Tag mrna [at least 200 articles] Export

Recent papers classified by the tag mrna.

	The role of mRNA structure in translational control in bacteria. [My Copy] RNA biology, Vol. 6, No. 2. (n 2009), pp. 153-160. by Thomas Geissmann, Stefano Marzi, Pascale Romby posted to translation mrna gene_expression control by Vincent_Rouilly on 2009-11-05 08:02:39 as
	GMAP: a genomic mapping and alignment program for mRNA and EST sequences [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1859-1875. by Thomas D. Wu, Colin K. Watanabe posted to mrna mpss alignment by maren on 2009-10-29 21:33:58 as along with 5 people bozdagd natstreet druvus olympos yoanjacquemin
	Co-variation of tRNA Abundance and Codon Usage inEscherichia coliat Different Growth Rates [My Copy] Journal of Molecular Biology, Vol. 260, No. 5. (2 August 1996), pp. 649-663. by H. Dong posted to usage trna mrna ecoli concentration codon by saunders on 2009-10-27 15:13:25 as
	The XIAP IRES activates 3â² cistron expression by inducing production of monocistronic mRNA in the Î²gal/CAT bicistronic reporter system [My Copy] RNA, Vol. 15, No. 11. (November 2009), pp. 1980-1985. by Holly A. Saffran, James R. Smiley posted to x_chromosome promoter_activity mrna ires by ppgardne to the group Journal picks on 2009-10-16 09:02:07 as
	14-3-3 protein binds to the low molecular weight neurofilament (NFL) mRNA 3' UTR. [My Copy] Molecular and cellular neurosciences, Vol. 34, No. 1. (January 2007), pp. 80-87. by Wei-Wen W. Ge, Kathryn Volkening, Cheryl Leystra-Lantz, Howard Jaffe, Michael J. Strong posted to neurofilaments mrna 14-3-3 by nns1987 on 2009-10-14 09:22:19 as
	Introns Regulate the Rate of Unstable mRNA Decay [My Copy] Journal of Biological Chemistry, Vol. 282, No. 28. (13 July 2007), pp. 20230-20237. by Chenyang Zhao, Thomas Hamilton posted to mrna degradation by hcoller on 2009-10-14 03:46:55 as
	Quantifying mRNA synthesis and decay rates using small RNAs [My Copy] (11 Oct 2009) by Vlad Elgart, Tao Jia, Rahul Kulkarni posted to stochastic rate mrna mathematical_model by jjray on 2009-10-13 16:38:07 as
	P bodies: at the crossroads of post-transcriptional pathways [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 1. (01 January 2007), pp. 9-22. by Ana Eulalio, Isabelle Behm-Ansmant, Elisa Izaurralde posted to review regulation post-transcriptional pathways p-bodies mrna localization gene-expression cytoplasmic cell-biology by bertelsen on 2009-10-07 23:24:55 as along with 3 people and 2 groups xico margaritis lzhonsailing Neuroscience WetBiology
	Stress-dependent relocalization of translationally primed mRNPs to cytoplasmic granules that are kinetically and spatially distinct from P-bodies. [My Copy] The Journal of cell biology, Vol. 179, No. 1. (8 October 2007), pp. 65-74. by Nathaniel P. Hoyle, Lydia M. Castelli, Susan G. Campbell, Leah E. Holmes, Mark P. Ashe posted to p-bodies mrna localization epg-bodies cytoplasmic cell-biology by bertelsen on 2009-10-07 23:21:14 as along with 1 person dbenn
	Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites. [My Copy] Science (New York, N.Y.), Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647. by Rickard Sandberg, Joel R. Neilson, Arup Sarma, Phillip A. Sharp, Christopher B. Burge posted to target t-cell proliferation mrna mirna lymphocytes expression cells 3-utr by bertelsen on 2009-10-07 22:50:10 as along with 14 people and 1 group danaiancu hcoller tonamswish ivanek valeriehilgers heliopais jfr dchughes djkt lisa1 bootsy emptyhb faion daforerog microRNA
	Aberrant regulation of messenger RNA 3'-untranslated region in human cancer. [My Copy] Cellular oncology : the official journal of the International Society for Cellular Oncology, Vol. 29, No. 1. (2007), pp. 1-17. by Isabel López de Silanes, María Paz P. Quesada, Manel Esteller posted to review regulation mrna human cancer 3-utr by bertelsen on 2009-10-07 22:17:09 as along with 1 person hcoller
	Chromatin poises miRNA- and protein-coding genes for expression. [My Copy] Genome research, Vol. 19, No. 10. (27 October 2009), pp. 1742-1751. by Artem Barski, Raja Jothi, Suresh Cuddapah, et al.Kairong Cui, Tae-Young Y. Roh, Dustin E. Schones, Keji Zhao posted to protein poises mrna mirna expression chromatin chip_seq chip by fpattyn to the group Neuroblastoma on 2009-10-02 00:25:19 as along with 8 people and 1 group heliopais samgj polivares megraw inesdesantiago djkt fenghezi idonaldson microRNA
	Conserved Expression Patterns Predict microRNA Targets [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (25 September 2009), e1000513. by William Ritchie, Megha Rajasekhar, Stephane Flamant, John E. J. Rasko posted to targets prediction pattern mrna microrna expression by ealloza on 2009-10-01 18:52:58 as along with 11 people and 1 group jperkins heliopais gdb samgj toni_marco neils ptrobajo al2na TRHvidsten djkt cisevol microRNA
	Reciprocal regulation of microRNA and mRNA profiles in neuronal development and synapse formation [My Copy] BMC Genomics, Vol. 10, No. 1. (8 September 2009), 419. by Sergei Manakov, Seth Grant, Anton Enright posted to mrna microrna gene expression dataset by akundaje on 2009-09-28 09:22:33 as along with 3 people and 2 groups heliopais daforerog danmaclean microRNA Gene Regulation
	Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 38. (22 September 2009), pp. 16399-16404. by Maria Valencia-Burton, Ankita Shah, Jason Sutin, et al.Azra Borogovac, Ron M. McCullough, Charles R. Cantor, Amit Meller, Natalia E. Broude posted to transcription spatial mrna kinetics gene_expression bacteria by jjray on 2009-09-27 16:59:03 as along with 1 person OliverHarriman
	Co-translational mRNA decay in Saccharomyces cerevisiae. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 225-229. by Wenqian Hu, Thomas J. Sweet, Sangpen Chamnongpol, Kristian E. Baker, Jeff Coller posted to ribosome protein_translation mrna_decay mrna gratuitous_reference by biomcgary on 2009-09-23 19:10:39 as along with 4 people and 1 group nzm jjray TRHvidsten bpcusack Journal picks
	mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer. [My Copy] Genome biology, Vol. 10, No. 9. (1 September 2009), R90. by Chao Cheng, Xuping Fu, Pedro Alves, Mark Gerstein posted to multimodal mrna microrna expression cancer breast by ptrobajo on 2009-09-21 14:07:55 as along with 4 people and 1 group tonamswish megraw Schmidtc heliopais microRNA
	Bayesian unsupervised learning with multiple data types. [My Copy] Statistical applications in genetics and molecular biology, Vol. 8, No. 1. (2009) by Phaedra Agius, Yiming Ying, Colin Campbell posted to microrna unsupervised mrna cross-species cross-platform bayesian by ptrobajo on 2009-09-12 21:17:26 as
	Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. [My Copy] BMC genomics, Vol. 10, No. 1. (11 August 2009), 373. by Xinxia Peng, Yu Li, Kathie-Anne A. Walters, et al.Elizabeth R. Rosenzweig, Sharon L. Lederer, Lauri D. Aicher, Sean Proll, Michael G. Katze posted to regulatory mrna module microrna by ptrobajo on 2009-09-11 21:04:53 as along with 4 people and 1 group heliopais guhjy frohike danmaclean microRNA
	MqsR, a crucial regulator for quorum sensing and biofilm formation, is a GCU-specific mRNA interferase in Escherichia coli. [My Copy] The Journal of biological chemistry (18 August 2009) by Yoshihiro Yamaguchi, Jung-Ho H. Park, Masayori Inouye posted to sensing regulator quorum mrna mqsr interferase escherichia coli biofilm by Winzer on 2009-09-09 10:59:17 as
	Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain. [My Copy] PLoS genetics, Vol. 5, No. 8. (21 August 2009), e1000617. by Jasmina Ponjavic, Peter L. Oliver, Gerton Lunter, Chris P. Ponting posted to ncrna mrna long-ncrna brain by sebastien_vigneau on 2009-09-09 00:14:37 as along with 3 people and 1 group djkt bpcusack ppgardne Journal picks
	Regulating the regulator: an RNA decoy acts as an OFF switch for the regulation of an sRNA. [My Copy] Genes & development, Vol. 23, No. 17. (1 September 2009), pp. 1981-1985. by Pierre Mandin, Susan Gottesman posted to titration srna small-regulatory-rna mrna by sebastien_vigneau on 2009-09-08 23:41:37 as
	The canary androgen receptor mRNA is localized in the song control nuclei of the brain and is rapidly regulated by testosterone [My Copy] Journal of Neurobiology, Vol. 26, No. 2. (1995), pp. 213-224. by Kent L. Nastiuk, David F. Clayton posted to songnucleus regulation receptor mrna brisong androgen by ppouso on 2009-09-03 01:24:38 as
	Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (1 May 2009), e60. by Vivek Jayaswal, Mark Lutherborrow, David D. F. Ma, Yee Hwa Yang posted to mrna module microrna bioinfo by tonamswish to the group microRNA on 2009-09-01 15:01:09 as along with 6 people sterovetta guhjy nuin ericsuh ealloza pengchy
	Controlling Messenger RNA Stability in Bacteria: Strategies for Engineering Gene Expression [My Copy] Biotechnology Progress, Vol. 13, No. 6. (c 1997), pp. 699-708. by Trent A. Carrier, J. D. Keasling posted to synthetic_biology stability mrna gene_expression bacteria by Vincent_Rouilly on 2009-09-01 10:17:41 as along with 1 person austin
	mRNA-Seq whole-transcriptome analysis of a single cell [My Copy] Nature Methods, Vol. 6, No. 5. (06 April 2009), pp. 377-382. by Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, et al.Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B. Tuch, Asim Siddiqui, Kaiqin Lao, M. Azim Surani posted to transcriptome single_cell_analysis sequencing mrna dna by Vincent_Rouilly on 2009-08-21 15:22:32 as along with 14 people inesdesantiago heliopais manduca debasis mtagaya woodson8 gdb guhjy kintoki fenghezi absterga jbhiatt pengchy sleepingcell
	Single-Cell Gene Expression Profiling [My Copy] Science, Vol. 297, No. 5582. (2 August 2002), pp. 836-840. by Jeffrey M. Levsky, Shailesh M. Shenoy, Rossanna C. Pezo, Robert H. Singer posted to single-cell mrna gene by marissalee on 2009-08-14 21:06:26 as along with 2 people mikaelhuss austin
	Visualizing the distribution and transport of mRNAs in living cells [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 23. (11 November 2003), pp. 13308-13313. by Diana P. Bratu, Byeong-Jik Cha, Musa M. Mhlanga, Fred R. Kramer, Sanjay Tyagi posted to mrna live_cell by marissalee on 2009-08-14 21:05:14 as
	Imaging of mRNA in Live Cells Using Nucleic Acid-Templated Reduction of Azidorhodamine Probes [My Copy] Journal of the American Chemical Society, Vol. 131, No. 18. (13 May 2009), pp. 6492-6497. by Zbigniew Pianowski, Katarzyna Gorska, Laurence Oswald, Christoph A. Merten, Nicolas Winssinger posted to rhodamine nucleic-acid mrna imaging cells azidorhodamine azide by marissalee on 2009-08-14 20:46:43 as along with 2 people and 1 group jianfengcai samjlord moernerlab
	Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 218. by Yu-Ping P. Wang, Kuo-Bin B. Li posted to cancer ma mirna mrna nci-60 by guhjy on 2009-08-05 02:57:27 as along with 10 people and 1 group giovenko marti lwaldron daforerog samgj shikin ealloza dswan natstreet Stew Bioinformatics - CRUK
	Recoding of translation in turtle mitochondrial genomes: programmed frameshift mutations and evidence of a modified genetic code. [My Copy] Journal of molecular evolution, Vol. 67, No. 6. (December 2008), pp. 682-695. by R. David Russell, Andrew T. Beckenbach posted to frameshift genetic_code mitochondria mitochondrial_dna mrna protein_translation by biomcgary on 2009-07-30 20:51:05 as
	Ribonucleoprotein dynamics connects mRNA networks with drug mechanisms [My Copy] Mol Syst Biol, Vol. 5 (28 July 2009) by Myriam Gorospe posted to drug mrna network post-transcription by mingzhi on 2009-07-29 14:44:07 as
	Multi-class cancer classification through gene expression profiles: microRNA versus mRNA. [My Copy] Journal of genetics and genomics = Yi chuan xue bao, Vol. 36, No. 7. (July 2009), pp. 409-416. by S. Peng, X. Zeng, X. Li, X. Peng, L. Chen posted to cancer expression mirna mrna by samgj on 2009-07-29 10:02:41 as
	Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members. [My Copy] Molecular cell, Vol. 33, No. 4. (27 February 2009), pp. 438-449. by M. Blanchette, R. E. Green, S. MacArthur, et al.A. N. Brooks, S. E. Brenner, M. B. Eisen, D. C. Rio posted to binding drosophila hnrnp mrna rna by Stew to the group Bioinformatics - CRUK on 2009-07-23 16:44:29 as
	Widespread Positive Selection in Synonymous Sites of Mammalian Genes [My Copy] Mol Biol Evol, Vol. 24, No. 8. (1 August 2007), pp. 1821-1831. by Alissa M. Resch, Liran Carmel, Leonardo Marino-Ramirez, et al.Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Igor B. Rogozin, Eugene V. Koonin posted to evolution_rate evolutionary_constraint gene_expression intron mrna mrna_decay non-synonymous_site selection selection_positive synonymous_site by biomcgary on 2009-07-21 22:17:39 as along with 3 people ilyashl operon bpcusack
	PALMA: mRNA to genome alignments using large margin algorithms [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1892-1900. by Uta Schulze, Bettina Hepp, Cheng S. Ong, Gunnar Ratsch posted to alignment genome mrna palma by n00c on 2009-07-12 17:12:45 as along with 6 people and 1 group thegoose2 natstreet druvus tharris cjeans GustavoLacerda C. elegans / WormBase
	Tissue and Process Specific microRNA–mRNA Co-Expression in Mammalian Development and Malignancy [My Copy] PLoS ONE, Vol. 4, No. 5. (5 May 2009), e5436. by Hongye Liu, Issac S. Kohane posted to co-expression microrna mrna specific tissue by gdb on 2009-07-11 16:23:14 as along with 4 people and 1 group tonamswish giovenko roys ealloza microRNA
	The process of mRNAâtRNA translocation [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 50. (11 December 2007), pp. 19671-19678. by Joachim Frank, Haixiao Gao, Jayati Sengupta, Ning Gao, Derek J. Taylor posted to cryo-em crystal_structure mrna ribosome translation translocation trna by kirasato on 2009-07-10 01:51:23 as along with 1 person zeldin
	Structure of the 70S ribosome complexed with mRNA and tRNA. [My Copy] Science (New York, N.Y.), Vol. 313, No. 5795. (29 September 2006), pp. 1935-1942. by M. Selmer, C. M. Dunham, F. V. Murphy, et al.A. Weixlbaumer, S. Petry, A. C. Kelley, J. R. Weir, V. Ramakrishnan posted to crystal_structure mrna ribosome translation trna by kirasato on 2009-07-10 01:49:43 as along with 4 people Nuffnuff cactus saunders jrweir82
	Structural basis for messenger RNA movement on the ribosome. [My Copy] Nature, Vol. 444, No. 7117. (16 November 2006), pp. 391-394. by G. Yusupova, L. Jenner, B. Rees, D. Moras, M. Yusupov posted to crystal_structure mrna ribosome translation translocation trna by kirasato on 2009-07-10 01:48:23 as along with 3 people and 2 groups ivankel marcius braingrind BioinfoCIPF SGU-CIPF
	A peptide deformylase-ribosome complex reveals mechanism of nascent chain processing. [My Copy] Nature, Vol. 452, No. 7183. (6 March 2008), pp. 108-111. by R. Bingel-Erlenmeyer, R. Kohler, G. Kramer, et al.A. Sandikci, S. Antolić, T. Maier, C. Schaffitzel, B. Wiedmann, B. Bukau, N. Ban posted to folding mrna processing protein by saunders on 2009-07-03 15:01:41 as along with 1 person Evangelia
	Argonaute HITS-CLIP decodes microRNA\|[ndash]\|mRNA interaction maps [My Copy] Nature, Vol. 460, No. 7254. (17 June 2009), pp. 479-486. by Sung W. Chi, Julie B. Zang, Aldo Mele, Robert B. Darnell posted to ago bioinfo mirna mrna ternay_structure tool by tonamswish to the group microRNA on 2009-07-02 21:48:01 as along with 16 people and 2 groups pattersonee heliopais guhjy hcoller stajich rschulz natstreet kongl gbloeb fenghezi diaz0058 gdb jbhiatt megraw giovenko valeriehilgers Mycology Journal picks
	MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression [My Copy] Nucl. Acids Res., Vol. 37, No. Web Server issue. (6 May 2009), pp. gkp294-362. by Seungyoon Nam, Meng Li, Kwangmin Choi, Curtis Balch, Sun Kim, Kenneth P. Nephew posted to analysis application biological examining expression functions integrated microrna mrna server site tool web workflow by dswan to the group Bioinformatics on 2009-06-30 10:39:33 as along with 6 people and 2 groups PabloMarin guhjy nuin heliopais ealloza daforerog Journal picks microRNA
	CellMiner: a relational database and query tool for the NCI-60 cancer cell lines [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 277. by Uma Shankavaram, Sudhir Varma, David Kane, et al.Margot Sunshine, Krishna Chary, William Reinhold, Yves Pommier, John Weinstein posted to acgh affymetrix analysis cancer cell database integrated lines microarray mirna mrna by fpattyn on 2009-06-24 13:03:10 as
	An investigation into the population abundance distribution of mRNAs, proteins, and metabolites in biological systems. [My Copy] Bioinformatics (Oxford, England) (17 June 2009) by Chuan Lu, Ross D. King posted to metabolism mrna statistical-model statistics systems-biology by jmeppley on 2009-06-21 15:21:52 as
	Expression of mRNA for specific fibroblast growth factors associates with that of the myogenic markers MyoD and proliferating cell nuclear antigen in regenerating and overloaded rat plantaris muscle [My Copy] Acta Physiologica, Vol. 194, No. 2. (October 2008), pp. 149-159. by Tanaka, Y., Yamaguchi, et al. A., Fujikawa, T., Sakuma, K., Morita, I., Ishii, K. posted to and antigen associates cell expression factors fibroblast for growth in markers mrna muscle myod myogenic nuclear of overloaded plantaris proliferating rat regenerating specific that the with by skymaster on 2009-06-18 09:53:03 as
	Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing [My Copy] PLoS ONE, Vol. 4, No. 1. (23 January 2009), e4229. by Xiangqin Cui, Ann E. Loraine posted to affymetrix microarray mrna mrna-processing multiple-probe polyadenylation probe three-prime-expression-array by sebastien_vigneau on 2009-06-17 16:08:26 as along with 1 person ivanek
	Prediction of regulatory modules comprising microRNAs and target genes. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by S. Yoon, G. De Micheli posted to bioinfo co-clustering microrna mrna tool by tonamswish on 2009-06-14 20:36:46 as along with 5 people and 1 group padosori eckart_bindewald mortenlindow noano maralena microRNA
	Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 387-393. by Je-Gun Joung, Zhangjun Fei posted to bioinfo co-clustering mirna mrna probabilistic_learning tool by tonamswish on 2009-06-12 14:04:41 as along with 7 people and 1 group TRHvidsten jfr megraw tmmurali mhamada natstreet druvus microRNA
	Discovery of microRNA-mRNA modules via population-based probabilistic learning. [My Copy] Bioinformatics (9 March 2007) by Je-Gun G. Joung, Kyu-Baek B. Hwang, Jin-Wu W. Nam, Soo-Jin J. Kim, Byoung-Tak T. Zhang posted to bioinfo co-clustering microrna mrna plsa probabilistic_learning by tonamswish on 2009-06-12 14:03:25 as along with 5 people and 3 groups jfr andersbj ealloza lp2 heliopais Bioinformatics microRNA BioinfoCIPF

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protein	55
rna	49
expression	46
transcription	40
translation	40
microrna	39
ribosome	31
mirna	28
splicing	28
cancer	25
utr	24
gene	22
codon	20
correlation	19
human	18
structure	18
review	17
la	16
yeast	16
regulation	15
trna	15
bioinfo	14
target	14
tool	14
cell	13
evolution	13
polya	13
usage	13
bacteria	12
degradation	12
microarray	11
nmd	11
pathway	10
development	9
gene_expression	9
promoter	9
analysis	8
control	8
decay	8
genes	8
polyadenylation	8
prediction	8
stability	8
3-utr	7
conserved	7
drosophila	7
elongation	7
eukaryote	7
intron	7
ires	7
localization	7
motif	7
newtrp	7
polymerase	7
saccharomyces	7
sse	7
cells	6
database	6
frameshift	6
genomics	6
massivly_parallel_sequencing	6
pombe	6
post-transcriptional	6
untranslated	6
virus	6
affinity	5
bioinformatics	5
brain	5
cdc2l5	5
cdk13	5
cv_cmmorel	5
cycl	5
ecoli	5
folding	5
function	5
hypothesis	5
kinase	5
maturation	5
network	5
nonsensemediated	5
nuclear_export	5
processing	5
profiling	5
read	5
regulatory_element	5
rt-pcr	5
transcriptome	5
viral	5
cerevisiae	4
cyclinl	4
dna	4
eukaryotic	4
mechanism	4
nucleus	4
p	4
pitaivre	4
pseudoknot	4
rat	4
secondary_structure	4
synthesis	4

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