Tag molecular_mechanics [13 articles] Export

Recent papers classified by the tag molecular_mechanics.

	Molecular mechanics methods for predicting protein-ligand binding. [My Copy] Physical chemistry chemical physics : PCCP, Vol. 8, No. 44. (28 November 2006), pp. 5166-5177. by Niu Huang, Chakrapani Kalyanaraman, Katarzyna Bernacki, Matthew P. Jacobson posted to ligand-protein-binding molecular_mechanics by apaydin on 2009-08-05 07:26:14 as along with 4 people anuragsethi mijogiffin ucbcjbm superpyrin
	SHARPEN-Systematic Hierarchical Algorithms for Rotamers and Proteins on an Extended Network. [My Copy] Journal of computational chemistry (23 January 2009) by Ilya V V. Loksha, James R R. Maiolo, Cheng W W. Hong, Albert Ng, Christopher D D. Snow posted to molecular_mechanics opensource software by apaydin on 2009-06-07 06:50:00 as along with 3 people and 3 groups sobolevnrm A_Coletta_Thesis barry baker-group Structural Biology Group TorVergata structural_bioinformatics
	Insights into Protein–DNA Interactions through Structure Network Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000170. by R. Sathyapriya, M. S. Vijayabaskar, Saraswathi Vishveshwara posted to molecular_mechanics physics protein_dna protein_structure by hmk on 2008-09-05 16:28:42 as along with 9 people and 1 group TRHvidsten svozil Zephyrus Ema emptyhb aalibes AbnerCYH Totobox zwang Roswell Cancer Crosstalk
	A simple physical model for binding energy hot spots in proteinâprotein complexes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121. by Tanja Kortemme, David Baker posted to alternatives data free_energy molecular_mechanics protein_protein_interactions by hmk on 2008-06-01 00:24:36 as along with 8 people and 1 group chemrahul82 onufriev oceanwind lna jwm bicko cjeans skoddet Nielsen group
	On Design of Optimal Nonlinear Kernel Potential Function for Protein Folding and Protein Design [My Copy] by Changyu Hu, Xiang Li, Jie Liang posted to data decoy decoy_detection molecular_mechanics protein_design protein_structure by hmk on 2008-01-06 00:26:29 as
	Computational design of protein-protein interactions. [My Copy] Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 91-97. by Tanja Kortemme, David Baker posted to alternatives data molecular_mechanics physics protein_protein_interactions by hmk on 2007-12-12 15:44:14 as along with 7 people bmduggan qluo lna jwm bicko cjeans jteyra
	Information Theory and Statistical Mechanics [My Copy] Physical Review Online Archive (Prola), Vol. 106, No. 4. (15 May 1957), pp. 620-630. by E. T. Jaynes posted to inference information_theory molecular_mechanics statistics by hmk on 2007-12-07 06:41:06 as along with 12 people thyk tictacgo vtraag Gorzomagnificent gokopal GomezAddams christoph_study ddahlem nathanielvirgo jenda_z varung dcoates
	Toward high-resolution prediction and design of transmembrane helical protein structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15682-15687. by P. Barth, J. Schonbrun, D. Baker posted to data decoy_detection molecular_mechanics physics protein_structure by hmk on 2007-10-02 22:57:07 as along with 3 people zwang biehl Ema
	An Orientation-dependent Hydrogen Bonding Potential Improves Prediction of Specificity and Structure for Proteins and Protein-Protein Complexes [My Copy] Journal of Molecular Biology, Vol. 326, No. 4. (28 February 2003), pp. 1239-1259. by Tanja Kortemme, Alexandre V. Morozov, David Baker posted to molecular_mechanics physics protein_structure side_chain_prediction by hmk on 2007-03-15 20:47:05 as along with 3 people krapnik Elena_Zubova mirzazadeh
	Design of a novel globular protein fold with atomic-level accuracy. [My Copy] Science (New York, N.Y.), Vol. 302, No. 5649. (21 November 2003), pp. 1364-1368. by Brian Kuhlman, Gautam Dantas, Gregory C. Ireton, Gabriele Varani, Barry L. Stoddard, David Baker posted to graphical_models molecular_mechanics physics protein_design protein_structure by hmk on 2007-03-14 01:23:38 as along with 10 people bmduggan kgutwin Diego_Prada onufriev apaydin dfgreen jwm heymiki kevinchannon ca3295
	Effective energy function for proteins in solution. [My Copy] Proteins, Vol. 35, No. 2. (1 May 1999), pp. 133-152. by T. Lazaridis, M. Karplus posted to molecular_mechanics physics protein_structure by hmk on 2007-03-13 18:18:43 as along with 6 people and 2 groups melo_mcr oceanwind marcius bluvsh1 choonpeng kgutwin BioinfoCIPF SGU-CIPF
	Modeling structurally variable regions in homologous proteins with rosetta. [My Copy] Proteins, Vol. 55, No. 3. (15 May 2004), pp. 656-677. by C. A. Rohl, C. E. Strauss, D. Chivian, D. Baker posted to protein_structure molecular_mechanics by hmk on 2007-02-08 23:25:10 as along with 4 people and 1 group jwm vavi yongzhao thamelry TSRI_MGL
	Force fields for protein simulations. [My Copy] Adv Protein Chem, Vol. 66 (2003), pp. 27-85. by J. W. Ponder, D. A. Case posted to protein_structure molecular_mechanics by hmk on 2007-02-08 22:26:46 as along with 4 people and 2 groups pavanghatty karbak marcius papatonyhill BioinfoCIPF SGU-CIPF

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protein_structure	10
data	7
physics	7
alternatives	4
protein_protein_interactions	4
decoy_detection	3
protein_design	3
decoy	2
free_energy	2
graphical_models	2
molecular_dynamics	2
backbone	1
binding	1
inference	1
information_theory	1
library	1
ligand-protein-binding	1
opensource	1
protein_dna	1
protein_folding	1
side_chain_prediction	1
software	1
statistics	1

Tag molecular_mechanics [13 articles] Export

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