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Tag methylation [541 articles]

Recent papers classified by the tag methylation.
  • Genome-wide approaches to studying chromatin modifications
    Nat Rev Genet, Vol. 9, No. 3. (March 2008), pp. 179-191.
    by Dustin E Schones, Keji Zhao
    posted to chromatin genome-wide histone methylation by zwang on 2008-02-19 01:11:44 as ** along with 8 people tmmurali dchughes vega cabbagezs idonaldson faion bpcusack jyuh
  • High-Resolution Profiling of Histone Methylations in the Human Genome
    Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837.
    by Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao
    posted to genome histone methylation by zwang on 2007-06-14 02:07:15 as ** along with 1 person epigenetics
  • Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters.
    PLoS Genet, Vol. 3, No. 10. (26 October 2007), pp. 2023-2036.
    by L Shen, Y Kondo, Y Guo, J Zhang, L Zhang, S Ahmed, J Shu, X Chen, RA Waterland, JP Issa
    posted to dna genome-wide methylation promoter by zwang on 2007-11-20 08:55:18 as ** along with 1 person sebastien_vigneau
  • Methylation mediated silencing of TMS1/ASC gene in prostate cancer
    Molecular Cancer, Vol. 5 (18 July 2006), 28.
    by Partha M Das, Kavitha Ramachandran, Jane Vanwert, Larry Ferdinand, Gopal Gopisetty, Isildinha M Reis, Rakesh Singal
    posted to cancer methylation molecular prostate by zkyken on 2007-06-05 14:10:47 as **
  • A chromatin-wide transition to H4K20 monomethylation impairs genome integrity and programmed DNA rearrangements in the mouse.
    Genes & development, Vol. 22, No. 15. (1 August 2008), pp. 2048-2061.
    by G Schotta, R Sengupta, S Kubicek, S Malin, M Kauer, E Callén, A Celeste, M Pagani, S Opravil, IA De La Rosa-Velazquez, A Espejo, MT Bedford, A Nussenzweig, M Busslinger, T Jenuwein
    posted to dna-damage dna-repair h4k20 methylation monomethylation by zhlei on 2008-08-07 23:24:43 as **
  • A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling
    Nature, Vol. 442, No. 7098. (21 May 2006), pp. 86-90.
    by Joanna Wysocka, Tomek Swigut, Hua Xiao, Thomas A Milne, So Y Kwon, Joe Landry, Monika Kauer, Alan J Tackett, Brian T Chait, Paul Badenhorst, Carl Wu, David C Allis
    posted to chromatin chromatin-remodeling-modification methylation by zhlei on 2007-11-24 00:26:55 as ** along with 1 person and 1 group kengg Plantandetc
  • H3K27 Demethylases, at Long Last
    Cell, Vol. 131, No. 1. (5 October 2007), pp. 29-32.
    by Tomek Swigut, Joanna Wysocka
    posted to demethylation histone methylation review by zhlei on 2007-11-21 00:12:20 as ****
  • Gene regulationA finger on the mark
    Nature, Vol. 442, No. 7098. (05 July 2006), pp. 31-32.
    by Peter B Becker
    posted to chromatin chromatin-remodeling-modification methylation review by zhlei on 2007-11-24 00:26:04 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • The Histone H3 Lysine-27 Demethylase Jmjd3 Links Inflammation to Inhibition of Polycomb-Mediated Gene Silencing
    Cell, Vol. 130, No. 6. (21 September 2007), pp. 1083-1094.
    by Francesca De Santa, Maria G Totaro, Elena Prosperini, Samuele Notarbartolo, Giuseppe Testa, Gioacchino Natoli
    posted to demethylation histone methylation by zhlei on 2007-11-21 00:15:43 as **
  • Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
    Nature, Vol. 442, No. 7098. (21 May 2006), pp. 91-95.
    by Haitao Li, Serge Ilin, Wooikoon Wang, Elizabeth M Duncan, Joanna Wysocka, David C Allis, Dinshaw J Patel
    posted to chromatin chromatin-binding chromatin-remodeling-modification h3k4 histone histone-modification methylation phd by zhlei on 2007-12-19 19:58:06 as ** along with 1 person and 1 group kengg Plantandetc
  • A tale of histone modifications
    Genome Biology, Vol. 2, No. 4. (2001), pp. reviews0003.1-reviews0003.6.
    by Patrick Grant
    posted to acetylation histone methylation modification phosphorylation by zhlei on 2007-11-02 04:39:59 as **
  • Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice.
    Plant physiology, Vol. 144, No. 3. (July 2007), pp. 1508-1519.
    by L Huang, Q Sun, F Qin, C Li, Y Zhao, DX Zhou
    posted to dimethylation dna-damage h3k9 methylation plant sirt2 by zhlei on 2008-08-06 18:05:50 as **
  • Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks
    Nature, Vol. 432, No. 7015. (18 November 2004), pp. 406-411.
    by Yentram Huyen, Omar Zgheib, Ditullio, Vassilis G Gorgoulis, Panayotis Zacharatos, Tom J Petty, Emily A Sheston, Hestia S Mellert, Elena S Stavridi, Thanos D Halazonetis
    posted to 53bp1 crb2 dna-damage dsb h3k79 histone histone-modification methylation rad9 by zhlei on 2007-12-14 18:12:16 as ** along with 2 people DNAReplication elzodw
  • Breast cancer epigenetics: normal human mammary epithelial cells as a model system.
    Journal of molecular medicine (Berlin, Germany) (21 August 2008)
    by Rebecca A Hinshelwood, Susan J Clark
    posted to genetics review methylation epigenetics cancer breast by Zephyrus on 2008-10-04 09:42:43 as ** along with 1 person and 1 group misonneh Breast Cancer Reading Club
  • DNA methylation in breast and colorectal cancers
    Modern Pathology, Vol. aop, No. current.
    by Anshu Agrawal, Richard F Murphy, Devendra K Agrawal
    posted to breast cancer dna methylation by Zephyrus on 2008-07-17 00:39:14 as ** along with 1 person misonneh
  • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    Nature (01 July 2007)
    by Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche, William Lee, Eric Mendenhall, Aisling O’donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S Lander, Bradley E Bernstein
    posted to geneexpression methylation by vplagnol on 2007-08-29 15:29:08 as ** along with 14 people and 1 group gdb jyuh brant dchughes vega kengg olympos epigenetics bioyang cabbagezs rschulz slevy03 jasonflannick inesdesantiago EisenLab
  • Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay.
    Proc Natl Acad Sci U S A, Vol. 104, No. 13. (27 March 2007), pp. 5527-5532.
    by T Rauch, Z Wang, X Zhang, X Zhong, X Wu, SK Lau, KH Kernstine, AD Riggs, GP Pfeifer
    posted to medip methylation by vmsr on 2008-05-28 22:27:29 as ** along with 2 people blackm0k slevy03
  • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    Nature Genetics, Vol. 37, No. 8. (10 July 2005), pp. 853-862.
    by Michael Weber, Jonathan J Davies, David Wittig, Edward J Oakeley, Michael Haase, Wan L Lam, Dirk Schübeler
    posted to medip methylation by vmsr on 2008-05-28 22:13:54 as ** along with 4 people tabu epigenetics slevy03 oelemento
  • Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
    Nature Genetics, Vol. 39, No. 1. (26 November 2006), pp. 61-69.
    by Daniel Zilberman, Mary Gehring, Robert K Tran, Tracy Ballinger, Steven Henikoff
    posted to medip methylation by vmsr on 2008-05-28 22:35:20 as ** along with 2 people saru olympos
  • MIRA-Assisted Microarray Analysis, a New Technology for the Determination of DNA Methylation Patterns, Identifies Frequent Methylation of Homeodomain-Containing Genes in Lung Cancer Cells
    Cancer Res, Vol. 66, No. 16. (15 August 2006), pp. 7939-7947.
    by Tibor Rauch, Hongwei Li, Xiwei Wu, Gerd P Pfeifer
    posted to medip methylation by vmsr on 2008-05-28 22:25:07 as ** along with 2 people blackm0k slevy03
  • Epigenomics: mapping the methylome.
    Cell cycle (Georgetown, Tex.), Vol. 5, No. 2. (January 2006), pp. 155-158.
    by IM Wilson, JJ Davies, M Weber, CJ Brown, CE Alvarez, C MacAulay, D Schübeler, WL Lam
    posted to medip methylation by vmsr on 2008-05-28 23:06:46 as **
  • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    Nature Genetics, Vol. 39, No. 4. (04 March 2007), pp. 457-466.
    by Michael Weber, Ines Hellmann, Michael B Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler
    posted to medip methylation by vmsr on 2008-05-28 22:31:48 as ** along with 5 people epigenetics bioyang bpcusack gjuggler rschulz
  • Discovery of Epigenetically Silenced Genes by Methylated DNA Immunoprecipitation in Colon Cancer Cells
    Cancer Res, Vol. 67, No. 24. (15 December 2007), pp. 11481-11486.
    by Filipe V Jacinto, Esteban Ballestar, Santiago Ropero, Manel Esteller
    posted to medip methylation by vmsr on 2008-05-28 23:00:45 as **
  • An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
    Genome Res. (24 June 2008), gr.077479.108.
    by Vardhman Rakyan, Thomas Down, Natalie Thorne, Paul Flicek, Eugene Kulesha, Stefan Graf, Eleni Tomazou, Liselotte Backdahl, Nathan Johnson, Marils Herberth, Kevin Howe, David Jackson, Marcos Miretti, Heike Fiegler, John Marioni, Ewan Birney, Tim Hubbard, Nigel Carter, Simon Tavare, Stephan Beck
    posted to bioinformatics chip chromatin histone methylation by vega on 2008-06-30 15:15:46 as ** along with 3 people oelemento rschulz niallhaslam
  • Role for DNA methylation in genomic imprinting.
    Nature, Vol. 366, No. 6453. (25 November 1993), pp. 362-365.
    by E Li, C Beard, R Jaenisch
    posted to dna methylation by tvdbulck on 2008-03-20 09:58:42 as ** along with 2 people balicea rschulz
  • CpG-rich islands and the function of DNA methylation
    Nature, Vol. 321, No. 6067. (15 May 1986), pp. 209-213.
    by Adrian P Bird
    posted to dna methylation by tvdbulck on 2008-03-20 09:59:59 as ** along with 1 person blackm0k
  • A motif within SET-domain proteins binds single-stranded nucleic acids and transcribed and supercoiled DNAs and can interfere with assembly of nucleosomes.
    Mol Cell Biol, Vol. 25, No. 5. (March 2005), pp. 1891-1899.
    by WA Krajewski, T Nakamura, A Mazo, E Canaani
    posted to histone methylation nucleosomes by tuck on 2006-05-18 01:28:25 as **
  • Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets
    Carcinogenesis, Vol. 27, No. 12. (December 2006), pp. 2409-2423.
    by Ordway, , Bedell, , Citek, , Nunberg, , Garrido, , Kendall, , Stevens, , Cao, , Doerge, , Korshunova, , Holemon, , Mcpherson, , Lakey, , Leon, , Martienssen, , Jeddeloh,
    posted to cpg_island methylation promoter by tuck on 2006-12-28 11:47:22 as **
  • Methylation of histone H4 by arginine methyltransferase PRMT1 is essential in vivo for many subsequent histone modifications
    Genes Dev., Vol. 19, No. 16. (15 August 2005), pp. 1885-1893.
    by Suming Huang, Michael Litt, Gary Felsenfeld
    posted to chromatin histone methylation by tuck on 2006-05-28 18:30:53 as **
  • The Polycomb group protein EZH2 directly controls DNA methylation
    Nature, Vol. 439, No. 7078. (16 February 2006), pp. 871-874.
    by Emmanuelle Vire, Carmen Brenner, Rachel Deplus, Loic Blanchon, Mario Fraga, Celine Didelot, Lluis Morey, Aleyde Van Eynde, David Bernard, Vanderwinden
    posted to dna methylation polycomb by tuck on 2006-05-17 18:51:50 as **
  • Control of developmental regulators by polycomb in human embryonic stem cells.
    Cell, Vol. 125, No. 2. (21 April 2006), pp. 301-313.
    by TI Lee, RG Jenner, LA Boyer, MG Guenther, SS Levine, RM Kumar, B Chevalier, SE Johnstone, MF Cole, K Isono, H Koseki, T Fuchikami, K Abe, HL Murray, JP Zucker, B Yuan, GW Bell, E Herbolsheimer, NM Hannett, K Sun, DT Odom, AP Otte, TL Volkert, DP Bartel, DA Melton, DK Gifford, R Jaenisch, RA Young
    posted to chip-chip epigenetics histone methylation stemcell by tuck on 2006-05-17 10:36:06 as ** along with 5 people and 1 group postrational cconboy nickluscombe Ao_Li2007 inesdesantiago EBI-regulation
  • Counting human somatic cell replications: methylation mirrors endometrial stem cell divisions.
    Proc Natl Acad Sci U S A, Vol. 102, No. 49. (6 December 2005), pp. 17739-17744.
    by JY Kim, S Tavaré, D Shibata
    posted to mathematical methylation model stemcell by tuck on 2006-05-16 02:51:33 as **
  • MLL: how complex does it get?
    J Cell Biochem, Vol. 95, No. 2. (15 May 2005), pp. 234-242.
    by R Popovic, NJ Zeleznik-Le
    posted to histone_code methylation mll trithorax by tuck on 2006-05-18 01:26:52 as **
  • CpG island methylation in a mouse model of lymphoma is driven by the genetic configuration of tumor cells.
    PLoS genetics, Vol. 3, No. 9. (September 2007), pp. 1757-1769.
    by R Opavsky, SH Wang, P Trikha, A Raval, Y Huang, YZ Wu, B Rodriguez, B Keller, S Liyanarachchi, G Wei, RV Davuluri, M Weinstein, D Felsher, M Ostrowski, G Leone, C Plass
    posted to cancer lymphoma methylation myc t-cells by tibbitts on 2008-07-18 21:08:05 as read
  • C. elegans DNA does not contain 5-methylcytosine at any time during development or aging.
    Nucleic Acids Research, Vol. 14 (1986), pp. 6711-6717.
    by VJ Simpson, TE Johnson, RF Hammen
    posted to wormbase nematode mut-aging methylation meth-chromatography fer-15 elegans dna celegans caenorhabditis_elegans c_elegans article aging ackn_cgc by tharris on 2008-09-16 19:29:57 as *** along with 1 group C. elegans / WormBase
  • Tc1 transposase of Caenorhabditis elegans is an endonuclease with a bipartite DNA binding domain.
    EMBO Journal, Vol. 13 (1994), pp. 6125-6132.
    by JC Vos, RHA Plasterk
    posted to wormbase substrate_specificity repetitive_sequences_nucleic_acid nucleotidyltransferases_metabolism nucleotidyltransferases_isolation_and_purification nucleotidyltransferases_genetics nematode molecular_sequence_data methylation escherichia_coli_genetics endonucleases_metabolism endonucleases_genetics elegans dna_insertion_elements dna_binding_proteins_metabolism dna_binding_proteins_isolation_and_purification dna_binding_proteins_genetics celegans caenorhabditis_elegans_enzymology caenorhabditis_elegans c_elegans binding_sites base_sequence article by tharris on 2008-09-16 23:59:03 as *** along with 1 group C. elegans / WormBase
  • Evidence for an instructive mechanism of de novo methylation in cancer cells
    Nature Genetics, Vol. 38, No. 2. (24 January 2006), pp. 149-153.
    by Ilana Keshet, Yeshayahu Schlesinger, Shlomit Farkash, Eyal Rand, Merav Hecht, Eran Segal, Eli Pikarski, Richard A Young, Alain Niveleau, Howard Cedar, Itamar Simon
    posted to methylation by tabu on 2006-01-31 15:00:40 as ** along with 3 people nirfriedman koller rschulz
  • Microarray-based survey of CpG islands identifies concurrent hyper- and hypomethylation patterns in tissues derived from patients with breast cancer.
    Genes Chromosomes Cancer (30 March 2006)
    by Arkadiusz Piotrowski, Magdalena Benetkiewicz, Uwe Menzel, Teresita Díaz D de Ståhl, Kiran Mantripragada, Gintautas Grigelionis, Patrick G G Buckley, Michał Jankowski, Jacek Hoffman, Dariusz Bała, Ewa Srutek, Ryszard Laskowski, Wojciech Zegarski, Jan P P Dumanski
    posted to breast cancer cpg methylation by tabu on 2006-04-03 05:11:31 as **
  • Large-scale structure of genomic methylation patterns.
    Genome Res (19 December 2005)
    by Robert A A Rollins, Fatemeh Haghighi, John R R Edwards, Rajdeep Das, Michael Q Q Zhang, Jingyue Ju, Timothy H H Bestor
    posted to methylation by tabu on 2006-02-06 17:23:41 as ** along with 3 people and 1 group aprasad kaspermunch epigenetics Bioinformatics
  • Nutritional Control of Reproductive Status in Honeybees via DNA Methylation.
    Science (13 March 2008)
    by R Kucharski, J Maleszka, S Foret, R Maleszka
    posted to methylation reproductive_control by stefanjanusz on 2008-06-02 16:46:38 as ** along with 9 people and 1 group stevanspringer aprasad kengg djkt epigenetics aubinhon faion kjglennie sunhwan Integrative_biology_behavior
  • Regulation of alternative polyadenylation by genomic imprinting.
    Genes & development, Vol. 22, No. 9. (1 May 2008), pp. 1141-1146.
    by Andrew J J Wood, Reiner Schulz, Kathryn Woodfine, Katarzyna Koltowska, Colin V V Beechey, Jo Peters, Deborah Bourc'his, Rebecca J J Oakey
    posted to genomic_imprinting methylation rna_tagging by stefanjanusz on 2008-06-02 16:15:13 as ** along with 3 people and 1 group rschulz bertelsen sebastien_vigneau Imprinting
  • DNA methylation reprogramming in the germ line.
    Epigenetics, Vol. 3, No. 1. (9 January 2008)
    by Diane J Lees-Murdock, Colum P Walsh
    posted to methylation by stefanjanusz on 2008-06-02 17:49:06 as ** along with 1 person rschulz
  • MethyCancer: the database of human DNA methylation and cancer.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by X He, S Chang, J Zhang, Q Zhao, H Xiang, K Kusonmano, L Yang, ZS Sun, H Yang, J Wang
    posted to cancer_genome_atlas methylation by srp33 on 2008-08-01 18:35:18 as ** along with 1 person jyuh
  • Epigenetic aberrations and cancer
    Molecular Cancer, Vol. 5 (08 November 2006), 60.
    by Miryam Ducasse, Mark A Brown
    posted to cancer_biology methylation by srp33 on 2008-08-04 18:33:00 as ** along with 2 people jfr kochhan
  • Opinion: CpG island methylator phenotype in cancer
    Nature Reviews Cancer, Vol. 4, No. 12. (01 December 2004), pp. 988-993.
    by Jean-Pierre Issa
    posted to cancer_biology methylation by srp33 on 2008-08-04 15:07:49 as **
  • DNA methylation in brain development and gliomagenesis.
    Frontiers in bioscience : a journal and virtual library, Vol. 8 (1 January 2003)
    by JF Costello
    posted to brain_cancer methylation by srp33 on 2008-05-29 20:40:53 as **
  • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    Nature (17 February 2008)
    by Shawn J Cokus, Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D Haudenschild, Sriharsa Pradhan, Stanley F Nelson, Matteo Pellegrini, Steven E Jacobsen
    posted to arabidopsis bisulphite methylation pattern sequencing by slonik on 2008-04-06 23:38:31 as **** along with 4 people djkt ghattem epigenetics mdimon
  • Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation.
    Cell, Vol. 130, No. 5. (7 September 2007), pp. 851-862.
    by O Mathieu, J Reinders, M Caikovski, C Smathajitt, J Paszkowski
    posted to assymetrical cg cytosine epigenome methylation stability by slonik on 2008-04-04 04:59:08 as ***** along with 1 person saru
  • Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer
    Laboratory Investigation, Vol. aop, No. current. (18 July 2005)
    by Tibor Rauch, Gerd P Pfeifer
    posted to methylation by slevy03 on 2008-05-03 00:29:10 as ** along with 1 person blackm0k
  • Cell type-specific DNA methylation patterns in the human breast.
    Proceedings of the National Academy of Sciences of the United States of America (9 September 2008)
    by Noga Bloushtain-Qimron, Jun Yao, Eric L L Snyder, Michail Shipitsin, Lauren L L Campbell, Sendurai A A Mani, Min Hu, Haiyan Chen, Vadim Ustyansky, Jessica E E Antosiewicz, Pedram Argani, Marc K K Halushka, James A A Thomson, Paul Pharoah, Angel Porgador, Saraswati Sukumar, Ramon Parsons, Andrea L L Richardson, Martha R R Stampfer, Rebecca S S Gelman, Tatiana Nikolskaya, Yuri Nikolsky, Kornelia Polyak
    posted to methylation genomics genego cancer by shikin on 2008-09-22 12:36:23 as ***** along with 1 person and 1 group misonneh GeneGo
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