Tag modules [at least 200 articles] Export

Recent papers classified by the tag modules.

	Inferring transcriptional modules from ChIP-chip, motif and microarray data. [My Copy] Genome biology, Vol. 7, No. 5. (2006) by Karen Lemmens, Thomas Dhollander, Tijl De Bie, et al.Pieter Monsieurs, Kristof Engelen, Bart Smets, Joris Winderickx, Bart De Moor, Kathleen Marchal posted to tfbs modules module_nw by roys on 2009-11-17 06:58:37 as along with 4 people bozdagd alokm jfr kristallreiner
	Higher Order Functions Considered Unnecessary for Higher Order Programming [My Copy] Research Topics in Functional Programming (1990), pp. 309-351. by Joseph A. Goguen edited by David A. Turner posted to parametrized-modules obj modules higher-order-functions functional-programming defunctionalization by spl on 2009-11-15 09:46:07 as
	Allegro: Analyzing expression and sequence in concert to discover regulatory programs [My Copy] Nucl. Acids Res., Vol. 37, No. 5. (1 April 2009), pp. 1566-1579. by Yonit Halperin, Chaim Linhart, Igor Ulitsky, Ron Shamir posted to tfprograms tfnets motif_discovery modules by roys on 2009-11-12 23:15:41 as along with 3 people akshayk rdiaz nuin
	Modular control of human walking: Adaptations to altered mechanical demands. [My Copy] J Biomech (29 October 2009) by Craig P. McGowan, Richard R. Neptune, David J. Clark, Steven A. Kautz posted to walking modules fds by ALHALL20 on 2009-11-09 16:25:56 as
	A genomic strategy to elucidate modules of oncogenic pathway signaling networks. [My Copy] Molecular cell, Vol. 34, No. 1. (10 April 2009), pp. 104-114. by Jeffrey T. Chang, Carlos Carvalho, Seiichi Mori, et al.Andrea H. Bild, Michael L. Gatza, Quanli Wang, Joseph E. Lucas, Anil Potti, Phillip G. Febbo, Mike West, Joseph R. Nevins posted to pathway_analysis network modules gene_lists by jfr on 2009-11-02 15:54:31 as along with 8 people and 1 group bertelsen jmstat guhjy mspivako renatomilani fenghezi shikin roys Journal picks
	Rings, Modules and Linear Algebra [My Copy] (01 September 1970) by B. Hartley, T. O. Hawkes posted to rings modules linear_algebra by NitinCR on 2009-10-29 21:25:30 as along with 1 person Hamsterbacke
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to networks modules functional composite biological by dolchan on 2009-10-29 17:19:54 as along with 7 people jfr diamantis imina saket renatomilani lptolik jonesn
	Enumeration of condition-dependent dense modules in protein interaction networks [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 933-940. by Elisabeth Georgii, Sabine Dietmann, Takeaki Uno, Philipp Pagel, Koji Tsuda posted to networks modules moduledetection dense by carlk on 2009-10-24 00:04:56 as along with 5 people hryk eesruiz imina grahamc mhamada
	Dualizing Complexes and Perverse Modules over Differential Algebras [My Copy] (14 Jul 2004) by Amnon Yekutieli, James J. Zhang posted to perverse over modules dualizing differential complexes and algebras by umesh on 2009-10-18 18:39:20 as
	Between "design" and "bricolage": genetic networks, levels of selection, and adaptive evolution. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104 Suppl 1 (15 May 2007), pp. 8590-8596. by Adam S. Wilkins posted to modules levelofselection evolution adaptiveevolution by Garamonfok on 2009-10-13 10:15:08 as
	Analysis of the structure of complex networks at different resolution levels [My Copy] (15 Jan 2008) by Alex Arenas, Alberto Fernandez, Sergio Gomez posted to networks modules moduledetection modularity clustering by carlk on 2009-10-09 22:16:05 as along with 4 people snow_dragon kubyaddi sato-ryu bruno
	Modular Object-Oriented Programming with Units and Mixins [My Copy] In Proceedings of the ACM SIGPLAN International Conference on Functional Programming (ICFP '98), Vol. 34(1) (1999), pp. 94-104. by Robert B. Findler, Matthew Flatt posted to modules by samth on 2009-10-09 20:17:11 as along with 6 people and 1 group dherman JacquesC JeffreyPalmer zednenem ryanc brothers NU-PRL
	Are Protein Domains Modules of Lateral Genetic Transfer? [My Copy] PLoS ONE, Vol. 4, No. 2. (20 February 2009), e4524. by Cheong X. Chan, Aaron E. Darling, Robert G. Beiko, Mark A. Ragan posted to proteome modules domain by druvus on 2009-10-06 15:35:51 as along with 3 people chancx AaronDarling zwang
	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted to transcription signatures processes networks multi-scale molecular modules modular models microarray mechanistic gene-regulation disease comparative cancer by bertelsen on 2009-10-05 15:56:21 as along with 13 people and 1 group chasmand roys lwaldron cswinburne aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin srp33 GeneGo
	How and when should interactome-derived clusters be used to predict functional modules and protein function? [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3143-3150. by Jimin Song, Mona Singh posted to survey networks modules functional_modules function_prediction clusterings by saket on 2009-10-03 07:37:28 as along with 4 people TRHvidsten grahamc jsuchit carlk
	Structure discovery in PPI networks using pattern-based network decomposition [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1814-1821. by Philip Bachman, Ying Liu posted to networks modules moduledetection modularity model-based clustering by carlk on 2009-10-03 00:41:20 as along with 5 people colm ess30 apocapoc grahamc colmryan
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted to networks modules high-throughput functional data by greg on 2009-09-27 23:52:49 as along with 18 people akshayk ptrobajo yaredo isimpson qluo aheilbut zufar roys frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat carlk
	The human disease network [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-LÃ¡szlÃ³ BarabÃ¡si posted to network modules human disease associations by bertelsen on 2009-09-20 23:07:04 as along with 39 people and 9 groups robfsouza smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest daforerog nedwards Dulcinea saket kaarsinogen roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shoshin shikin nolodie mingzhi carlk yaredo Network Analysis of Genes Regulated in Renal Diseases Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper GomezLab
	An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by Min Xu, Ming-Chih C. Kao, Juan Nunez-Iglesias, Joseph R. Nevins, Mike West, Xianghong Jasmine J. Zhou posted to topological phenotype pathways network modules microarray methodology integrative integration information functional-genomics disease data-integration cancer by bertelsen on 2009-09-15 20:56:41 as along with 4 people guhjy Zephyrus cswinburne jfr
	A module map showing conditional activity of expression modules in cancer. [My Copy] Nature genetics, Vol. 36, No. 10. (October 2004), pp. 1090-1098. by Eran Segal, Nir Friedman, Daphne Koller, Aviv Regev posted to tumors therapeutic prognostic modules microarray integration gene-expression diagnostic cancer by bertelsen on 2009-09-15 20:51:43 as along with 7 people and 1 group ipark-kaist saman_vp lwaldron jimineep ladygoat balajis nirfriedman CGREL
	Yetter-Drinfeld modules under cocycle twists [My Copy] (10 Sep 2009) by Georgia Benkart, Mariana Pereira, Sarah Witherspoon posted to yetter-drinfeld modules by clomp on 2009-09-11 10:01:43 as
	Automatic modularity conformance checking [My Copy] In ICSE '08: Proceedings of the 30th international conference on Software engineering (2008), pp. 411-420. by Sunny Huynh, Yuanfang Cai, Yuanyuan Song, Kevin Sullivan posted to modules modularity by buchgeher on 2009-09-09 13:38:19 as along with 1 person andreff
	Strategies for the physiome project. [My Copy] Annals of biomedical engineering, Vol. 28, No. 8. (August 2000), pp. 1043-1058. by J. B. Bassingthwaighte posted to virtual_human systems-biology review quantitative physiology pathology networks multi-scale modules model human database complexity biochemical by bertelsen on 2009-09-04 21:00:17 as
	Modularity and interactions in the genetics of gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6441-6446. by Oren Litvin, Helen C. Causton, Bo-Juen Chen, Dana Pe'er posted to modules microarray_data iqtl eqtl biclustering by frohike on 2009-08-26 08:51:08 as along with 13 people zufar guhjy dipenps coela Scis0000002 alweber daforerog TRHvidsten trfield deanmalmgren shikin provero roys
	The origins and evolution of functional modules: lessons from protein complexes. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 361, No. 1467. (29 March 2006), pp. 507-517. by Jose B. Pereira-Leal, Emmanuel D. Levy, Sarah A. Teichmann posted to modules evolution duplication complexes by saket on 2009-08-24 18:14:55 as along with 6 people biomcgary agustinarce bicko choonpeng cjeans cmzmasek
	Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. [My Copy] BMC genomics, Vol. 10, No. 1. (11 August 2009), 373. by Xinxia Peng, Yu Li, Kathie-Anne A. Walters, et al.Elizabeth R. Rosenzweig, Sharon L. Lederer, Lauri D. Aicher, Sean Proll, Michael G. Katze posted to for:heliopais modules mirna_target_prediction mirna microarray_data_analysis liver hepatitis by frohike on 2009-08-14 14:37:00 as along with 4 people and 1 group ptrobajo heliopais guhjy danmaclean microRNA
	Evolution and dynamics of protein interactions and networks [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 349-357. by E. Levy, J. Pereiraleal posted to evolution modules networks time_machine by saket on 2009-08-04 22:08:23 as along with 8 people chica carlk paolomarcatili guhjy neils cabbagesofdoom marck zdai
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted to compression modules networks summarize by saket on 2009-08-04 22:02:47 as along with 24 people and 2 groups colmryan carlk diamantis yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk rsantana Mycology OPIG
	A complex-centric view of protein network evolution. [My Copy] Nucleic acids research, Vol. 37, No. 12. (1 July 2009), e88. by Nir Yosef, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to complexes evolution modules time_machine by saket on 2009-08-04 20:44:21 as along with 11 people and 1 group carlk chica dakelley tomhebbron davidalee leemond31 druvus kiekyon neils tmmurali grahamc Orengo Group Journal Picks
	Modular control of human walking: a simulation study. [My Copy] J Biomech, Vol. 42, No. 9. (19 June 2009), pp. 1282-1287. by R. R. Neptune, D. J. Clark, S. A. Kautz posted to modules walking by ALHALL20 on 2009-07-29 16:22:23 as
	Parts and Theories in Compositional Biology [My Copy] Biology and Philosophy, Vol. 21, No. 4. (September 2006), pp. 471-499. by Rasmus G. Winther posted to composability compositional-biology compositionality formal-biology modules by Scis0000002 on 2009-07-26 21:26:39 as
	Deciphering the connectivity structure of biological networks using MixNet [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 6. (2009), S17. by Franck Picard, Vincent Miele, Jean J. Daudin, Ludovic Cottret, Stephane Robin posted to inter_modules model_based modules by saket on 2009-07-23 15:15:56 as along with 1 person and 1 group sillitoe Orengo Group Journal Picks
	Community detection in graphs [My Copy] (3 Jun 2009) by Santo Fortunato posted to clusterings hierarchical model_based modularity modules survey by saket on 2009-07-21 21:35:33 as along with 15 people mjb ecome AaronMcDaid pdlug dpf Bolozna lawraga Kovanen marinari Diego_Prada juhop janpaniev acrmartins aheilbut deanmalmgren
	Computing communities in large networks using random walks (long version) [My Copy] (12 Dec 2005) by Pascal Pons, Matthieu Latapy posted to clusterings modules random_walks by saket on 2009-07-21 21:27:53 as along with 3 people cgaugain ansobol ltabourier
	A structural approach for finding functional modules from large biological networks. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9, No. Suppl 9. (2008), S19. by M. Mete, F. Tang, X. Xu, N. Yuruk posted to moduledetection modules networks by carlk on 2009-07-20 23:14:01 as along with 2 people cgaugain kluck
	Modularity and community structure in networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 23. (6 June 2006), pp. 8577-8582. by M. E. J. Newman posted to communities components modularity modules networks by Scis0000002 on 2009-07-18 21:34:01 as along with 18 people mussi stephaneclinchant theshadowhost compbio aanthon2 lfriedl skyebend fukken bigbossman kubyaddi griota iris_2001 salvoscellato orahcio ChaTo apwesolowski dpf jmchauvet
	Detection of functional modules from protein interaction networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 54, No. 1. (1 January 2004), pp. 49-57. by Jose B. Pereira-Leal, Anton J. Enright, Christos A. Ouzounis posted to modules networks by saket on 2009-07-15 22:38:03 as along with 4 people carlk ujh opheliav wnpx
	Using diversity in cluster ensembles [My Copy] Systems, Man and Cybernetics, 2004 IEEE International Conference on In Systems, Man and Cybernetics, 2004 IEEE International Conference on, Vol. 2 (2004), pp. 1214-1219 vol.2. by L. I. Kuncheva, S. T. Hadjitodorov posted to module_ensembles modules by saket on 2009-07-13 00:00:41 as
	Automatic Identification of Informative Sections of Web Pages [My Copy] IEEE Transactions on Knowledge and Data Engineering, Vol. 17, No. 9. (September 2005), pp. 1233-1246. by Sandip Debnath, Prasenjit Mitra, Nirmal Pal, Lee C. Giles posted to contexts information-extracting modules segmenting segments sentences by Scis0000002 on 2009-07-09 17:11:32 as along with 2 people pos RobotAdam
	A Resilient, Low-Frequency, Small-World Human Brain Functional Network with Highly Connected Association Cortical Hubs [My Copy] J. Neurosci., Vol. 26, No. 1. (4 January 2006), pp. 63-72. by Sophie Achard, Raymond Salvador, Brandon Whitcher, John Suckling, Ed Bullmore posted to brains modularity module-morphism modules network-analysis neurodynamics neuronal-structures resilience small-world-network small-world-networks by Scis0000002 on 2009-07-09 15:38:37 as along with 12 people and 4 groups dawnsong jclau prerona yonghe knuu alexr xlli pbellec pervane xinian josepe suizan Complex_Brain_Networks Functional_Imaging Autoregulation resting-state_networks
	A map of the interactome network of the metazoan C. elegans. [My Copy] Science (New York, N.Y.), Vol. 303, No. 5657. (23 January 2004), pp. 540-543. by S. Li, C. M. Armstrong, N. Bertin, et al.H. Ge, S. Milstein, M. Boxem, P. O. Vidalain, J. D. Han, A. Chesneau, T. Hao, D. S. Goldberg, N. Li, M. Martinez, J. F. Rual, P. Lamesch, L. Xu, M. Tewari, S. L. Wong, L. V. Zhang, G. F. Berriz, L. Jacotot, P. Vaglio, J. Reboul, T. Hirozane-Kishikawa, Q. Li, H. W. Gabel, A. Elewa, B. Baumgartner, D. J. Rose, H. Yu, S. Bosak, R. Sequerra, A. Fraser, S. E. Mango, W. M. Saxton, S. Strome, S. Van Den Heuvel, F. Piano, J. Vandenhaute, C. Sardet, M. Gerstein, L. Doucette-Stamm, K. C. Gunsalus, J. W. Harper, M. E. Cusick, F. P. Roth, D. E. Hill, M. Vidal posted to connectivity interaction-graphs interaction-networks interactions interactivity interactome interactomes interactomics interconnectivity interoperability modules protein-protein-interactions proteomic-spaces symmetries by Scis0000002 on 2009-07-09 13:02:44 as along with 14 people and 2 groups mgomes lawraga thegoose2 semin cerca tharris shivaram lfriedl nuke2005 lyongu sesejun Chue carlk ksiek C. elegans / WormBase kdl
	Network legos: building blocks of cellular wiring diagrams. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 7. (September 2008), pp. 829-844. by T. M. Murali, C. G. Rivera posted to disease gene-expression integrating large-scale methodology modules network software top-down by bertelsen on 2009-07-08 23:24:26 as along with 7 people druvus guhjy jfr sjcockell tmmurali lptolik RamuAnandakrishnan
	On the interaction of selective attention and lexical knowledge: A connectionist account of neglect dyslexia [My Copy] J. Cognitive Neuroscience, Vol. 2, No. 2. (1990), pp. 96-123. by Michael C. Mozer, Marlene Behrmann posted to attention brain_injury comps connectionism dyslexia models modules neglect by kapfelba on 2009-06-30 16:06:56 as
	SLAM: a connectionist model for attention in visual selection tasks. [My Copy] Cognitive psychology, Vol. 22, No. 3. (July 1990), pp. 273-341. by R. H. Phaf, A. H. Van der Heijden, P. T. Hudson posted to attention biased_competition competition comps connectionism feedback models modules selection stroop_effect vision by kapfelba on 2009-06-24 19:39:02 as along with 1 person sylvain_chevallier
	Calculating modules in contextual logic program refinement [My Copy] Theory Pract. Log. Program., Vol. 8, No. 1. (2008), pp. 1-31. by Robert Colvin, Ian, Paul Strooper posted to modules by Scis0000002 on 2009-06-21 08:33:54 as
	Bayesian Nonlinear Principal Component Analysis Using Random Fields [My Copy] Pattern Analysis and Machine Intelligence, IEEE Transactions on In Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. 31, No. 4. (2009), pp. 749-754. by Heng Lian posted to bayesian components modules nonlinearity pca priors random-fields by Scis0000002 on 2009-06-17 19:57:33 as along with 3 people matjes singhsh xtizon
	Tannakian Categories [My Copy] Hodge Cycles, Motives, and Shimura Varieties (1981), pp. 101-228. by P. Deligne, J. Milne posted to category_theory modules by christiankissig on 2009-06-15 13:01:56 as
	Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1874-1880. by H. Li, M. Zhan posted to analysis integrative microarray modules regulation transcription-factor by bertelsen on 2009-06-13 11:59:37 as along with 5 people TRHvidsten guhjy jfr icecrown ealloza
	The discovery of transcriptional modules by a two-stage matrix decomposition approach [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 473-479. by Li, Huai, Sun, Yu, Zhan, Ming posted to gene-expression matrix-factorization microarray modules nonlinear sparse transcription by bertelsen on 2009-06-13 09:43:41 as
	Groups of Diverse Problem Solvers Can Outperform Groups of High-Ability Problem Solvers [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 46. (2004), pp. 16385-16389. by Lu Hong, Scott E. Page, William J. Baumol posted to abilities adaptivity collaborating crowdsourcing democratic-technologies diversity experts intelligent-societies knowledge-processors modules populations-of-strategies portfolios problem-solvers problem-solving societies survivability by Scis0000002 on 2009-06-11 20:43:10 as along with 1 person and 1 group voiklis ColDyn

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networks	124
moduledetection	52
modularity	37
scheme	28
evolution	26
network	25
microarray	18
expression	15
ml	15
algorithms	13
complexes	13
clusterings	12
functionprediction	12
yeast	12
category_theory	11
clustering	11
regulatory	11
plt	10
mixins	9
models	9
disease	8
functional	8
gene-expression	8
phenotype	8
review	8
tmpcite1	8
cancer	7
communities	7
function_prediction	7
haskell	7
macros	7
protein	7
regulation	7
transcription	7
components	6
functional-genomics	6
information	6
integration	6
java	6
signatures	6
software	6
types	6
bicriteria	5
decomposition	5
design	5
network-analysis	5
pathway	5
biochemical	4
cis-regulatory	4
comparative	4
complex	4
dynamics	4
gene-regulation	4
gene_ontology	4
hiding	4
integrative	4
interactivity	4
methodology	4
mirna	4
model_based	4
modular	4
multi-scale	4
oopsla-paper	4
pathways	4
semantics	4
survey	4
systems-biology	4
time_machine	4
units	4
analysis	3
caner	3
comps	3
connectionism	3
extensibility	3
feedback	3
function	3
gene	3
gene_expression	3
hierarchical	3
interactions	3
interconnectivity	3
large-scale	3
linguistic-frameworks	3
mechanistic	3
module-morphism	3
molecular	3
network-equations	3
oncogenesis	3
pathway-analysis	3
populations-of-strategies	3
prediction	3
processes	3
random_walks	3
reconstruction	3
sem_models	3
separate-compilation	3
signal	3
standard-ml	3
synthetic-biology	3
tom	3

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