008), 215. by Chon K. Chan, Arthur Hsu, Saman Halgamuge, Sen L. Tang posted to metagenomics binning by skembel on 2009-09-29 22:02:40 as along with 13 people and 3 groups esyoun sriesenfeld jmeppley dakelley Thaverkamp idoerg azazello druvus alexl mjetten werwiesel jlgreen djkt Bioinformatics microbiology_nijmegen iSEEM
	Building on basic metagenomics with complementary technologies [My Copy] Genome Biology, Vol. 8, No. 12. (28 December 2007), 231. by Falk Warnecke, Philip Hugenholtz posted to metagenomics class by dakelley on 2009-09-28 23:26:29 as along with 3 people and 3 groups alexisfjdufresne mjetten jlgreen microbiology_nijmegen Green Lab iSEEM
	Quantifying environmental adaptation of metabolic pathways in metagenomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1374-1379. by Tara A. Gianoulis, Jeroen Raes, Prianka V. Patel, et al.Robert Bjornson, Jan O. Korbel, Ivica Letunic, Takuji Yamada, Alberto Paccanaro, Lars J. Jensen, Michael Snyder, Peer Bork, Mark B. Gerstein posted to metagenomics correlation canonical analysis by vvoorr on 2009-09-25 23:59:55 as along with 16 people and 2 groups paccanarolab djkt jjray roys sharpton Lizzy_fun skembel jlgreen Thaverkamp dbensasson anphony michaelbarton idoerg trfield larsjuhljensen jmeppley Paccanaro Lab iSEEM

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bioinformatics	122
ecology	73
review	72
methods	64
microbes	63
sequencing	63
genomics	62
diversity	61
bacteria	60
marine	45
454	42
software	40
evolution	39
genome	38
phylogenetics	35
microbiology	34
annotation	33
virus	33
rna	28
microbial	27
community	26
microbiome	25
soil	24
clustering	22
binning	20
human	19
phylogeny	19
case	18
pyrosequencing	18
sea	18
16s	17
microbial-ecology	17
statistics	17
2008	16
biodiversity	15
bioinformatics_software	15
water	15
assembly	14
marine_microbiology	14
microbial_ecology	14
rrna	14
classification	13
environment	13
metabolism	13
ht_sequencing	12
subassemblypaper	12
gut	11
screening	11
simulation	11
taxonomy	11
2007	10
db	10
symbiosis	10
algorithm	9
biochemistry	9
ecological_genomics	9
environmental	9
proteomics	9
wga	9
analysis	8
archaea	8
database	8
gene	8
gos	8
mda	8
medical	8
microarray	8
microbial_communities	8
popgen	8
population	8
sequence	8
alignment	7
comparative_genomics	7
comparative_metagenomics	7
eukaryotes	7
fivestar	7
global_ocean_survey	7
method	7
ocean	7
phage	7
prochlorococcus	7
proteins	7
communities	6
crenarchaeal_nitrification	6
cyanobacteria	6
data	6
environmental_genomics	6
evolutionary_genomics	6
freshwater_ecology	6
otu	6
prokaryotes	6
virology	6
viruses	6
visualization	6
biotechnology	5
metagenome	5
methane	5
next_generation	5
phylogenomics	5
transcriptomics	5

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