Tag methylome [41 articles] Export

Recent papers classified by the tag methylome.

	Tackling the methylome: recent methodological advances in genome-wide methylation profiling. [My Copy] Genome medicine, Vol. 1, No. 11. (16 November 2009) by Marcos Rh R. Estécio, Jean-Pierre P. Issa posted to oncology methylome by frohike on 2009-12-17 16:59:35 as
	Human DNA methylomes at base resolution show widespread epigenomic differences [My Copy] Nature In Nature, Vol. 462, No. 7271. (14 October 2009), pp. 315-322. by Ryan Lister, Mattia Pelizzola, Robert H. Dowen, et al.R. David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R. Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo, Lee Edsall, Jessica Antosiewicz-Bourget, Ron Stewart, Victor Ruotti, A. Harvey Millar, James A. Thomson, Bing Ren, Joseph R. Ecker posted to methylome epigenetics by guhjy on 2009-11-22 02:28:30 as along with 28 people and 4 groups gjuggler djkt hyojinkang gbloeb akakak jessopher malay gdb qayub greg neils megraw mamitamura tonamswish rsaito clearbluespring rschulz RyuOgawa hagechouchin443 devinmhellesen daveGerrard polivares dswan fenghezi colinveal frohike liqbbi ethanmj JLab CTCF BergmanLab Journal picks
	Epigenomics: Methylation matters [My Copy] Nature, Vol. 462, No. 7271. (18 November 2009), pp. 296-297. by Dirk Schubeler posted to tissue-specific stem-cell sequencing methylome methylation fibroblast epigenomics by frohike on 2009-11-19 09:14:29 as along with 1 person clduarte
	An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs) [My Copy] Genome Research, Vol. 18, No. 9. (24 September 2008), pp. 1518-1529. by Vardhman K. Rakyan, Thomas A. Down, Natalie P. Thorne, et al.Paul Flicek, Eugene Kulesha, Stefan GrÃ¤f, Eleni M. Tomazou, Liselotte BÃ¤ckdahl, Nathan Johnson, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, Heike Fiegler, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Nigel P. Carter, Simon TavarÃ©, Stephan Beck posted to methylome medip genome-wide epigenetics dna_methylation data_set bioinformatics 2008 by suizifish on 2009-11-05 04:19:23 as along with 8 people timhubbard abizar iris42 huiminC oelemento rschulz vega niallhaslam
	A Comprehensive Microarray-Based DNA Methylation Study of 367 Hematological Neoplasms [My Copy] PLoS ONE, Vol. 4, No. 9. (11 September 2009), e6986. by Jose I. Martin-Subero, Ole Ammerpohl, Marina Bibikova, et al.Eliza Wickham-Garcia, Xabier Agirre, Sara Alvarez, Monika Brüggemann, Stefanie Bug, Maria J. Calasanz, Martina Deckert, Martin Dreyling, Ming Q. Du, Jan Dürig, Martin J. S. Dyer, Jian-Bing Fan, Stefan Gesk, Martin-Leo Hansmann, Lana Harder, Sylvia Hartmann, Wolfram Klapper, Ralf Küppers, Manuel Montesinos-Rongen, Inga Nagel, Christiane Pott, Julia Richter, José Román-Gómez, Marc Seifert, Harald Stein, Javier Suela, Lorenz Trümper, Inga Vater, Felipe Prosper, Claudia Haferlach, Juan C. Cigudosa, Reiner Siebert posted to methylome methylation lymphoma leukemia by frohike on 2009-09-11 08:33:21 as
	Large-scale structure of genomic methylation patterns [My Copy] Genome Research, Vol. 16, No. 2. (19 February 2006), pp. 157-163. by Robert A. Rollins, Fatemeh Haghighi, John R. Edwards, et al.Rajdeep Das, Michael Q. Zhang, Jingyue Ju, Timothy H. Bestor posted to 2006 data_set dna_methylation methylome by suizifish on 2009-06-10 06:46:55 as along with 6 people and 1 group huiminC oelemento aprasad kaspermunch tabu epigenetics Bioinformatics
	Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells [My Copy] Nature Genetics, Vol. 37, No. 8. (10 July 2005), pp. 853-862. by Michael Weber, Jonathan J. Davies, David Wittig, et al.Edward J. Oakeley, Michael Haase, Wan L. Lam, Dirk Schübeler posted to 2005 dna_methylation epigenetics epigenomics methylome by suizifish on 2009-06-07 06:37:18 as along with 8 people rschulz pdexheimer huiminC tabu epigenetics vmsr slevy03 oelemento
	Histone modifications at human enhancers reflect global cell-type-specific gene expression [My Copy] Nature, Vol. 459, No. 7243. (18 March 2009), pp. 108-112. by Nathaniel D. Heintzman, Gary C. Hon, R. David Hawkins, et al.Pouya Kheradpour, Alexander Stark, Lindsey F. Harp, Zhen Ye, Leonard K. Lee, Rhona K. Stuart, Christina W. Ching, Keith A. Ching, Jessica E. Antosiewicz-Bourget, Hui Liu, Xinmin Zhang, Roland D. Green, Victor V. Lobanenkov, Ron Stewart, James A. Thomson, Gregory E. Crawford, Manolis Kellis, Bing Ren posted to tissue-specific epigenomics histone methylation methylome tissue by frohike on 2009-04-27 21:49:28 as along with 16 people and 2 groups akakak suizifish RyuOgawa inesdesantiago gdb djkt tonamswish t08681mn akundaje leliavski scjparker fenghezi TRHvidsten humburg idonaldson sebastien_vigneau Epigenetics CTCF
	DNA methylation profiling of human chromosomes 6, 20 and 22. [My Copy] Nat Genet (29 October 2006) by Florian Eckhardt, Joern Lewin, Rene Cortese, et al.Vardhman K K. Rakyan, John Attwood, Matthias Burger, John Burton, Tony V V. Cox, Rob Davies, Thomas A A. Down, Carolina Haefliger, Roger Horton, Kevin Howe, David K K. Jackson, Jan Kunde, Christoph Koenig, Jennifer Liddle, David Niblett, Thomas Otto, Roger Pettett, Stefanie Seemann, Christian Thompson, Tony West, Jane Rogers, Alex Olek, Kurt Berlin, Stephan Beck posted to 2006 bioinformatics dna_methylation epigenetics epigenomics methylome by suizifish on 2009-04-20 06:32:46 as along with 4 people plofje shigepong epigenetics jo_davies
	Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. [My Copy] Cell, Vol. 126, No. 6. (22 September 2006), pp. 1189-1201. by X. Zhang, J. Yazaki, A. Sundaresan, et al.S. Cokus, S. W. Chan, H. Chen, I. R. Henderson, P. Shinn, M. Pellegrini, S. E. Jacobsen, J. R. Ecker posted to 2006 dna_methylation epigenetics method methylome by suizifish on 2009-03-30 14:42:40 as along with 5 people and 1 group hroest lptolik kaarsinogen kengg tinahu Plantandetc
	A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis [My Copy] Nature Biotechnology, Vol. 26, No. 7. (08 July 2008), pp. 779-785. by Thomas A. Down, Vardhman K. Rakyan, Daniel J. Turner, et al.Paul Flicek, Heng Li, Eugene Kulesha, Stefan Graf, Nathan Johnson, Javier Herrero, Eleni M. Tomazou, Natalie P. Thorne, Liselotte Backdahl, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Richard Durbin, Simon Tavare, Stephan Beck posted to batman bayesian chip-seq deconvolution epigenome genome-wide medip medip-seq methylome by sebastien_vigneau on 2009-03-19 15:21:29 as along with 9 people and 1 group fabrices druvus timhubbard mmartin rschulz bpcusack slevy03 oelemento guhjy KCL & UCL Bioinformatics
	The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores [My Copy] Nature Genetics, Vol. 41, No. 2. (18 January 2009), pp. 178-186. by Rafael A. Irizarry, Christine Ladd-Acosta, Bo Wen, et al.Zhijin Wu, Carolina Montano, Patrick Onyango, Hengmi Cui, Kevin Gabo, Michael Rongione, Maree Webster, Hong Ji, James B. Potash, Sarven Sabunciyan, Andrew P. Feinberg posted to cancer colon_cancer dna_methylation methylome transcriptional_regulation transcriptome by felsani on 2009-02-08 15:43:52 as along with 6 people jcolacino saravana jfr suizifish wpuszyk misonneh
	A human B cell methylome at 100âbase pair resolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 3. (20 January 2009), pp. 671-678. by Tibor A. Rauch, Xiwei Wu, Xueyan Zhong, Arthur D. Riggs, Gerd P. Pfeifer posted to b-cell dna-methylation epigenetics human methylome by rschulz to the group Epigenetics on 2009-01-28 14:00:10 as along with 1 person oelemento
	The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation. [My Copy] Nature genetics, Vol. 41, No. 1. (21 January 2009), pp. 125-129. by Jing Wang, Sarah Hevi, Julia K. Kurash, et al.Hong Lei, Frédérique Gay, Jeffrey Bajko, Hui Su, Weitao Sun, Hua Chang, Guoliang Xu, François Gaudet, En Li, Taiping Chen posted to epigenetics epigenome methylation methylome by epigenetics on 2009-01-09 12:08:31 as along with 2 people ashkelon13 guhjy
	The methylome: approaches for global DNA methylation profiling [My Copy] Trends in Genetics, Vol. In Press, Corrected Proof by Stephan Beck, Vardhman K. Rakyan posted to dna global methylation methylome profilingmethods by bertelsen on 2008-10-24 10:39:26 as along with 3 people misonneh guhjy kjglennie
	Epigenomics: Detailed analysis [My Copy] Nature, Vol. 454, No. 7205. (06 August 2008), pp. 795-798. by Laura Bonetta posted to epigenomics methylome technology by frohike on 2008-09-16 09:47:38 as along with 4 people and 1 group Zephyrus misonneh reyez jkeilty Roswell Cancer Crosstalk
	Moving AHEAD with an international human epigenome project. [My Copy] Nature, Vol. 454, No. 7205. (7 August 2008), pp. 711-715. by American Association for Cancer Research Human Epigenome Task Force, European Union, Network of Excellence, Scientific Advisory Board posted to epigenomics human methylation methylome by frohike on 2008-09-16 09:43:01 as along with 3 people misonneh inesdesantiago jfr
	Prognostic DNA methylation biomarkers in ovarian cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 12, No. 9. (1 May 2006), pp. 2788-2794. by S. H. Wei, C. Balch, H. H. Paik, et al.Y. S. Kim, R. L. Baldwin, S. Liyanarachchi, L. Li, Z. Wang, J. C. Wan, R. V. Davuluri, B. Y. Karlan, G. Gifford, R. Brown, S. Kim, T. H. Huang, K. P. Nephew posted to epigenomics methylation methylome prognosis by frohike on 2008-09-15 12:29:10 as
	Aberrant DNA methylation as a cancer-inducing mechanism. [My Copy] Annual review of pharmacology and toxicology, Vol. 45 (2005), pp. 629-656. by M. Esteller posted to methylation methylome prognosis by frohike on 2008-09-15 12:26:59 as
	The power and the promise of DNA methylation markers. [My Copy] Nature reviews. Cancer, Vol. 3, No. 4. (April 2003), pp. 253-266. by P. W. Laird posted to epigenomics methylation methylome by frohike on 2008-09-15 11:58:46 as along with 2 people amabeise misonneh
	Cancer epigenomics: DNA methylomes and histone-modification maps [My Copy] Nature Reviews Genetics, Vol. 8, No. 4. (06 March 2007), pp. 286-298. by Manel Esteller posted to epigenomics breast-cancer histone methylome by frohike on 2008-09-02 09:56:18 as along with 4 people suizifish hkuhn rschulz srp33
	Epigenetic gene silencing in cancer: the DNA hypermethylome. [My Copy] Human molecular genetics, Vol. 16 Spec No 1 (15 April 2007) by M. Esteller posted to epigenomics breast-cancer methylome by frohike on 2008-09-02 09:55:53 as along with 1 person Zephyrus
	Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000116. by Cassandra R. Farthing, Gabriella Ficz, Ray K. Ng, et al.Chun-Fung Chan, Simon Andrews, Wendy Dean, Myriam Hemberger, Wolf Reik posted to development embryology epigenetics imprinting methylation methylome reproduction by epigenetics on 2008-07-29 13:53:38 as along with 5 people rschulz MSchipper Schmidtc djkt inesdesantiago
	An analytical pipeline for genomic representations used for cytosine methylation studies [My Copy] Bioinformatics (18 March 2008), btn096. by Reid F. Thompson, Mark Reimers, Batbayar Khulan, et al.Mathieu Gissot, Todd A. Richmond, Quan Chen, Xin Zheng, Kami Kim, John M. Greally posted to bioinformatics epigenetics epigenome methylation methylome by epigenetics on 2008-04-10 22:56:08 as along with 1 person renatomilani
	Cytosine methylation profiling of cancer cell lines [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4844-4849. by Mathias Ehrich, Julia Turner, Peter Gibbs, et al.Lara Lipton, Mara Giovanneti, Charles Cantor, Dirk van den Boom posted to cancer epigenetics epigenome methylation methylome by epigenetics on 2008-04-10 22:50:29 as
	Genome-wide analysis of DNA methylation patterns [My Copy] Development (10 October 2007), dev.001131. by Daniel Zilberman, Steven Henikoff posted to methylation methylome by sebastien_vigneau on 2007-10-31 16:34:21 as along with 5 people christoffpale shikin dchughes epigenetics guhjy
	Genome-wide profiling of promoter methylation in human [My Copy] Oncogene, Vol. aop, No. current. by I. Hatada, M. Fukasawa, M. Kimura, et al.S. Morita, K. Yamada, T. Yoshikawa, S. Yamanaka, C. Endo, A. Sakurada, M. Sato, T. Kondo, A. Horii, T. Ushijima, H. Sasaki posted to methods methylome by epigenetics on 2007-07-03 23:48:04 as
	A Genomic Scanning Method for Higher Organisms Using Restriction Sites as Landmarks [My Copy] PNAS, Vol. 88, No. 21. (1 November 1991), pp. 9523-9527. by Hatada, Y. Hayashizaki, S. Hirotsune, H. Komatsubara, T. Mukai posted to epigenetics methods methylation methylome by epigenetics on 2007-07-03 10:36:59 as
	Identification of an imprinted U2af binding protein related sequence on mouse chromosome 11 using the RLGS method [My Copy] Nat Genet, Vol. 6, No. 1. (January 1994), pp. 33-40. by Y. Hayashizaki, H. Shibata, S. Hirotsune, et al.H. Sugino, Y. Okazaki, N. Sasaki, K. Hirose, H. Imoto, H. Okuizumi, M. Muramatsu, H. Komatsubara, T. Shiroishi, K. Moriwaki, M. Katsuki, N. Hatano, H. Sasaki, T. Ueda, N. Mise, N. Takagi, C. Plass, V. M. Chapman posted to epigenetics epigenome methods methylation methylome by epigenetics on 2007-07-03 10:35:54 as
	DNA Methylation Analysis by MethyLight Technology [My Copy] Methods, Vol. 25, No. 4. (December 2001), pp. 456-462. by Binh N. Trinh, Tiffany I. Long, Peter W. Laird posted to epigenetics epigenome methods methylation methylome by epigenetics on 2007-07-03 10:29:08 as
	The emerging science of epigenomics. [My Copy] Hum Mol Genet, Vol. 15 Spec No 1 (15 April 2006) by P. A. Callinan, A. P. Feinberg posted to bioinformatics epigenetics epigenome methods methylome by epigenetics on 2007-07-03 10:26:26 as along with 2 people and 2 groups pawelsobko dchughes G4ID Genetics-of-Gambling
	Microarray-based DNA methylation profiling: technology and applications. [My Copy] Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 528-542. by A. Schumacher, P. Kapranov, Z. Kaminsky, et al.J. Flanagan, A. Assadzadeh, P. Yau, C. Virtanen, N. Winegarden, J. Cheng, T. Gingeras, A. Petronis posted to methylome microarray by tuck on 2006-04-12 21:58:16 as along with 2 people shikin tvdbulck
	DNA methylation and human disease. [My Copy] Nat Rev Genet, Vol. 6, No. 8. (August 2005), pp. 597-610. by K. D. Robertson posted to cancer methylome by tuck on 2006-02-09 03:43:12 as along with 2 people misonneh ramensky
	The epigenetic progenitor origin of human cancer. [My Copy] Nature reviews. Genetics, Vol. 7, No. 1. (January 2006), pp. 21-33. by A. P. Feinberg, R. Ohlsson, S. Henikoff posted to cancer methylome stemcell by tuck on 2006-02-09 03:23:30 as along with 12 people and 3 groups galka8_diploma suizifish Zephyrus misonneh strands sebastien_vigneau ealloza Garamonfok loopback007 waghsk tdmckee srp33 Roswell Cancer Crosstalk BioinfoCIPF Cancer_Stem_Cells
	Promoter methylation and inactivation of tumour-suppressor genes in oral squamous-cell carcinoma [My Copy] The Lancet Oncology, Vol. 7, No. 1. (January 2006), pp. 77-82. by Patrick K. Ha, Joseph A. Califano posted to cancer methylome by tuck on 2006-02-09 03:02:51 as
	Epigenetic Regulation of Normal and Cancer Stem Cells [My Copy] Ann NY Acad Sci, Vol. 1044, No. 1. (1 June 2005), pp. 90-93. by Michael F. Clarke posted to epigenetics methylome stemcell by tuck on 2005-12-17 04:39:56 as along with 1 person balicea
	Hypomethylation-linked activation of PAX2 mediates tamoxifen-stimulated endometrial carcinogenesis [My Copy] Nature, Vol. 438, No. 7070. (15 December 2005), pp. 981-987. by Huijian Wu, Yupeng Chen, Jing Liang, et al.Bin Shi, Ge Wu, Ying Zhang, Dan Wang, Ruifang Li, Xia Yi, Hua Zhang, Luyang Sun, Yongfeng Shang posted to carcinogenesis methylome transcription by tuck on 2005-12-14 21:22:57 as along with 1 person misonneh
	Site-specific DNA methylation by a complex of PU.1 and Dnmt3a/b. [My Copy] Oncogene (5 December 2005) by M Suzuki, T Yamada, F Kihara-Negishi, et al.T Sakurai, E Hara, D G G. Tenen, N Hozumi, T Oikawa posted to hematopoiesis methylome transcription by tuck on 2005-12-14 12:34:06 as
	Stable loss of global DNA methylation in the radiation-target tissue--A possible mechanism contributing to radiation carcinogenesis? [My Copy] Biochemical and Biophysical Research Communications, Vol. 337, No. 2. (18 November 2005), pp. 526-533. by Igor Koturbash, Igor Pogribny, Olga Kovalchuk posted to hematopoiesis methylome radiation by tuck on 2005-12-01 18:19:58 as
	$My PDF pogribny_05_fractionated.pdf$ Fractionated Low-Dose Radiation Exposure Leads to Accumulation of DNA Damage and Profound Alterations in DNA and Histone Methylation in the Murine Thymus [My Copy] Mol Cancer Res, Vol. 3, No. 10. (1 October 2005), pp. 553-561. by Igor Pogribny, Igor Koturbash, Volodymyr Tryndyak, et al.Darryl Hudson, Sandie M. Stevenson, Olga Sedelnikova, William Bonner, Olga Kovalchuk posted to hematopoiesis methylome radiation by tuck on 2005-12-01 18:16:43 as
	DNA Methylation Profiling of the Human Major Histocompatibility Complex: A Pilot Study for the Human Epigenome Project [My Copy] PLoS Biol, Vol. 2, No. 12. (23 November 2004), e405. by Vardhman K. Rakyan, Thomas Hildmann, Karen L. Novik, et al.Jörn Lewin, Jörg Tost, Antony V. Cox, T. Dan Andrews, Kevin L. Howe, Thomas Otto, Alexander Olek, Judith Fischer, Ivo G. Gut, Kurt Berlin, Stephan Beck posted to methylome by tuck on 2005-11-21 02:14:38 as along with 6 people jmstat suizifish misonneh mc_hamming kaarsinogen balicea

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methylation	20
epigenetics	18
epigenomics	11
epigenome	9
dna_methylation	6
methods	6
bioinformatics	5
cancer	5
human	5
2006	3
b-cell	3
dna-methylation	3
genome-wide	3
hematopoiesis	3
tissue-specific	3
breast-cancer	2
data_set	2
dna	2
fibroblast	2
histone	2
medip	2
prognosis	2
radiation	2
stem-cell	2
stemcell	2
transcription	2
2005	1
2008	1
base	1
batman	1
bayesian	1
carcinogenesis	1
chip-seq	1
colon_cancer	1
deconvolution	1
development	1
differences	1
embryology	1
epigenetic	1
epigenomic	1
global	1
imprinting	1
leukemia	1
lymphoma	1
medip-seq	1
method	1
microarray	1
oncology	1
polyadenylation	1
profilingmethods	1
reference-methylome	1
reproduction	1
resolution	1
sequencing	1
technology	1
tissue	1
transcriptional_regulation	1
transcriptome	1
widespread	1

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