Tag moduledetection [34 articles] Export

Recent papers classified by the tag moduledetection.

	Enumeration of condition-dependent dense modules in protein interaction networks [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 933-940. by Elisabeth Georgii, Sabine Dietmann, Takeaki Uno, Philipp Pagel, Koji Tsuda posted to networks modules moduledetection dense by carlk on 2009-10-24 00:04:56 as along with 5 people hryk eesruiz imina grahamc mhamada
	Growing functional modules from a seed protein via integration of protein interaction and gene expression data [My Copy] BMC Bioinformatics, Vol. 8 (23 October 2007), 408. by Ioannis A. Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to networks moduledetection complexes complex clustering by carlk on 2009-10-10 00:26:05 as along with 3 people dragonrez jfr iris_2001
	Analysis of the structure of complex networks at different resolution levels [My Copy] (15 Jan 2008) by Alex Arenas, Alberto Fernandez, Sergio Gomez posted to networks modules moduledetection modularity clustering by carlk on 2009-10-09 22:16:05 as along with 4 people snow_dragon kubyaddi sato-ryu bruno
	Structure discovery in PPI networks using pattern-based network decomposition [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1814-1821. by Philip Bachman, Ying Liu posted to networks modules moduledetection modularity model-based clustering by carlk on 2009-10-03 00:41:20 as along with 4 people ess30 apocapoc grahamc colmryan
	The modularity of pollination networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 50. (11 December 2007), pp. 19891-19896. by Jens M. Olesen, Jordi Bascompte, Yoko L. Dupont, Pedro Jordano posted to networks moduledetection modularity clustering by carlk on 2009-10-03 00:39:00 as along with 1 person kubyaddi
	NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by S. Brohée, K. Faust, G. Lima-Mendez, et al.O. Sand, R. Janky, G. Vanderstocken, Y. Deville, J. van Helden posted to clustering databases moduledetection networks by carlk on 2009-07-20 23:19:48 as along with 7 people ptrobajo natstreet druvus jfr bootsy Borelli guhjy
	Clustering by common friends finds locally significant proteins mediating modules [My Copy] Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1124-1131. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michalis Faloutsos, Michael Schroeder posted to clustering moduledetection networks by carlk on 2009-07-20 23:19:09 as along with 2 people saket zwang
	A structural approach for finding functional modules from large biological networks. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9, No. Suppl 9. (2008), S19. by M. Mete, F. Tang, X. Xu, N. Yuruk posted to moduledetection modules networks by carlk on 2009-07-20 23:14:01 as along with 2 people cgaugain kluck
	Defining and identifying communities in networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9. (2 March 2004), pp. 2658-2663. by Filippo Radicchi, Claudio Castellano, Federico Cecconi, Vittorio Loreto, Domenico Parisi posted to algorithms communities community-detection graphs moduledetection modules network network-analysis networks scale-free-networks social-network-analysis social-networks by christiand on 2009-05-08 14:25:12 as along with 19 people and 2 groups akavipat mussi almadana vtraag kremso kubyaddi fabianavernero haewoon castellano shivaram jfr yas merazzle gcalda ltabourier sparikh carlk tnhh Diego_Prada smc-infm T_lab
	Modular decomposition of protein-protein interaction networks. [My Copy] Genome Biol, Vol. 5, No. 8. (2004) by J. Gagneur, R. Krause, T. Bouwmeester, G. Casari posted to moduledetection modules networks by carlk on 2009-04-25 23:31:09 as along with 4 people schwartzjmc ezotenko AbnerCYH tmmurali
	CFinder: locating cliques and overlapping modules in biological networks [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 1021-1023. by Balazs Adamcsek, Gergely Palla, Illes J. Farkas, Imre Derenyi, Tamas Vicsek posted to complexes moduledetection modules networks by carlk on 2009-04-25 23:30:38 as along with 2 people lawraga ellakat
	Detection of functional modules from protein interaction networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 54, No. 1. (1 January 2004), pp. 49-57. by Jose B. Pereira-Leal, Anton J. Enright, Christos A. Ouzounis posted to complexes moduledetection modules networks by carlk on 2009-04-25 23:30:05 as along with 4 people saket ujh opheliav wnpx
	Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (26 April 2006), 7. by Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka posted to moduledetection modules networks overlapping by carlk on 2009-04-25 23:18:15 as along with 4 people and 1 group saket lfriedl chad_davis AbnerCYH kdl
	Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network [My Copy] Genome Biology, Vol. 5, No. 1. (2003) by Christine Brun, Francois Chevenet, David Martin, Jerome Wojcik, Alain Guenoche, Bernard Jacq posted to moduledetection modules by carlk on 2008-08-01 23:21:35 as along with 3 people gcalda jiny maralena
	Protein complex prediction via cost-based clustering [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3013-3020. by A. D. King, N. Przulj, I. Jurisica posted to moduledetection modules by carlk on 2008-08-01 21:41:43 as along with 7 people and 1 group adking80 jiny lfriedl maralena hryk cerca ethkim kdl
	Relating whole-genome expression data with protein-protein interactions. [My Copy] Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46. by R. Jansen, D. Greenbaum, M. Gerstein posted to bicriteria expression linkprediction moduledetection modules networks by carlk on 2008-06-26 22:01:37 as along with 10 people saket Robinder gurkanbebek gespim grahamc cjeans iris_2001 kintoki paolomarcatili nedwards
	Co-clustering of biological networks and gene expression data [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S145-154. by Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer posted to bicriteria clustering expression moduledetection modules networks by carlk on 2008-06-20 17:20:17 as along with 4 people poirel saket chad_davis srp33
	Topological structure analysis of the protein-protein interaction network in budding yeast [My Copy] Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450. by Dongbo Bu, Yi Zhao, Lun Cai, et al.Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen posted to algorithms functionprediction moduledetection modules tmpcite1 yeast by carlk on 2008-06-15 18:48:28 as along with 6 people and 1 group jmenche lfriedl cjeans iris_2001 minostro ellakat kdl
	The art of gene function prediction [My Copy] Nature Biotechnology, Vol. 24, No. 12. (2006), pp. 1474-1475. by T. M. Murali, Chang-Jiun Wu, Simon Kasif posted to functionprediction moduledetection modules networks tmpcite1 by carlk on 2008-06-15 17:50:54 as along with 2 people mitko j3xucite
	Functional cartography of complex metabolic networks [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900. by Roger Guimera, Luis A. Nunes Amaral posted to moduledetection modules networks tmpcite1 by carlk on 2008-06-15 17:34:02 as along with 23 people and 4 groups schwartzjmc tomt21 lawraga Scis0000002 vtraag cgaugain pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis alexg eweaver tny wnpx cjeans kdang RobMills Diego_Prada marcio streptomyces dbk-lab kdl Bioinformatics
	Consistent dissection of the protein interaction network by combining global and local metrics [My Copy] Genome Biology, Vol. 8, No. 12. (21 December 2007), R271. by Chunlin Wang, Chris Ding, Qiaofeng Yang, Stephen Holbrook posted to moduledetection modules network tmpcite1 by carlk on 2008-06-14 19:46:34 as along with 3 people grahamc cjeans barriot
	Functional modules by relating protein interaction networks and gene expression [My Copy] Nucl. Acids Res., Vol. 31, No. 21. (1 November 2003), pp. 6283-6289. by Sabine Tornow, H. W. Mewes posted to bicriteria moduledetection modules networks by carlk on 2008-06-12 21:32:17 as along with 4 people yaredo saket bertelsen jiny
	An Efficient Approach to Detect a Protein Community from a Seed [My Copy] Computational Intelligence in Bioinformatics and Computational Biology, 2005. CIBCB '05. Proceedings of the 2005 IEEE Symposium on (2005), pp. 1-7. by D. D. Wu, Xiaohua Hu posted to moduledetection modules networks steiner by carlk on 2008-06-12 18:33:58 as along with 1 person iris_2001
	Modular organization of cellular networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 3. (4 February 2003), pp. 1128-1133. by Alexander W. Rives, Timothy Galitski posted to moduledetection modules networks by carlk on 2008-06-12 18:19:23 as along with 9 people lawraga ycho0610 diamantis jiny karfunkel Evangelia stefanoallesina ellakat roys
	Development and implementation of an algorithm for detection of protein complexes in large interaction networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Md, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya posted to moduledetection modules networks by carlk on 2008-06-12 18:17:21 as along with 2 people jiny maralena
	An automated method for finding molecular complexes in large protein interaction networks. [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (13 January 2003) by G. D. Bader, C. W. Hogue posted to moduledetection modules networks by carlk on 2008-06-12 18:15:53 as along with 10 people and 2 groups zufar dswan waqaralikeble cswinburne jiny dragonrez lfriedl nirfriedman massivemayhem ethkim Bioinformatics kdl
	An information-theoretic framework for resolving community structure in complex networks [My Copy] PNAS, Vol. 104, No. 18. (1 May 2007), pp. 7327-7331. by Martin Rosvall, Carl T. Bergstrom posted to moduledetection modules networks by carlk on 2008-06-12 16:58:36 as along with 8 people vtraag cgaugain Kovanen dakelley saket paultr AbnerCYH marcio
	Finding and evaluating community structure in networks [My Copy] Physical Review E, Vol. 69, No. 2. (Feb 2004), 026113. by M. E. J. Newman, M. Girvan posted to moduledetection modules networks by carlk on 2008-05-29 21:25:28 as along with 18 people and 1 group almadana lawraga senseable-urb diamantis rsantana panisson vtraag jyew muraken cgaugain davidecellai lshaw gcalda RobMills hannu Diego_Prada ilkert ddahlem ThinkTank
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted to functionprediction integration moduledetection modules networks by carlk on 2008-05-23 18:13:26 as along with 18 people greg akshayk ptrobajo yaredo isimpson qluo aheilbut zufar roys frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat
	Protein complexes and functional modules in molecular networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128. by Victor Spirin, Leonid A. Mirny posted to moduledetection modules networks by carlk on 2008-05-23 17:43:11 as along with 15 people and 4 groups lawraga ycho0610 diamantis jiny camster kentsis ujh tmmurali dragonrez karfunkel joseph_x_zhou Evangelia grahamc biehl ellakat dbk-lab biophysics HIV_DR bioNetwork_sysBio
	Evidence for dynamically organized modularity in the yeast protein-protein interaction network. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 88-93. by Jing-Dong D. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted to moduledetection networks protein yeast by carlk on 2008-05-23 17:42:09 as along with 29 people and 2 groups colmryan mgomes saket lawraga diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek kdl GeneGo
	Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9. (2 March 2004), pp. 2981-2986. by Amos Tanay, Roded Sharan, Martin Kupiec, Ron Shamir posted to integration moduledetection networks by carlk on 2008-05-20 21:12:57 as along with 7 people and 1 group roys snuppepuppan dragonrez lfriedl balajis natstreet ellakat kdl
	Information-theoretic approach to network modularity [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 71, No. 4. (2005) by Etay Ziv, Manuel Middendorf, Chris H. Wiggins posted to moduledetection modules by carlk on 2008-05-20 20:32:42 as along with 1 person jwhitney
	Evaluation of clustering algorithms for protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 7 (06 November 2006), 488. by Sylvain Brohee, Jacques van Helden posted to moduledetection modules networks tmpcite1 by carlk on 2008-05-20 20:30:48 as along with 16 people and 1 group kaarsinogen pdelosri jfr chad_davis balajis nirfriedman dquest grahamc cjeans hpaces Pao-Yang oktie Borelli AbnerCYH cerca ethkim EPFL_SB_ITP_LBS

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networks	55
modules	52
clustering	12
tmpcite1	7
functionprediction	6
algorithms	5
bicriteria	5
complexes	5
modularity	5
expression	4
integration	4
yeast	4
network	3
databases	2
linkprediction	2
model-based	2
protein	2
steiner	2
communities	1
community-detection	1
complex	1
dense	1
graphs	1
network-analysis	1
overlapping	1
scale-free-networks	1
seeded-complex-detection	1
social-network-analysis	1
social-networks	1
wabi09	1

Tag moduledetection [34 articles] Export

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