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Tag microarray [886 articles]

Recent papers classified by the tag microarray.
  • Assessing the Significance of Conserved Genomic Aberrations Using High Resolution Genomic Microarrays
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e143.
    by Mitchell Guttman, Carolyn Mies, Katarzyna Dudycz-Sulicz, Sharon J Diskin, Don A Baldwin, Christian J Stoeckert, Gregory R Grant
    posted to genome microarray by zwang on 2007-09-03 15:17:14 as * along with 3 people and 2 groups jfr rdiaz ealloza Bioinformatics BioinfoCIPF
  • Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast
    Mol Syst Biol, Vol. 3 (5 June 2007)
    by Ronish Gupta, Bart Kus, Christopher Fladd, James Wasmuth, Raffi Tonikian, Sachdev Sidhu, Nevan J Krogan, John Parkinson, Daniela Rotin
    posted to interaction microarray protein yeast by zwang on 2007-06-06 01:20:33 as **
  • Domain-enhanced analysis of microarray data using GO annotations
    Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1225-1234.
    by Jiajun Liu, Jacqueline M Hughes-Oliver, Alan J Menius
    posted to annotation domain microarray by zwang on 2007-05-29 02:25:26 as ** along with 2 people jyuh jfr
  • Comparing whole genomes using DNA microarrays
    Nat Rev Genet, Vol. 9, No. 4. (April 2008), pp. 291-302.
    by David Gresham, Maitreya J Dunham, David Botstein
    posted to dna genome microarray by zwang on 2008-03-20 13:03:01 as ** along with 5 people thomaskelder giovenko shinetmt jo_davies jyuh
  • Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae
    Nucleic Acids Research, Vol. 35, No. 1. (January 2007), pp. 279-287.
    by Vu, Tra Thi, Vohradsky, Jiri
    posted to microarray regulation transcription yeast by zwang on 2007-04-16 13:48:37 as **
  • A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 801-806.
    by Siobhan M Brady, David A Orlando, Ji-Young Lee, Jean Y Wang, Jeremy Koch, Jose R Dinneny, Daniel Mace, Uwe Ohler, Philip N Benfey
    posted to clustering expression fluorescent microarray by zwang on 2007-11-05 14:32:26 as * along with 2 people kengg cjeans
  • Advantages and limitations of microarray technology in human cancer.
    Oncogene, Vol. 22, No. 42. (29 September 2003), pp. 6497-6507.
    by G Russo, C Zegar, A Giordano
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:42:08 as ** along with 1 person junehlee
  • Experiments using microarray technology: limitations and standard operating procedures.
    J Endocrinol, Vol. 178, No. 2. (August 2003), pp. 195-204.
    by T Forster, D Roy, P Ghazal
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:36:03 as **
  • Gene selection in microarray data: the elephant, the blind men and our algorithms.
    Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 370-376.
    by G Stolovitzky
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:35:40 as *****
  • Post-analysis follow-up and validation of microarray experiments.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 509-514.
    by RF Chuaqui, RF Bonner, CJ Best, JW Gillespie, MJ Flaig, SM Hewitt, JL Phillips, DB Krizman, MA Tangrea, M Ahram, WM Linehan, V Knezevic, MR Emmert-Buck
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:33:58 as ** along with 2 people and 1 group stsaft irenas dbk-lab
  • Diagnostic and prognostic prediction using gene expression profiles in high-dimensional microarray data.
    Br J Cancer, Vol. 89, No. 9. (3 November 2003), pp. 1599-1604.
    by R Simon
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:33:23 as **
  • Navigating gene expression using microarrays--a technology review.
    Nat Cell Biol, Vol. 3, No. 8. (August 2001)
    by A Schulze, J Downward
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:32:23 as ** along with 7 people and 2 groups mcox numata alokm balicea dchughes jo_davies ale G4ID Genetics-of-Gambling
  • The use and analysis of microarray data.
    Nat Rev Drug Discov, Vol. 1, No. 12. (December 2002), pp. 951-960.
    by A Butte
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:31:26 as ** along with 2 people and 1 group irenas numata dbk-lab
  • MicroRNA expression profiles classify human cancers
    Nature, Vol. 435, No. 7043., pp. 834-838.
    by Jun Lu, Gad Getz, Eric A Miska, Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L Ebert, Raymond H Mak, Adolfo A Ferrando, James R Downing, Tyler Jacks, Robert R Horvitz, Todd R Golub
    posted to microarray by zhouyu on 2008-05-10 04:25:45 as ** along with 10 people and 2 groups giovenko srp33 tmmurali ajeffs tuck mtagaya ealloza frohike capitall maralena microRNA Bioinformatics
  • Mining microarray data at NCBI's Gene Expression Omnibus (GEO)*.
    Methods Mol Biol, Vol. 338 (2006), pp. 175-190.
    by T Barrett, R Edgar
    posted to microarray by zhouyu on 2008-05-10 04:12:46 as ** along with 5 people ablejec hpiwowar jyuh frohike waszak
  • Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alexandre Kuhn, Ruth L Carter, Mauro Delorenzi
    posted to microarray by zhouyu on 2008-05-10 04:09:34 as ** along with 9 people bertelsen ablejec jyuh jfr balicea dullhunk ghattem RamuAnandakrishnan heliopais
  • EzArray: a web-based highly automated Affymetrix expression array data management and analysis system
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuerong Zhu, Yuelin Zhu, Wei Xu
    posted to microarray by zhouyu on 2008-05-10 04:08:11 as ** along with 4 people jfr jyuh cannin heliopais
  • MARS: microarray analysis, retrieval, and storage system.
    BMC Bioinformatics, Vol. 6 (2005)
    by M Maurer, R Molidor, A Sturn, J Hartler, H Hackl, G Stocker, A Prokesch, M Scheideler, Z Trajanoski
    posted to microarray by zhouyu on 2008-05-10 04:07:25 as ** along with 1 person jyuh
  • GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor.
    Bioinformatics (12 May 2007)
    by Sean Davis, Paul S S Meltzer
    posted to microarray by zhouyu on 2008-05-10 04:06:48 as ** along with 6 people bertelsen ablejec giovenko jyuh jfr ugengma
  • AMDA: an R package for the automated microarray data analysis
    BMC Bioinformatics, Vol. 7 (06 July 2006), 335.
    by Mattia Pelizzola, Norman Pavelka, Maria Foti, Paola Ricciardi-Castagnoli
    posted to microarray by zhouyu on 2008-05-10 04:05:41 as ** along with 1 person jyuh
  • Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.
    Nucleic acids research (7 May 2008)
    by Alexander E E Ivliev, Peter A C A 't Hoen, Michel P P Villerius, Johan T T den Dunnen, Bernd W W Brandt
    posted to microarray by zhouyu on 2008-05-13 05:47:41 as ** along with 1 person jyuh
  • Spectral biclustering of microarray data: coclustering genes and conditions.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 703-716.
    by Y Kluger, R Basri, JT Chang, M Gerstein
    posted to biclustering data microarray of spectral by yuval on 2005-12-06 20:42:02 as ***** along with 6 people tvdbulck rmj001 tuck filippone shigepong dps
  • Final words: cell age and cell cycle are unlinked.
    Trends Biotechnol, Vol. 22, No. 6. (June 2004), pp. 277-278.
    by PT Spellman, G Sherlock
    posted to cell-synchronisation microarray by yoh on 2006-01-27 11:08:56 as **
  • Rejoinder: whole-culture synchronization cannot, and does not, synchronize cells.
    Trends Biotechnol, Vol. 22, No. 6. (June 2004), pp. 274-276.
    by S Cooper
    posted to cell-synchronisation microarray by yoh on 2006-01-27 11:07:30 as **
  • Reply: whole-culture synchronization - effective tools for cell cycle studies.
    Trends Biotechnol, Vol. 22, No. 6. (June 2004), pp. 270-273.
    by PT Spellman, G Sherlock
    posted to cell-synchronisation microarray by yoh on 2006-01-27 11:06:47 as **
  • Is whole-culture synchronization biology's 'perpetual-motion machine'?
    Trends Biotechnol, Vol. 22, No. 6. (June 2004), pp. 266-269.
    by S Cooper
    posted to cell-synchronisation microarray by yoh on 2006-01-27 11:05:53 as **
  • Ontological analysis of gene expression data: current tools, limitations, and open problems.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595.
    by P Khatri, S Drăghici
    posted to microarray ontology review tools by yggdrasil on 2008-04-21 10:00:46 as ** along with 9 people marck ellakat Cortel dragonrez macavity1g Garamonfok sgoetz heliopais kristen
  • Role of human hepatocyte nuclear factor 4alpha in the expression of drug-metabolizing enzymes and transporters in human hepatocytes assessed by use of small interfering RNA.
    Drug Metab Pharmacokinet, Vol. 22, No. 4. (August 2007), pp. 287-298.
    by Y Kamiyama, T Matsubara, K Yoshinari, K Nagata, H Kamimura, Y Yamazoe
    posted to hnf4 microarray targets by yevishere on 2008-01-02 23:36:13 as **
  • Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
    Genome Biology, Vol. 2, No. 2. (2001), pp. research0004.1-research0004.13.
    by Brian Haab, Maitreya Dunham, Patrick Brown
    posted to microarray pbm by yevishere on 2008-03-14 20:48:53 as **
  • Pre-filtering improves reliability of Affymetrix GeneChips results when used to analyze gene expression in complex tissues.
    Mol Cell Probes (28 November 2007)
    by Dario Greco, Damiana Leo, Umberto di Porzio, Carla Perrone Capano, Petri Auvinen
    posted to affymetrix analysis microarray by yevishere on 2008-01-04 00:34:49 as ** along with 1 person Terkko
  • Quality assessment of Affymetrix GeneChip data.
    OMICS, Vol. 10, No. 3. (2006), pp. 358-368.
    by S Heber, B Sick
    posted to analysis microarray by yevishere on 2008-01-04 00:23:59 as ** along with 3 people bertelsen jfr maldi
  • Characterization of three growth hormone-responsive transcription factors preferentially expressed in adult female liver.
    Endocrinology, Vol. 148, No. 7. (July 2007), pp. 3327-3337.
    by EV Laz, MG Holloway, CS Chen, DJ Waxman
    posted to expression hnf4 microarray by yevishere on 2008-01-03 23:20:58 as **
  • Gene expression profiling and differentiation assessment in primary human hepatocyte cultures, established hepatoma cell lines, and human liver tissues.
    Toxicol Appl Pharmacol, Vol. 222, No. 1. (1 July 2007), pp. 42-56.
    by KM Olsavsky, JL Page, MC Johnson, H Zarbl, SC Strom, CJ Omiecinski
    posted to expression hnf4 microarray by yevishere on 2008-01-03 23:14:38 as **
  • Cyanine dye dUTP analogs for enzymatic labeling of DNA probes.
    Nucleic Acids Res, Vol. 22, No. 15. (11 August 1994), pp. 3226-3232.
    by H Yu, J Chao, D Patek, R Mujumdar, S Mujumdar, AS Waggoner
    posted to dutp labeling microarray by yevishere on 2008-01-04 22:04:27 as **
  • Fluorescent high-density labeling of DNA: error-free substitution for a normal nucleotide
    Journal of Biotechnology, Vol. 86, No. 3. (13 April 2001), pp. 237-253.
    by Zeno Foldes-Papp, Bernhard Angerer, Waltraud Ankenbauer, Rudolf Rigler
    posted to dutp labeling microarray by yevishere on 2008-01-04 21:28:10 as **
  • Development of a DNA-Labeling System for Array-Based Comparative Genomic Hybridization
    J Biomol Tech, Vol. 16, No. 2. (1 June 2005), pp. 104-111.
    by Pauline T Lieu, Peter Jozsi, Patrick Gilles, Todd Peterson
    posted to dna labeling microarray by yevishere on 2008-01-04 21:11:29 as **
  • MILANO - custom annotation of microarray results using automatic literature searches
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Ran Rubinstein, Itamar Simon
    posted to literature-based-annotation microarray by yas on 2008-01-07 09:35:01 as ** along with 1 person and 1 group bundschu generif_paper
  • ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses.
    BMC bioinformatics, Vol. 9 Suppl 6 (2008)
    by TH Stokes, JT Torrance, H Li, MD Wang
    posted to wiki microarray knowledge-sharing by yas on 2008-07-01 03:31:27 as ** along with 2 people jyuh thomaskelder
  • Clustering Microarray-Derived Gene Lists through Implicit Literature Relationships.
    Bioinformatics (30 May 2007)
    by Mark F F Burkart, Jonathan D D Wren, Jason I I Herschkowitz, Charles M M Perou, Harold R R Garner
    posted to literature-based-discovery microarray by yas on 2007-08-15 15:23:38 as ** along with 5 people and 1 group jyuh jfr dullhunk ghattem Barend T_lab
  • Constructing biological networks through combined literature mining and microarray analysis: a LMMA approach.
    Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2143-2150.
    by S Li, L Wu, Z Zhang
    posted to microarray text-mining by yas on 2008-02-26 09:38:27 as ** along with 1 person jyuh
  • Functional profiling of microarray experiments using text-mining derived bioentities
    Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3098-3099.
    by Pablo Minguez, Fatima Al-Shahrour, David Montaner, Joaquin Dopazo
    posted to microarray text-mining by yas on 2008-02-26 09:35:33 as ** along with 3 people jyuh heliopais dmontaner
  • Options available--from start to finish--for obtaining expression data by microarray.
    Nat Genet, Vol. 21, No. 1 Suppl. (January 1999), pp. 25-32.
    by DD Bowtell
    posted to microarray by yas on 2005-11-28 12:22:57 as ** along with 1 person and 1 group leelarcombe T_lab
  • Metagenes and molecular pattern discovery using matrix factorization.
    Proc Natl Acad Sci U S A, Vol. 101, No. 12. (23 March 2004), pp. 4164-4169.
    by JP Brunet, P Tamayo, TR Golub, JP Mesirov
    posted to microarray by yas on 2006-03-07 03:48:37 as ** along with 9 people and 1 group kentsis dragonrez radek balicea yama_tah aviad_work ivokwee GeeSharpMinor kintoki T_lab
  • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1600-1607.
    by Alexa, Adrian, Rahnenfuhrer, Jorg, Lengauer, Thomas
    posted to microarray ontology by yas on 2007-07-23 10:03:05 as ** along with 3 people and 2 groups marck sgoetz ealloza T_lab BioinfoCIPF
  • Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation
    BMC Bioinformatics, Vol. 8 (18 January 2007), 14.
    by Rob Jelier, Guido Jenster, Lambert CJ Dorssers, Bas J Wouters, Peter JM Hendriksen, Barend Mons, Ruud Delwel, Jan A Kors
    posted to microarray text-mining by yas on 2007-07-23 08:03:36 as ** along with 4 people and 1 group jfr hpiwowar fisherp Barend T_lab
  • Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data
    BMC Bioinformatics, Vol. 7 (04 July 2006), 330.
    by Seon-Young Kim, Yongsung Kim
    posted to tf promoter microarray mammal human_genome genome expression chip by xwbcn on 2007-01-13 04:28:37 as ** along with 2 people jfr Ao_Li2007
  • Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis.
    Plant Physiol, Vol. 141, No. 4. (August 2006), pp. 1219-1232.
    by C Benedict, M Geisler, J Trygg, N Huner, V Hurry
    posted to arabidopsis chip cold comparative_study data_mining expression genome microarray motif networks transcriptome by xwbcn on 2007-06-11 15:16:05 as ** along with 1 person natstreet
  • Genome-wide analysis of spatial and temporal gene expression in rice panicle development
    The Plant Journal, Vol. 46, No. 3. (May 2006), pp. 503-511.
    by Ikuyo Furutani, Shin Sukegawa, Junko Kyozuka
    posted to chip expression flowering microarray rice by xwbcn on 2006-05-30 18:56:54 as ***
  • Tissue-driven hypothesis of genomic evolution and sequence-expression correlations.
    Proc Natl Acad Sci U S A (14 February 2007)
    by Xun Gu, Zhixi Su
    posted to evolution expression gene_family genome microarray by xwbcn on 2007-02-25 15:03:41 as ** along with 4 people gpalidwor shigepong cjeans ghattem
  • CARRIE web service: automated transcriptional regulatory network inference and interactive analysis.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by PM Haverty, MC Frith, Z Weng
    posted to database microarray motif by xwbcn on 2006-04-23 18:55:37 as ** along with 2 people dquest heliopais
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