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Tag mrna [199 articles]

Recent papers classified by the tag mrna.
  • Messenger RNA assessment in clinical nephrology: perspectives and progress of methodology
    Nephrology Dialysis Transplantation, Vol. 20, No. 12. (December 2005), pp. 2598-2601.
    by Michael Eikmans, Hans J Baelde, Emile de Heer, Jan A Bruijn
    posted to mrna nephrology by yavanna on 2007-12-27 15:53:15 as **
  • SKAR Links Pre-mRNA Splicing to mTOR/S6K1-Mediated Enhanced Translation Efficiency of Spliced mRNAs
    Cell, Vol. 133, No. 2. (18 April 2008), pp. 303-313.
    by Xiaoju M Ma, Sang-Oh Yoon, Celeste J Richardson, Kristina Jülich, John Blenis
    posted to coupling efficiency mrna mtors6k1 pre-mrna rapamycin skar splicing translation by xico on 2008-07-03 02:31:49 as **
  • Origin of phenotypes: Genes and transcripts.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 682-690.
    by TR Gingeras
    posted to definition gene genome genome-wide genotype micro-rna mrna phenotype transcript transcription by xico on 2007-08-28 22:06:17 as ** along with 8 people and 4 groups jyuh balicea dchughes michC ghattem Garamonfok Jporci bertelsen Bioinformatics WetBiology G4ID Genetics-of-Gambling
  • P bodies: at the crossroads of post-transcriptional pathways
    Nature Reviews Molecular Cell Biology, Vol. 8, No. 1., pp. 9-22.
    by Ana Eulalio, Isabelle Behm-Ansmant, Elisa Izaurralde
    posted to bodies control maturation mrna p post-transcriptional by xico on 2006-12-23 01:10:21 as **** along with 2 people and 2 groups margaritis lzhonsailing Neuroscience WetBiology
  • A new subfamily of high molecular mass CDC2-related kinases with PITAI/VRE motifs.
    Biochem Biophys Res Commun, Vol. 279, No. 3. (29 December 2000), pp. 832-837.
    by F Marquès, Et Al
    posted to 5 cdc2-like cdc2-related cdc2l5 cdk cdk13 cell ctd cycl cycle cyclinl development early kinase motif mrna novel pitaivre rnapolii sea splicing sr subfamily synthesis urchin by xico on 2007-05-18 01:46:26 as read along with 1 group WetBiology
  • Regulation of transcript elongation through cooperative and ordered recruitment of cofactors
    J. Biol. Chem. (29 May 2007), M701420200.
    by Manish Sharma, Anuja A George, Badri N Singh, Naresh C Sahoo, Kanury V Rao
    posted to cofactor cofactors cooperative elongation mrna recruitment rnapii transcript by xico on 2007-06-04 22:40:54 as ** along with 1 person and 1 group epigenetics WetBiology
  • CELL SIGNALLING AND THE CONTROL OF PRE-mRNA SPLICING
    Nat Rev Mol Cell Biol, Vol. 5, No. 9. (2004), pp. 727-738.
    by Chanseok Shin, James L Manley
    posted to cell control mrna review signalling splicing by xico on 2006-11-01 23:16:08 as **** along with 1 person and 1 group gloria WetBiology
  • The spanish connection: transcription and mRNA processing get even closer.
    Cell, Vol. 120, No. 2. (28 January 2005), pp. 163-166.
    by M Ares, NJ Proudfoot
    posted to cap connection coupling mrna polya processing splicing transcription by xico on 2006-02-18 19:53:11 as **** along with 1 group WetBiology
  • CDK13/CDC2L5 interacts with L-type cyclins and regulates alternative splicing.
    Biochem Biophys Res Commun, Vol. 354, No. 3. (16 March 2007), pp. 735-740.
    by HH Chen, YH Wong, AM Geneviere, MJ Fann
    posted to alternative cdc2l5 cdk13 ched cycl cyclinl mrna norvegicus pitaivre rattus splicing sub-family by xico on 2007-04-08 23:35:05 as read along with 1 group WetBiology
  • CDK13: A NEW POTENTIAL HIV-1 INHIBITORY FACTOR REGULATING VIRAL mRNA SPLICING
    J. Virol. (14 May 2008), JVI.02543-07.
    by Reem Berro, Caitlin Pedati, Kylene Kehn-Hall, Weilin Wu, Zachary Klase, Yasmine Even, Anne-Marie Geneviere, Tatiana Ammosova, Sergei Nekhai, Fatah Kashanchi
    posted to aids asfsf2 cdc2l5 cdc2-related cdk13 ched cycl cyclin cyclin-l factor hiv kinase mrna restriction sea splicing tat transactivation urchin virus by xico on 2008-07-08 15:30:39 as ** along with 1 person mblwhoi
  • Interactions between fission yeast Cdk9, its cyclin partner Pch1, and mRNA capping enzyme Pct1 suggest an elongation checkpoint for mRNA quality control.
    J Biol Chem, Vol. 278, No. 9. (28 February 2003), pp. 7180-7188.
    by Y Pei, B Schwer, S Shuman
    posted to cdk9 checkpoint control cyclin elongation fission mrna pch1 pct1 quality spcdk9 transcription yeast by xico on 2006-02-05 00:33:39 as read along with 1 person and 1 group gloria WetBiology
  • Exploring functional relationships between components of the gene expression machinery.
    Nat Struct Mol Biol, Vol. 12, No. 2. (February 2005), pp. 175-182.
    by T Burckin, R Nagel, Y Mandel-Gutfreund, L Shiue, TA Clark, JL Chong, TH Chang, S Squazzo, G Hartzog, M Ares
    posted to elongation expression gene machinery maturation mrna review splicing transcription by xico on 2007-06-06 16:28:43 as ** along with 2 people and 1 group balajis opheliav WetBiology
  • Rapid degradation of polyadenylated oop RNA
    FEBS Letters, Vol. 432, No. 1-2. (31 July 1998), pp. 70-72.
    by Agnieszka Szalewska-Palasz, Borys Wrobel, Grzegorz Wegrzyn
    posted to mrna polya by wxg119 on 2006-06-13 16:07:47 as **
  • RNA-conjugated template-switching RT-PCR method for generating an Escherichia coli cDNA library for small RNAs
    Journal of Microbiological Methods, Vol. 64, No. 3. (March 2006), pp. 297-304.
    by Jae-Hyeong Ko, Younghoon Lee
    posted to mrna polya by wxg119 on 2006-06-13 23:32:06 as **
  • Poly(A)-polymerase I links transcription with mRNA degradation via S proteolysis
    Molecular Microbiology, Vol. 60, No. 1. (April 2006), pp. 177-188.
    by Jorge M Santos, Patrick Freire, Francisco S Mesquita, Franziska Mika, Regine Hengge, Cecilia M Arraiano
    posted to mrna polya by wxg119 on 2006-06-13 16:23:05 as **
  • The role of RNA stability during bacterial stress responses and starvation. Minireview
    Environmental Microbiology, Vol. 2, No. 4. (2000), pp. 355-365.
    by Kathy Takayama, Staffan Kjelleberg
    posted to bacteria mrna stability by wxg119 on 2006-06-13 17:04:11 as **
  • Poly(A) polymerase activity and RNA polyadenylation in Streptomyces coelicolor A3(2)
    Molecular Microbiology, Vol. 40, No. 5. (2001), pp. 1155-1164.
    by Patricia Bralley, George H Jones
    posted to bacteria mrna polya by wxg119 on 2006-06-13 16:39:01 as **
  • Stationary Phase-Specific mRNAs inEscherichia coliAre Polyadenylated
    Biochemical and Biophysical Research Communications, Vol. 239, No. 1. (9 October 1997), pp. 46-50.
    by Gong-Jie Cao, Nilima Sarkar
    posted to bacteria mrna polya by wxg119 on 2006-06-13 16:10:02 as **
  • The Poly(A) Tail of mRNAs: Bodyguard in Eukaryotes, Scavenger in Bacteria
    Cell, Vol. 111, No. 5. (27 November 2002), pp. 611-613.
    by Marc Dreyfus, Philippe Regnier
    posted to mrna polya by wxg119 on 2006-06-13 23:42:18 as **
  • From the Cover: Microbial community gene expression in ocean surface waters
    Proceedings of the National Academy of Sciences, Vol. 105, No. 10. (11 March 2008), pp. 3805-3810.
    by Jorge Frias-Lopez, Yanmei Shi, Gene W Tyson, Maureen L Coleman, Stephan C Schuster, Sallie W Chisholm, Edward F Delong
    posted to bacteria metagenomics mrna ocean picoplankton by vaulot on 2008-04-28 02:26:31 as read along with 4 people and 3 groups mcox tmmurali mjetten jlgreen microbiology_nijmegen Green Lab iSEEM
  • Expression of multiple gamma-glutamyl transpeptidase messenger ribonucleic acid transcripts in the adult rat epididymis is differentially regulated by androgens and testicular factors in a region-specific manner.
    Endocrinology, Vol. 135, No. 3. (September 1994), pp. 1146-1156.
    by MA Palladino, BT Hinton
    posted to androgen epididymis gamma-glutamyl_transpeptidase mrna rat testicular_factors by uz_labu_laimi on 2007-05-31 21:58:20 as **
  • From mRNA metabolism to cancer therapy: chronic myelogenous leukemia shows the way.
    Clin Cancer Res, Vol. 13, No. 6. (15 March 2007), pp. 1638-1642.
    by D Perrotti, P Neviani
    posted to cancer chronic_myelogenous_leukaemia hnrnp_k mrna mrna_metabolism review rna_binding_protein by uz_labu_laimi on 2007-04-24 22:35:07 as **
  • Relationship between chromatin organization, mRNAs profile and human male gamete quality.
    Asian J Androl, Vol. 9, No. 5. (September 2007), pp. 587-592.
    by I Galeraud-Denis, S Lambard, S Carreau
    posted to chromatin chromatin_organisation gamete_quality human mrna mrna_profile sperm_chromatin transcription by uz_labu_laimi on 2007-08-27 17:13:11 as **
  • Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation.
    Plant J, Vol. 45, No. 5. (March 2006), pp. 712-726.
    by H Shin, HS Shin, R Chen, MJ Harrison
    posted to mrna by tardigrade on 2006-02-09 13:29:20 as ** along with 1 person byy
  • A microRNA expression signature of human solid tumors defines cancer gene targets.
    Proc Natl Acad Sci U S A (3 February 2006)
    by Stefano Volinia, George A A Calin, Chang-Gong G Liu, Stefan Ambs, Amelia Cimmino, Fabio Petrocca, Rosa Visone, Marilena Iorio, Claudia Roldo, Manuela Ferracin, Robyn L L Prueitt, Nozumu Yanaihara, Giovanni Lanza, Aldo Scarpa, Andrea Vecchione, Massimo Negrini, Curtis C C Harris, Carlo M M Croce
    posted to mrna by tardigrade on 2006-02-09 13:28:38 as ** along with 9 people and 2 groups jfr andersbj mtagaya panetebrother ealloza Garamonfok hejin930 maralena srp33 microRNA BioinfoCIPF
  • Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing.
    Genome Res (17 May 2005)
    by Evgeny A A Glazov, Michael Pheasant, Elizabeth A A McGraw, Gill Bejerano, John S S Mattick
    posted to drosophila insect mrna splicing ultraconserved by Stew on 2007-09-19 18:41:01 as **** along with 3 people and 1 group operon ujh sujaikumar EisenLab
  • UAP56 RNA helicase is required for axis specification and cytoplasmic mRNA localization in Drosophila.
    Developmental biology, Vol. 315, No. 1. (1 March 2008), pp. 89-98.
    by C Meignin, I Davis
    posted to localization mrna by stefanjanusz on 2008-07-01 12:33:33 as **
  • Npp106p, a Schizosaccharomyces pombe nucleoporin similar to Saccharomyces cerevisiae Nic96p, functionally interacts with Rae1p in mRNA export.
    Mol Cell Biol, Vol. 17, No. 12. (December 1997), pp. 7047-7060.
    by JH Yoon, WA Whalen, A Bharathi, R Shen, R Dhar
    posted to mrna nuclear_export pombe by stajich on 2007-12-24 03:18:36 as ** along with 1 group Berkeley Mycology
  • Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells.
    Proceedings of the National Academy of Sciences of the United States of America (5 May 2008)
    by Gianfranco Di Segni, Serena Gastaldi, Glauco P P Tocchini-Valentini
    posted to mrna splicing transcription trna by stajich on 2008-06-02 03:20:12 as ** along with 3 people and 1 group austin sebastien_vigneau inesdesantiago Berkeley Mycology
  • Exonic splicing enhancers in fission yeast: functional conservation demonstrates an early evolutionary origin
    Genes Dev., Vol. 19, No. 2. (15 January 2005), pp. 242-254.
    by Christopher J Webb, Charles M Romfo, Willem J van Heeckeren, Jo A Wise
    posted to evolution fungal fungi mrna splicing spombe by stajich on 2006-12-08 19:50:10 as **
  • Transcript Specificity in Yeast Pre-mRNA Splicing Revealed by Mutations in Core Spliceosomal Components
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e90.
    by Jeffrey A Pleiss, Gregg B Whitworth, Megan Bergkessel, Christine Guthrie
    posted to intron mrna saccharomyces splicing by stajich on 2007-04-24 18:05:20 as **
  • Schizosaccharomyces pombe nup97, which Genetically Interacts with mex67, is essential for growth and involved in mRNA export.
    J Microbiol, Vol. 45, No. 4. (August 2007), pp. 344-349.
    by HJ Cho, DK Hwang, SI Jung, JH Yoon
    posted to mrna nuclear_export pombe by stajich on 2007-12-24 03:18:14 as ** along with 1 group Berkeley Mycology
  • Genome-wide Analysis of Pre-mRNA Splicing: INTRON FEATURES GOVERN THE REQUIREMENT FOR THE SECOND-STEP FACTOR, Prp17 IN SACCHAROMYCES CEREVISIAE AND SCHIZOSACCHAROMYCES POMBE
    J. Biol. Chem., Vol. 279, No. 50. (10 December 2004), pp. 52437-52446.
    by Aparna K Sapra, Yoav Arava, Piyush Khandelia, Usha Vijayraghavan
    posted to intron mrna yeast by stajich on 2007-11-06 00:56:04 as **
  • Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and Number of Protein-Protein Interactions
    Molecular Biology and Evolution, Vol. 22, No. 5. (15 May 2005), pp. 1345-1354.
    by Bernardo Lemos, Brian R Bettencourt, Colin D Meiklejohn, Daniel L Hartl
    posted to abundance drosophila evolution expression gene interaction length molevoltestis mrna protein protein-protein by skumagai on 2008-06-06 14:28:12 as read along with 2 people and 1 group penka Garamonfok Nie
  • Primary microRNA transcripts are processed co-transcriptionally
    Nature Structural & Molecular Biology, Vol. 15, No. 9. (31 August 2008), pp. 902-909.
    by Mariangela Morlando, Monica Ballarino, Natalia Gromak, Francesca Pagano, Irene Bozzoni, Nick J Proudfoot
    posted to processing mrna microrna exonuclease drosha cotranscription by sg45653 on 2008-09-07 04:07:50 as ** along with 2 people and 1 group caizhiqiang pengchy microRNA
  • Pre-mRNA Secondary Structures Influence Exon Recognition.
    PLoS Genet, Vol. 3, No. 11. (16 November 2007)
    by Michael Hiller, Zhaiyi Zhang, Rolf Backofen, Stefan Stamm
    posted to exon mrna rna splicing by sebastien_vigneau on 2007-11-22 11:17:35 as **
  • The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish
    The EMBO Journal, Vol. aop, No. current. (16 August 2007)
    by Marco Ferg, Remo Sanges, Jochen Gehrig, Janos Kiss, Matthias Bauer, Agnes Lovas, Monika Szabo, Lixin Yang, Uwe Straehle, Michael J Pankratz, Ferenc Olasz, Elia Stupka, Ferenc Muller
    posted to degradation midblastula mirna mrna tata tbp zebrafish by sebastien_vigneau on 2007-08-21 20:30:16 as **
  • Message on the web: mRNA and ER co-trafficking.
    Trends Cell Biol (19 January 2008)
    by Jeffrey E E Gerst
    posted to cytoskeleton er mrna reticulum by sebastien_vigneau on 2008-01-27 15:16:30 as **
  • Versatile applications of transcriptional pulsing to study mRNA turnover in mammalian cells.
    RNA (29 August 2007)
    by Chyi-Ying A Y Chen, Yukiko Yamashita, Tsung-Cheng C Chang, Akio Yamashita, Wenmiao Zhu, Zhenping Zhong, Ann-Bin B Shyu
    posted to mrna turnover by sebastien_vigneau on 2007-09-01 19:46:31 as **
  • The Drosophila hnRNP M homolog Rumpelstiltskin regulates nanos mRNA localization.
    Development (30 January 2008)
    by Roshan A A Jain, Elizabeth R R Gavis
    posted to drosophila hnrnp localization mrna nanos rumpelstiltskin by sebastien_vigneau on 2008-02-04 10:36:42 as **
  • Nuclear mRNA export requires specific FG nucleoporins for translocation through the nuclear pore complex.
    J Cell Biol, Vol. 178, No. 7. (24 September 2007), pp. 1121-1132.
    by LJ Terry, SR Wente
    posted to export mrna nuclear-envelope nuclear-pore by sebastien_vigneau on 2007-10-10 09:18:37 as **
  • Expression of sodium channels with different saxitoxin affinity during rat forebrain development
    Developmental Brain Research, Vol. 81, No. 1. (12 August 1994), pp. 26-40.
    by Raimundo Villegas, Cecilia Castillo, Maria E Poo, Santiago Schnell, Carolina Piernavieja, Domingo Balbi, Gloria M Villegas
    posted to affinity channel forebrain mrna receptor saxitoxin single sodium by schnell on 2006-10-21 00:30:37 as *** along with 1 group IU_Informatics_CX
  • Reinvestigating the codon and amino acid usage of S. cerevisiae genome: a new insight from protein secondary structure analysis.
    Biochem Biophys Res Commun, Vol. 354, No. 3. (16 March 2007), pp. 693-699.
    by B Kahali, S Basak, TC Ghosh
    posted to codon mrna protein sse usage by saunders on 2008-01-09 16:14:27 as **
  • CodonO: codon usage bias analysis within and across genomes.
    Nucleic Acids Res (30 May 2007)
    by Michael C C Angellotti, Shafquat B B Bhuiyan, Guorong Chen, Xiu-Feng F Wan
    posted to codon mrna rate translation usage by saunders on 2008-07-17 11:42:19 as ** along with 3 people and 1 group operon papamicd kiara Bioinformatics
  • Folding type specific secondary structure propensities of synonymous codons.
    IEEE Trans Nanobioscience, Vol. 2, No. 3. (September 2003), pp. 150-157.
    by W Gu, T Zhou, J Ma, X Sun, Z Lu
    posted to codon mrna sse usage by saunders on 2008-01-09 15:13:29 as ** along with 1 person gpalidwor
  • Codon usage bias in Chlamydia trachomatis and the effect of codon modification in the MOMP gene on immune responses to vaccination.
    Biochemistry and cell biology = Biochimie et biologie cellulaire, Vol. 85, No. 2. (April 2007), pp. 218-226.
    by Y Zheng, WM Zhao, H Wang, YB Zhou, Y Luan, M Qi, YZ Cheng, W Tang, J Liu, H Yu, XP Yu, YJ Fan, X Yang
    posted to codon expression mrna usage by saunders on 2008-04-15 15:28:58 as **
  • Nucleic acid composition, codon usage, and the rate of synonymous substitution in protein-coding genes.
    J Mol Evol, Vol. 28, No. 4. (April 1989), pp. 286-298.
    by A Ticher, D Graur
    posted to codon mrna protein sse usage by saunders on 2008-01-09 15:58:14 as **
  • The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens.
    Biosystems, Vol. 73, No. 2. (February 2004), pp. 89-97.
    by W Gu, T Zhou, J Ma, X Sun, Z Lu
    posted to codon mrna protein sse usage by saunders on 2008-01-09 15:15:53 as **
  • Distribution of rare triplets along mRNA and their relation to protein folding.
    J Biomol Struct Dyn, Vol. 20, No. 3. (December 2002), pp. 413-420.
    by CH Makhoul, EN Trifonov
    posted to codon folding mrna protein structure usage by saunders on 2008-04-14 16:35:04 as ** along with 1 person gpalidwor
  • Synonymous codon usage in different protein secondary structural classes of human genes: implication for increased non-randomness of GC3 rich genes towards protein stability.
    J Biosci, Vol. 32, No. 5. (August 2007), pp. 947-963.
    by P Mukhopadhyay, S Basak, TC Ghosh
    posted to codon mrna sse usage by saunders on 2008-01-09 15:08:42 as **
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