Tag microbial-ecology [144 articles] Export Sort

Recent papers classified by the tag microbial-ecology.

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	Protistan Diversity Estimates Based on 18S rDNA from Seawater Incubations in the Western North Atlantic<sup>1</sup> [My Copy] The Journal of Eukaryotic Microbiology, Vol. 52, No. 2. (r 2005), pp. 95-106. by Peter D. Countway, Rebecca J. Gast, I. Pratik Sava, David A. Caron posted to rrna protists microbial-ecology microbial-diversity methods diversity 18srrna 18s by idoerg on 2009-11-26 20:24:15 as along with 1 person and 1 group jdelcampo Microbial-Ecology
	A Contemporary Microbially Maintained Subglacial Ferrous "Ocean" [My Copy] Science, Vol. 324, No. 5925. (17 April 2009), pp. 397-400. by Jill A. Mikucki, Ann Pearson, David T. Johnston, et al.Alexandra V. Turchyn, James Farquhar, Daniel P. Schrag, Ariel D. Anbar, John C. Priscu, Peter A. Lee posted to toblog microbiology microbial-ecology microbial-diversity antarctica by idoerg on 2009-08-26 13:24:31 as along with 5 people michaelbarton kinestetika jmeppley trfield neils
	Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. [My Copy] PLoS biology, Vol. 6, No. 7. (22 July 2008), e177. by S. L. Simmons, G. Dibartolo, V. J. Denef, D. S. Goltsman, M. P. Thelen, J. F. Banfield posted to metagenomics microbial-diversity microbial-ecology mlst by idoerg on 2009-07-02 00:27:03 as along with 3 people and 1 group sharpton druvus djkt iSEEM
	The uncultured microbial majority. [My Copy] Annu Rev Microbiol, Vol. 57 (2003), pp. 369-394. by M. S. Rappé, S. J. Giovannoni posted to diversity microbial-ecology microbiology by idoerg on 2009-06-19 22:08:14 as along with 3 people azazello skato_toyaku jmeppley
	Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 30. (29 July 2008), pp. 10583-10588. by Jennifer F. Biddle, Sorel Fitz-Gibbon, Stephan C. Schuster, Jean E. Brenchley, Christopher H. House posted to community-genomics marine-ecology marine-microbiology microbial-ecology by jmeppley on 2009-06-02 17:00:22 as along with 5 people and 2 groups Thaverkamp michaelbarton sriesenfeld skembel skato_toyaku Microbial-Ecology iSEEM
	Insights into the diversity of eukaryotes in acid mine drainage biofilm communities. [My Copy] Applied and environmental microbiology, Vol. 75, No. 7. (April 2009), pp. 2192-2199. by B. J. Baker, G. W. Tyson, L. Goosherst, J. F. Banfield posted to acid-mine eukaryotes metagenomics microbial-diversity microbial-ecology microbiology by idoerg on 2009-06-01 07:52:26 as
	Microbial community structure and its functional implications [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 193-199. by Jed A. Fuhrman posted to biogeochemistry community-structure microbial-community microbial-ecology by jmeppley on 2009-05-14 19:04:22 as along with 4 people and 1 group hwright Thaverkamp djkt skembel iSEEM
	The microbial ocean from genomes to biomes [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 200-206. by Edward F. Delong posted to biogeochemistry marine-ecology marine-microbiology microbial-ecology by jmeppley on 2009-05-14 19:03:16 as along with 6 people and 2 groups roys stajich Thaverkamp neils djkt skembel Mycology iSEEM
	Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre [My Copy] Environmental Microbiology, Vol. 11, No. 6. (2009), pp. 1358-1375. by Rachel S. Poretsky, Ian Hewson, Shulei Sun, Andrew E. Allen, Jonathan P. Zehr, Mary A. Moran posted to community community-genomics marine-microbiology microbial-ecology transcriptomics by jmeppley on 2009-05-14 18:54:19 as along with 3 people and 1 group kinestetika skembel djkt iSEEM
	Microbial oceanography in a sea of opportunity [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 180-184. by Chris Bowler, David M. Karl, Rita R. Colwell posted to geochemical-cycles geomicrobiology marine-ecosystem marine-microbiology microbial-ecology by jmeppley on 2009-05-14 14:41:50 as along with 3 people and 1 group hwright Thaverkamp skembel Microbial-Ecology
	The otherness of the oceans [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 166-167. by Alexandra Z. Worden, Darcy Mcrose posted to microbial-ecology ocean by Thaverkamp to the group Microbial-Ecology on 2009-05-14 08:08:33 as
	Viruses manipulate the marine environment. [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 207-212. by Forest Rohwer, Rebecca Vega V. Thurber posted to marine microbial-ecology virus by Thaverkamp on 2009-05-14 07:58:28 as along with 5 people and 1 group bmezmer hwright tomhebbron skembel djkt iSEEM
	Identifying microbial diversity in the natural environment: A molecular phylogenetic approach [My Copy] Trends in Biotechnology, Vol. 14, No. 6. (June 1996), pp. 190-197. by P. Hugenholtz, N. Pace posted to microbial-diversity microbial-ecology microbiology review by idoerg on 2009-05-06 18:00:53 as
	A Molecular View of Microbial Diversity and the Biosphere [My Copy] Science, Vol. 276, No. 5313. (2 May 1997), pp. 734-740. by Norman R. Pace posted to diversity microbial-diversity microbial-ecology microbiology by idoerg on 2009-05-05 19:33:28 as along with 4 people and 1 group azazello jmeppley jdelcampo mcox Microbial-Ecology
	A core gut microbiome in obese and lean twins [My Copy] Nature In Nature, Vol. 457, No. 7228. (30 November 2008), pp. 480-484. by Peter J. Turnbaugh, Micah Hamady, Tanya Yatsunenko, et al.Brandi L. Cantarel, Alexis Duncan, Ruth E. Ley, Mitchell L. Sogin, William J. Jones, Bruce A. Roe, Jason P. Affourtit, Michael Egholm, Bernard Henrissat, Andrew C. Heath, Rob Knight, Jeffrey I. Gordon posted to 16s-rrna human-microbiology microbial-diversity microbial-ecology by jmeppley on 2009-05-05 14:17:15 as along with 11 people and 2 groups danilov Thaverkamp azazello skembel idoerg slevy03 booker djkt jbhiatt Zephyrus guhjy Microbial-Ecology iSEEM
	The gut flora as a forgotten organ. [My Copy] EMBO reports, Vol. 7, No. 7. (July 2006), pp. 688-693. by A. M. O'Hara, F. Shanahan posted to gut microbial-ecology microbiology by idoerg on 2009-05-04 17:52:25 as along with 2 people sameersoi ajaymalik
	Microbial ecology of the gastrointestinal tract. [My Copy] Annual review of microbiology, Vol. 31 (1977), pp. 107-133. by D. C. Savage posted to gut microbial-ecology microbiology by idoerg on 2009-05-04 17:31:43 as
	Introduction to the ecology of the intestinal flora. [My Copy] The American journal of clinical nutrition, Vol. 23, No. 11. (November 1970), pp. 1430-1432. by T. D. Luckey posted to gut microbial-ecology by idoerg on 2009-05-04 17:23:31 as
	The indigenous gastrointestinal microflora [My Copy] Trends in Microbiology, Vol. 4, No. 11. (November 1996), pp. 430-435. by R. Berg posted to gut microbial-ecology by idoerg on 2009-05-04 17:21:51 as along with 1 person dansullivanblk
	High-resolution metagenomics targets specific functional types in complex microbial communities. [My Copy] Nature biotechnology, Vol. 26, No. 9. (17 September 2008), pp. 1029-1034. by Marina G. Kalyuzhnaya, Alla Lapidus, Natalia Ivanova, et al.Alex C. Copeland, Alice C. McHardy, Ernest Szeto, Asaf Salamov, Igor V. Grigoriev, Dominic Suciu, Samuel R. Levine, Victor M. Markowitz, Isidore Rigoutsos, Susannah G. Tringe, David C. Bruce, Paul M. Richardson, Mary E. Lidstrom, Ludmila Chistoserdova posted to community metagenomics microbial-ecology microbiology stable-isotope-probing by Thaverkamp to the group Microbial-Ecology on 2009-05-04 13:55:13 as along with 10 people and 1 group sameersoi EKotlarska jbhiatt jmeppley sriesenfeld skembel apostola Katje Huub_odc zwang microbiology_nijmegen
	The convergence of carbohydrate active gene repertoires in human gut microbes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 39. (30 September 2008), pp. 15076-15081. by Catherine A. Lozupone, Micah Hamady, Brandi L. Cantarel, et al.Pedro M. Coutinho, Bernard Henrissat, Jeffrey I. Gordon, Rob Knight posted to acquisition gene metagenome microbial-ecology microbiology by Thaverkamp on 2009-05-04 07:49:58 as along with 5 people and 1 group cmzmasek sharpton djkt skembel sg45653 iSEEM
	Microbial co-habitation and lateral gene transfer: what transposases can tell us [My Copy] Genome Biology, Vol. 10 (24 April 2009), R45. by Sean, Nikos C. Kyrpides posted to habitat horizontal-gene-transfer microbial-ecology transposons by jmeppley on 2009-04-27 15:08:20 as along with 1 person and 1 group Thaverkamp Microbial-Ecology
	Comparative metagenomics of microbial communities. [My Copy] Science (New York, N.Y.), Vol. 308, No. 5721. (22 April 2005), pp. 554-557. by Susannah Green G. Tringe, Christian von Mering, Arthur Kobayashi, et al.Asaf A. Salamov, Kevin Chen, Hwai W. Chang, Mircea Podar, Jay M. Short, Eric J. Mathur, John C. Detter, Peer Bork, Philip Hugenholtz, Edward M. Rubin posted to bioinformatics communities metagenomics microbial microbial-ecology by Thaverkamp to the group Microbial-Ecology on 2009-04-27 14:20:12 as along with 19 people and 5 groups CorinYeats hwright skembel Scis0000002 idoerg jbhiatt kozo-ni jmeppley AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mcox mjetten jlgreen djkt Orengo Group Journal Picks anammox microbiology_nijmegen Green Lab iSEEM
	Microbial community structure analysis of produced water from a high-temperature North Sea oil-field. [My Copy] Antonie van Leeuwenhoek, Vol. 93, No. 1-2. (b 2008), pp. 37-49. by H. Dahle, F. Garshol, M. Madsen, N. K. Birkeland posted to community-composition microbial-ecology by jmeppley on 2009-04-21 20:24:21 as along with 2 people and 1 group suzannevdVelde Thaverkamp Microbial-Ecology
	Colorful microdiversity of Synechococcus strains (picocyanobacteria) isolated from the Baltic Sea [My Copy] ISME Journal, Vol. 3, No. 4. (4 December 2008), pp. 397-408. by Thomas H. Haverkamp, Daphne Schouten, Marije Doeleman, Ute Wollenzien, Jef Huisman, Lucas J. Stal posted to microbial-diversity microbial-ecology population-genetics population-structure synechoccus by jmeppley on 2009-04-16 14:50:17 as along with 1 person and 1 group Thaverkamp Microbial-Ecology
	Estimating the extent of horizontal gene transfer in metagenomic sequences [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 136. by Javier Tamames, Andres Moya posted to community-genomics hgt-detection horizontal-gene-transfer microbial-ecology population-genetics by jmeppley on 2009-04-16 14:46:44 as along with 4 people and 1 group ajsferreira Thaverkamp neils karfunkel Microbial-Ecology
	Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. [My Copy] Applied and environmental microbiology, Vol. 71, No. 3. (March 2005), pp. 1501-1506. by P. D. Schloss, J. Handelsman posted to microbial-ecology microbiology rarefaction rarefaction-curve by idoerg on 2009-04-15 16:37:04 as along with 4 people and 1 group melissa_wos mcox sconlan djkt iSEEM
	Get the most out of your metagenome: computational analysis of environmental sequence data [My Copy] Current Opinion in Microbiology, Vol. 10, No. 5. (October 2007), pp. 490-498. by Jeroen Raes, Konrad U. Foerstner, Peer Bork posted to bioinformatics metagenomics microbial-ecology microbiology review by idoerg on 2009-04-05 19:03:02 as along with 5 people and 2 groups ajsferreira CorinYeats dakelley Pascalichouchou druvus Orengo Group Journal Picks iSEEM
	Structural and Functional Diversity of the Microbial Kinome. [My Copy] PLoS Biol, Vol. 5, No. 3. (13 March 2007) by Natarajan Kannan, Susan S S. Taylor, Yufeng Zhai, J Craig C. Venter, Gerard Manning posted to kinase kinases metagenomics microbial-ecology protein-kinase by idoerg on 2009-04-05 01:18:33 as along with 4 people jmeppley michC neils renatomilani
	Diversity rankings among bacterial lineages in soil [My Copy] ISME J, Vol. 3, No. 3. (6 November 2008), pp. 305-313. by Noha H. Youssef, Mostafa S. Elshahed posted to diversity metagenomics microbial-ecology microbiology soil species-diversity statistics by idoerg on 2009-04-04 01:17:39 as along with 1 person and 1 group Huub_odc microbiology_nijmegen
	It's all relative: ranking the diversity of aquatic bacterial communities. [My Copy] Environmental microbiology (14 July 2008) by Allison K K. Shaw, Aaron L L. Halpern, Karen Beeson, Bao Tran, J Craig C. Venter, Jennifer B H B. Martiny posted to microbial-ecology microbiology rarefaction rarefaction-curve sampling by idoerg on 2009-04-03 18:55:32 as along with 3 people and 1 group skembel liucun skato_toyaku iSEEM
	Species richness in soil bacterial communities: A proposed approach to overcome sample size bias [My Copy] Journal of Microbiological Methods, Vol. 75, No. 1. (September 2008), pp. 86-91. by Noha H. Youssef, Mostafa S. Elshahed posted to microbial-ecology microbiology rarefaction rarefaction-curve statistics by idoerg on 2009-04-02 01:47:41 as
	Metagenomics: Concept, methodology, ecological inference and recent advances. [My Copy] Biotechnology journal (13 March 2009) by Jagtar Singh, Arvind Behal, Neha Singla, et al.Amit Joshi, Niti Birbian, Sukhdeep Singh, Vandana Bali, Navneet Batra posted to community-genomics microbial-ecology review by jmeppley on 2009-03-27 12:49:25 as along with 1 person Thaverkamp
	Metagenomics approaches in systems microbiology [My Copy] FEMS Microbiology Reviews, Vol. 33, No. 1. (2009), pp. 236-255. by José M. Vieites, María-Eugenia Guazzaroni, Ana Beloqui, Peter N. Golyshin, Manuel Ferrer posted to community-genomics microbial-ecology by jmeppley on 2009-02-20 19:18:03 as along with 4 people Thaverkamp EKotlarska guhjy skato_toyaku
	Molecular eco-systems biology: towards an understanding of community function [My Copy] Nature Reviews Microbiology, Vol. 6, No. 9. (30 June 2008), pp. 693-699. by Jeroen Raes, Peer Bork posted to community-genomics microbial-ecology systems-biology by jmeppley on 2008-12-05 17:55:25 as along with 1 person tomhebbron
	Elevated atmospheric CO2 affects soil microbial diversity associated with trembling aspen [My Copy] Environmental Microbiology, Vol. 10, No. 4. (April 2008), pp. 926-941. by Lesaulnier, Celine, Papamichail, et al. Dimitris, Mccorkle, Sean, Ollivier, Bernard, Skiena, Steven, Taghavi, Safiyh, Zak, Donald, van der Lelie, Daniel posted to metagenomics microbial-ecology by jdelcampo on 2008-10-23 20:46:48 as
	New light on an important microbe in the ocean [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 25. (24 June 2008), pp. 8487-8488. by David L. Kirchman posted to marine microbial-ecology prokaryotes proteorhodopsins by jdelcampo on 2008-10-23 20:38:43 as along with 1 person hwright
	Effect of Temperature and Prey Type on Nutrient Regeneration by an Antarctic Bacterivorous Protist [My Copy] Microbial Ecology, Vol. 56, No. 1. (1 July 2008), pp. 101-111. by Julie Rose, Neil Vora, David Caron posted to microbial-ecology predation protists by jdelcampo on 2008-10-22 21:16:48 as
	Microbial Biogeography: From Taxonomy to Traits [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043. by Jessica L. Green, Brendan J. Bohannan, Rachel J. Whitaker posted to biogeography microbial-ecology taxonomy by jdelcampo to the group Microbial-Ecology on 2008-05-23 17:29:07 as along with 9 people and 5 groups hwright skembel anphony druvus stajich vaulot dbikard djkt dbensasson Savage Lab, UCLA Mycology Papers recommended by the Roscoff Plankton Group Centre de Recherches Interdisciplinaires iSEEM
	The Microbial Engines That Drive Earth's Biogeochemical Cycles [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1034-1039. by Paul G. Falkowski, Tom Fenchel, Edward F. Delong posted to biogeochemistry microbial-ecology by jdelcampo to the group Microbial-Ecology on 2008-05-23 17:25:16 as along with 7 people and 2 groups hwright thegoose2 nurban kinestetika tharris djkt fornstar microbiology_nijmegen iSEEM
	Microbial Ecology of Ocean Biogeochemistry: A Community Perspective [My Copy] Science, Vol. 320, No. 5879. (23 May 2008), pp. 1043-1045. by Suzanne L. Strom posted to biogeochemistry marine microbial-ecology by jdelcampo to the group Microbial-Ecology on 2008-05-23 17:24:50 as along with 5 people and 1 group hwright Thaverkamp bluto djkt fornstar iSEEM
	Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling [My Copy] FEMS Microbiology Ecology, Vol. 63, No. 2. (2008), pp. 249-260. by Martin Hartmann, Franco Widmer posted to microbial-ecology t-rflp by jdelcampo to the group Microbial-Ecology on 2008-05-22 16:53:07 as along with 1 person vrich
	MICROBIOLOGY: A Fifth Pathway of Carbon Fixation [My Copy] Science, Vol. 318, No. 5857. (14 December 2007), pp. 1732-1733. by Rudolf K. Thauer posted to microbial-ecology prokaryotes by jdelcampo to the group Microbial-Ecology on 2008-05-22 16:07:17 as along with 3 people and 1 group Winzer kinestetika marpin microbiology_nijmegen
	Synchrony in aquatic microbial community dynamics [My Copy] ISME J, Vol. 1, No. 1. (0000), pp. 38-47. by Angela D. Kent, Anthony C. Yannarell, James A. Rusak, Eric W. Triplett, Katherine D. Mcmahon posted to community-microbiology marine-microbiology microbial-ecology by jmeppley on 2008-05-14 12:34:12 as along with 1 person vrich
	Seasonal Variation in Microbial Communities and Organic Malodor Indicator Compound Concentrations in Various Types of Swine Manure Storage Systems [My Copy] J Environ Qual, Vol. 31, No. 6. (1 November 2002), pp. 2074-2085. by L. Merrill, L. J. Halverson posted to community-ecology microbial-ecology principal-components-analysis by jmeppley on 2008-04-30 19:16:07 as
	Multivariate analyses in microbial ecology [My Copy] FEMS Microbiology Ecology, Vol. 62, No. 2. (2007), pp. 142-160. by Alban Ramette posted to ecological-statistics microbial-ecology by jmeppley on 2008-04-29 21:07:20 as along with 6 people and 1 group hwright l00cas druvus Stenuite Olaf_Ilzins vrich Microbial-Ecology
	Molecular diversity and ecology of microbial plankton [My Copy] Nature, Vol. 437, No. 7057. (14 September 2005), pp. 343-348. by Stephen J. Giovannoni, Ulrich Stingl posted to diversity evolution marine-microbiology microbial-ecology by jmeppley on 2008-01-10 18:13:24 as along with 6 people and 4 groups hwright Stenuite jdelcampo beatrizfernandez vrich jlgreen African_Lakes_Limnology Microbial-Ecology Green Lab iSEEM
	Culture isolation and culture-independent clone libraries reveal new marine Synechococcus ecotypes with distinctive light and N physiologies. [My Copy] Appl Environ Microbiol, Vol. 72, No. 11. (November 2006), pp. 7193-7204. by N. A. Ahlgren, G. Rocap posted to culture ecotype light marine microbial-ecology phylogeny physiology synechococcus by Thaverkamp to the group Microbial-Ecology on 2007-10-24 14:59:49 as along with 2 people hwright Stenuite
	Quantitative phylogenetic assessment of microbial communities in diverse environments. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130. by C. von Mering, P. Hugenholtz, J. Raes, et al.S. G. Tringe, T. Doerks, L. J. Jensen, N. Ward, P. Bork posted to diversity metagenomics microbial-ecology phylogeny prokaryotes by Thaverkamp to the group Microbial-Ecology on 2007-10-23 16:38:43 as along with 19 people and 6 groups michaelbarton hwright pkm idoerg sriesenfeld skembel kozo-ni ana nickluscombe michC bluto agg19954 TaqSys azazello larsjuhljensen rvgomes mjetten jlgreen djkt structural_bioinformatics Bioinformatics EBI-regulation microbiology_nijmegen Green Lab iSEEM
	DNA evidence for global dispersal and probable endemicity of protozoa [My Copy] BMC Evolutionary Biology, Vol. 7 (13 September 2007), 162. by David Bass, Thomas A. Richards, Lena Matthai, Victoria Marsh, Thomas Cavalier-Smith posted to microbial-ecology protozoa diversity biogeography by Thaverkamp to the group Microbial-Ecology on 2007-10-23 15:33:30 as along with 2 people rabu jdelcampo

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diversity	57
microeukaryotes	41
marine	32
microbiology	23
prokaryotes	20
community-genomics	18
metagenomics	17
microbial-diversity	14
hnf	13
phylogeny	12
freshwater	8
ecology	7
evolution	7
microbial-community	7
biogeochemistry	6
bioinformatics	6
culture	6
marine-microbiology	6
mats	6
community-ecology	5
human-microbiology	5
predation	5
biogeography	4
community	4
genomics	4
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microcosm	4
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protists	4
picoplankton	3
population-genetics	3
population-structure	3
proteorhodopsins	3
rarefaction	3
rarefaction-curve	3
review	3
16s-rrna	2
anoxic	2
bicosoecida	2
clone-libraries	2
communities	2
diversity-heterogeneity	2
ecotype	2
ferroplasma	2
ferroplasma-acidarmanus	2
horizontal-gene-transfer	2
isolation	2
light	2
marine-ecology	2
microbial	2
microbial-distribution	2
niche	2
nutrient-cycles	2
ocean	2
physiology	2
proteomics	2
protozoa	2
rrna	2
stable-isotope-probing	2
statistics	2
synechococcus	2
t-rflp	2
taxonomy	2
x-microcosm	2
z-paper-background	2
18s	1
acid-mine-drainage	1
antarctica	1
bacteria	1
biodiversity	1
biofilm	1
coexistence	1
community-microbiology	1
cooperation	1
disturbance	1
diversity-stability	1
eukaryotes	1
gene	1
gene-expression	1
geomicrobiology	1
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metagenomic-project	1
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microbial-genomics	1
mlst	1
mutualism	1
proteorhodopsin	1
software	1
species-area-relationship	1
species-diversity	1
stability	1
sulfate-reducing-bacteria	1
systems-biology	1
toblog	1
transposons	1
virus	1
x-spatial-scale	1
z-paper-strainer	1

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