Tag modularity [at least 200 articles] Export

Recent papers classified by the tag modularity.

	A nonparametric view of network models and NewmanâGirvan and other modularities [My Copy] Proceedings of the National Academy of Sciences (23 November 2009) by Peter J. Bickel, Aiyou Chen posted to network modularity graph_theory by jjray on 2009-11-24 17:15:42 as
	Spontaneous emergence of modularity in cellular networks [My Copy] Journal of The Royal Society Interface, Vol. 5, No. 18. (6 January 2008), pp. 129-133. by Ricard V. Sole, Sergi Valverde posted to networks modularity by karthikraman on 2009-11-23 12:21:24 as along with 5 people and 2 groups bertelsen mattjb smgomez stefanoallesina mjoach ComplexAdaptiveSystems DSTO-CAS
	Models and computational strategies linking physiological response to molecular networks from large-scale data. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 366, No. 1878. (13 September 2008), pp. 3067-3089. by Fernando Ortega, Katrin Sameith, Nil Turan, et al.Russell Compton, Victor Trevino, Marina Vannucci, Francesco Falciani posted to systems-biology review physiology pathways networks multi-scale molecular modularity models integration complexity by bertelsen on 2009-11-18 20:26:07 as along with 2 people aviad_work cswinburne
	Reverse Engineering of Biological Complexity [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1664-1669. by Marie E. Csete, John C. Doyle posted to reverse_engineering modularity lock-in evolution complexity by tomhebbron on 2009-11-18 18:17:09 as along with 24 people and 6 groups yyfwuhan abhishek_tiwari jdscheff jporternj Scis0000002 reyez camster snuppepuppan barry monod lyongu wnpx ddahlem dullhunk adepace javierFellow livingthingdan kevinemamy anatiferous timflutre dbilar jrbanga edvin bayesian dbk-lab structural_bioinformatics Bioinformatics EisenLab livingthing clab
	Using network function to define and identify community structure [My Copy] (14 Nov 2009) by Sanjeev Chauhan, Michelle Girvan, Edward Ott posted to synchronization modularity by deanmalmgren on 2009-11-17 11:18:06 as along with 3 people and 1 group Kovanen jsaramak mjb Complex Networks Research Group
	Fast algorithm for detecting community structure in networks [My Copy] (22 Sep 2003) by M. E. J. Newman posted to modularity community_structure by AaronMcDaid on 2009-11-16 16:50:11 as along with 30 people and 9 groups RayRa thegoose mussi mpotamias aanthon2 hubcite korakot sriks6711 cantupaz breyten zqshen okarsligil GadgetMan lfriedl skyebend balicea henningpeters ianturton fukken bigbossman dbatorski azygmunt jaspervoskuilen morkfrombork thijswesterveld andreacapocci ganden salvoscellato yumiyamamoto apwesolowski Philosophy_of_Information Blog_and_Wiki_Research kdl GraphVis Ubicomp IMLBloggers Bioinformatics ilps AGH-IISG
	Synchronization and modularity in complex networks [My Copy] The European Physical Journal - Special Topics, Vol. 143, No. 1. (1 April 2007), pp. 19-25. by A. Arenas, A. Díaz-Guilera posted to synchronization modularity complex_network by ganden on 2009-11-16 14:15:39 as along with 3 people tessonec vtraag muraken
	Functional Partitioning of Yeast Co-Expression Networks after Genome Duplication [My Copy] PLoS Biol, Vol. 4, No. 4. (4 April 2006), e109. by Gavin C. Conant, Kenneth H. Wolfe posted to yeast redundancy network_evolution module_rewiring modularity genome_duplication gene_network gene_duplication gene_coexpression by biomcgary on 2009-11-12 19:13:00 as along with 3 people and 1 group dpollard nirfriedman bpcusack EisenLab
	Developmental Plasticity and Evolution [My Copy] (13 March 2003) by Mary J. West-Eberhard posted to textbook modularity genetics evolution evo-devo development behavior_genetics by awarlau on 2009-11-12 00:17:31 as along with 8 people and 6 groups Benja grzegorz balicea larios mattjb suizan kaniko maburkitt Neuroscience STS ComplexAdaptiveSystems DSTO-CAS feminist_technoscience 8_01
	The road to modularity. [My Copy] Nature reviews. Genetics, Vol. 8, No. 12. (December 2007), pp. 921-931. by Günter P. Wagner, Mihaela Pavlicev, James M. Cheverud posted to modularity by pale0 on 2009-11-11 12:36:49 as along with 8 people bertelsen biomcgary rsantana zufar massivemayhem RobMills mingzhi frohike
	Spontaneous evolution of modularity and network motifs [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13773-13778. by Nadav Kashtan, Uri Alon posted to modularity evolution circuits by karthikraman on 2009-11-11 10:25:06 as along with 22 people and 7 groups roys rsantana vtraag anphony ocs saket mcphee marimo monod Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina carlk Modularity in evolutionary algorithms MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
	Modularisation of domain ontologies implemented in description logics and related formalisms including OWL [My Copy] In K-CAP '03: Proceedings of the 2nd international conference on Knowledge capture (2003), pp. 121-128. by Alan L. Rector posted to modularity modularisation by EleniMikro on 2009-11-11 01:43:20 as along with 3 people leechuck Scis0000002 dullhunk
	Interim Bayesian Nash equilibrium on universal type spaces for supermodular games☆ [My Copy] Journal of Economic Theory (16 July 2009) by Timothy Van Zandt posted to modularity game_theory by YoshiY on 2009-11-07 13:49:32 as
	Community Structure of the Physical Review Citation Network [My Copy] (3 Nov 2009) by P. Chen, S. Redner posted to module modularity community citation by marinari on 2009-11-05 12:10:06 as along with 3 people and 1 group jsaramak ethome RMT Complex Networks Research Group
	Advanced modularity-specialized label propagation algorithm for detecting communities in networks [My Copy] (12 Oct 2009) by Xin Liu, Tsuyoshi Murata posted to network modularity lpam label_propagation complex_networks community_structures clustering by mjb on 2009-11-02 09:25:09 as
	Hierarchical Organization of Modularity in Metabolic Networks [My Copy] Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555. by E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, A. L. Barabasi posted to modularity hierachy complex_network by ganden on 2009-10-28 15:30:10 as along with 23 people and 9 groups feshbach cn_honjyo haewoon Scis0000002 schwartzjmc zufar deanmalmgren diamantis shivaram alexg yish wnpx ddahlem neveaire bigbossman griota jeremymiller natstreet karfunkel Evangelia stefanoallesina ellakat iris_2001 Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab
	Biological robustness [My Copy] Nature Reviews Genetics, Vol. 5, No. 11. (01 November 2004), pp. 826-837. by Hiroaki Kitano posted to systems_biology robust redundancy modularity fragility evolution by jporternj on 2009-10-27 00:00:04 as along with 3 people and 1 group livingthingdan massivemayhem bootsy livingthing
	Finding community structure in networks using the eigenvectors of matrices [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 74, No. 3. (2006), 036104. by M. E. J. Newman posted to topology network motif modularity algorithm by tomhebbron on 2009-10-21 11:28:20 as along with 9 people and 1 group AaronMcDaid lawraga studentx vtraag muraken cgaugain bigbossman hannu Diego_Prada ThinkTank
	Resolution limit in community detection [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 1. (2 January 2007), pp. 36-41. by Santo Fortunato, Marc BarthÃ©lemy posted to modularity community by AaronMcDaid on 2009-10-19 00:43:09 as along with 16 people and 3 groups wjant pdlug compbio almadana conradlee zufar vtraag cgaugain pdelosri lfriedl yas muraken iris_2001 kubyaddi marcio orahcio kdl T_lab EPFL_SB_ITP_LBS
	Phylogenetic analysis of modularity in protein interaction networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (14 October 2009), 333. by Sinan Erten, Xin Li, Gurkan Bebek, Jing Li, Mehmet Koyutürk posted to proteininteraction phylogeny network modularity graph evolution comparison by barriot on 2009-10-15 06:39:34 as along with 7 people and 2 groups sillitoe biomcgary ppgardne grahamc zwang druvus phoenixzxl Orengo Group Journal Picks Journal picks
	Organization of the autoantibody repertoire in healthy newborns and adults revealed by system level informatics of antigen microarray data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 34. (25 August 2009), pp. 14484-14489. by Asaf Madi, Inbal Hecht, Sharron Bransburg-Zabary, et al.Yifat Merbl, Adi Pick, Merav Zucker-Toledano, Francisco J. Quintana, Alfred I. Tauber, Irun R. Cohen, Eshel Ben-Jacob posted to modularity microarray immunology clustering by marcio on 2009-10-15 03:24:38 as along with 3 people VGreiff pineapple tomhebbron
	The Modular Organization of Protein Interactions in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (2 October 2009), e1000523. by José M. Peregrín-Alvarez, Xuejian Xiong, Chong Su, John Parkinson posted to protein_complex protein-protein_interaction network_evolution module modularity e_coli by biomcgary on 2009-10-13 22:47:39 as along with 6 people and 2 groups venancio CorinYeats grahamc kiekyon poirel dswan Orengo Group Journal Picks Bioinformatics
	Monotone Comparative Statics [My Copy] Econometrica, Vol. 62, No. 1. (1994), pp. 157-180. by Paul Milgrom, Chris Shannon posted to optimization modularity mathematics by YoshiY on 2009-10-12 13:28:39 as along with 2 people toomash tkravitz
	A novel scoring approach for protein co-purification data reveals high interaction specificity. [My Copy] PLoS computational biology, Vol. 5, No. 9. (September 2009) by Xueping Yu, Joseph Ivanic, Anders Wallqvist, Jaques Reifman posted to protein_protein_interactions network_confidence modularity methods mass_spec by grahamc on 2009-10-11 15:50:35 as along with 2 people snow_dragon carlk
	Analysis of the structure of complex networks at different resolution levels [My Copy] (15 Jan 2008) by Alex Arenas, Alberto Fernandez, Sergio Gomez posted to networks modules moduledetection modularity clustering by carlk on 2009-10-09 22:16:05 as along with 4 people snow_dragon kubyaddi sato-ryu bruno
	The conservation and evolutionary modularity of metabolism [My Copy] Genome Biology, Vol. 10, No. 6. (12 June 2009), R63. by Jose P. Alvarez, Chris Sanford, John Parkinson posted to networks modularity metabolic evolution by carlk on 2009-10-03 00:42:43 as along with 9 people and 1 group venancio adampah bdessailly barriot biomcgary michaelbarton Winzer tomhebbron grahamc Orengo Group Journal Picks
	Structure discovery in PPI networks using pattern-based network decomposition [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1814-1821. by Philip Bachman, Ying Liu posted to networks modules moduledetection modularity model-based clustering by carlk on 2009-10-03 00:41:20 as along with 5 people colm ess30 apocapoc grahamc colmryan
	The modularity of pollination networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 50. (11 December 2007), pp. 19891-19896. by Jens M. Olesen, Jordi Bascompte, Yoko L. Dupont, Pedro Jordano posted to networks moduledetection modularity clustering by carlk on 2009-10-03 00:39:00 as along with 1 person kubyaddi
	Modulated modularity clustering as an exploratory tool for functional genomic inference. [My Copy] PLoS genetics, Vol. 5, No. 5. (8 May 2009), e1000479. by Eric A. Stone, Julien F. Ayroles posted to networks modularity clustering by carlk on 2009-10-03 00:38:02 as along with 4 people and 1 group rdiaz theodorejmorgan roys tmmurali Morgan Lab-KSU
	Modularity and community structure in networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 23. (6 June 2006), pp. 8577-8582. by M. E. J. Newman posted to social-networks networks modularity by gagliol on 2009-10-02 13:01:04 as along with 34 people and 4 groups Sergey_gerbek RayRa houniao007 spool jago thegoose tnhh daforerog pdlug senseable-urb tomhebbron dakelley rsantana orahcio vtraag dartar aqeel ChaTo jfr yas balicea ddahlem cmm fukken kubyaddi adriandefroment gcalda hannu marcio phreeza Diego_Prada carlk ellakat jjray complex networks T_lab FAB-lab ThinkTank
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to yeast topology proteome network modularity by tomhebbron on 2009-10-01 13:05:14 as along with 31 people and 10 groups aceol ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	From molecular to modular cell biology. [My Copy] Nature, Vol. 402, No. 6761 Suppl. (2 December 1999), pp. C47-C52. by L. H. Hartwell, J. J. Hopfield, S. Leibler, A. W. Murray posted to review module_rewiring module modularity evolutionary_constraint evolution by biomcgary on 2009-09-30 21:57:46 as along with 27 people and 8 groups antonkratz dagmar poirel bertelsen Scis0000002 daforerog jporternj chihchun_chen babakap AurelienMazurie rhem1224 balajis nuke2005 rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori carlk awooga tvdbulck vsausg dragonrez EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock
	The origins and evolution of functional modules: lessons from protein complexes. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 361, No. 1467. (29 March 2006), pp. 507-517. by Jose B. Pereira-Leal, Emmanuel D. Levy, Sarah A. Teichmann posted to robustness protein-protein_interaction network_evolution network module_rewiring module modularity essentiality by biomcgary on 2009-09-30 21:50:29 as along with 6 people saket agustinarce bicko choonpeng cjeans cmzmasek
	Spectral tripartitioning of networks [My Copy] (19 Aug 2009) by Thomas Richardson, Peter J. Mucha, Mason A. Porter posted to modularity community by AaronMcDaid on 2009-09-27 01:12:03 as along with 1 person vtraag
	Fast unfolding of communities in large networks [My Copy] (25 Jul 2008) by Vincent D. Blondel, Jean-Loup Guillaume, Renaud Lambiotte, Etienne Lefebvre posted to modularity community_detection by Kovanen on 2009-09-23 14:20:25 as along with 10 people and 1 group eustachediemert hrotsos mussi jsaramak AaronMcDaid madiator stephaneclinchant ldietz ganden elsantosneto Networked Systems Lab
	Modularity and community detection in bipartite networks. [My Copy] Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 76, No. 6 Pt 2. (December 2007) by Michael J. Barber posted to modularity community bipartite by AaronMcDaid on 2009-09-17 18:08:39 as
	Community detection in complex networks using extremal optimization [My Copy] Physical Review E, Vol. 72, No. 2. (24 Aug 2005), 027104. by Jordi Duch, Alex Arenas posted to modularity community algorithm by AaronMcDaid on 2009-09-17 18:01:51 as along with 4 people and 1 group jmenche librain rsantana vtraag LIBrain
	Post-Processing Hierarchical Community Structures: Quality Improvements and Multi-scale View [My Copy] (9 Aug 2006) by Pascal Pons posted to multiscale modularity community by AaronMcDaid on 2009-09-16 18:43:17 as
	Finding community structure in very large networks [My Copy] (30 Aug 2004) by Aaron Clauset, M. E. J. Newman, Cristopher Moore posted to modularity community algorithm by AaronMcDaid on 2009-09-16 17:44:01 as along with 38 people and 10 groups makrehchi jasonn Kovanen diamantis theshadowhost senseable-urb hubcite korakot cantupaz pdlug breyten momonga nkorf ldietz lfriedl skyebend kei_s bigbossman merazzle xpontus mattjb livingthingdan mmartin dbatorski azygmunt jiong jaspervoskuilen gaudan sparikh andreacapocci jmarcelino warner outlier marcio dpf apwesolowski ganden orahcio Philosophy_of_Information Blog_and_Wiki_Research kdl IS-Lab Semantic-Social-Networks ComplexAdaptiveSystems DSTO-CAS ilps livingthing AGH-IISG
	Modularity optimization in community detection of complex networks [My Copy] EPL (Europhysics Letters), Vol. 87, No. 3. (2009), 38002. by X. S. Zhang, R. S. Wang, Y. Wang, et al.J. Wang, Y. Qiu, L. Wang, L. Chen posted to optimization network modularity graphs by rsantana on 2009-09-16 15:16:20 as along with 1 person Bolozna
	On Finding Graph Clusterings with Maximum Modularity [My Copy] Graph-Theoretic Concepts in Computer Science (2007), pp. 121-132. by Ulrik Brandes, Daniel Delling, Marco Gaertler, et al.Robert Görke, Martin Hoefer, Zoran Nikoloski, Dorothea Wagner posted to modularity community by AaronMcDaid on 2009-09-16 13:31:58 as along with 2 people vtraag lawraga
	Line graphs, link partitions, and overlapping communities [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 1. (2009), 016105. by T. S. Evans, R. Lambiotte posted to overlapping modularity community by AaronMcDaid on 2009-09-16 12:31:01 as along with 2 people jsaramak Kovanen
	Protein sectors: evolutionary units of three-dimensional structure. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted to structure secondary_structure modularity by pablocarb on 2009-09-15 10:07:09 as along with 10 people and 1 group yyfwuhan cmzmasek dgront robfsouza pansapiens vvoorr biomcgary dayjm jwm jbhiatt Marcotte_Lab
	Automatic modularity conformance checking [My Copy] In ICSE '08: Proceedings of the 30th international conference on Software engineering (2008), pp. 411-420. by Sunny Huynh, Yuanfang Cai, Yuanyuan Song, Kevin Sullivan posted to modules modularity by buchgeher on 2009-09-09 13:38:19 as along with 1 person andreff
	Harnessing nature's toolbox: regulatory elements for synthetic biology [My Copy] Journal of The Royal Society Interface, Vol. 6, No. Suppl 4. (6 August 2009), pp. S535-S546. by Patrick M. Boyle, Pamela A. Silver posted to systems-biology synthetic-biology modularity by bertelsen on 2009-09-05 17:11:47 as along with 1 person druvus
	Community Structure in Directed Networks [My Copy] Physical Review Letters, Vol. 100, No. 11. (2008), 118703. by E. A. Leicht, M. E. J. Newman posted to modularity directed by adamgyenge on 2009-09-05 10:51:33 as along with 7 people Diego_Prada vtraag kubyaddi cgaugain cfelipesp Borelli orahcio
	Impacts of yeast metabolic network structure on enzyme evolution [My Copy] Genome Biology, Vol. 8, No. 8. (09 August 2007), 407. by Chenqi Lu, Ze Zhang, Lindsey Leach, M. J. Kearsey, Z. W. Luo posted to modularity metabolism abcmeth_article by cgaugain on 2009-09-02 15:42:50 as
	Using dependency model to support software architecture evolution [My Copy] Automated Software Engineering - Workshops, 2008. ASE Workshops 2008. 23rd IEEE/ACM International Conference on In Automated Software Engineering - Workshops, 2008. ASE Workshops 2008. 23rd IEEE/ACM International Conference on (2008), pp. 82-91. by H. P. Breivold, I. Crnkovic, R. Land, S. Larsson posted to modularity lattix dependency-analysis cbsd by buchgeher on 2009-09-01 08:19:45 as
	Towards reusable components with aspects: an empirical study on modularity and obliviousness [My Copy] In ICSE '08: Proceedings of the 30th international conference on Software engineering (2008), pp. 91-100. by Kevin Hoffman, Patrick Eugster posted to modularity aop _result_low _relevance_high _idea_medium 2008 by andreff on 2009-08-31 09:12:27 as along with 2 people khatchad jsj8444
	Reflections on the virtues of modularity: a case study in linux security modules [My Copy] Software: Practice and Experience, Vol. 9999, No. 9999. (2009), n/a. by Andrew Blaich, Douglas Thain, Aaron Striegel posted to security modularity lsm linux by ajholanda on 2009-08-27 12:27:22 as along with 1 person recluze

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network	110
evolution	88
networks	76
community	44
modules	37
cognition	33
algorithm	28
complexity	26
_relevance_high	25
community_detection	24
clustering	23
development	21
biology	20
probmod	18
composition	17
_idea_high	16
_result_medium	16
modeling	16
review	16
theory_of_mind	16
community-detection	15
simulation	15
complex	14
complex_network	14
architecture	13
metabolism	13
decomposition	12
modelling	12
robustness	12
yeast	12
_idea_medium	11
design	11
language	11
systems_biology	11
evolvability	10
interactions	10
network_evolution	10
systems-biology	10
_result_low	9
communities	9
information	9
information_diffusion	9
interaction-network	9
modular	9
module	9
psychology	9
software	9
weighted	9
aop	8
bipartite	8
community_analysis	8
gene-networks	8
gene-regulation	8
graphs	8
grn	8
network_structure	8
software-engineering	8
sysbio	8
adaptation	7
genericity	7
genome	7
graph	7
hiding	7
interoperability	7
learning	7
protein	7
protein-protein	7
synthetic-biology	7
systems	7
_relevance_medium	6
_result_high	6
analysis	6
betweenness	6
child	6
counterfactual	6
directed	6
dynamics	6
engineering	6
heterogeneity	6
hierarchy	6
metrics	6
models	6
pathways	6
product-platform	6
soc	6
theory	6
2006	5
2007	5
artificial	5
cluster	5
components	5
eni	5
fodor	5
igraph	5
metabolic	5
oop	5
social_networks	5
survey	5
topology	5
type-checking	5

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