Tag mrna [at least 200 articles] Export

Recent papers classified by the tag mrna.

	Amino Acid Propensities are Position-dependent Throughout the Length of α-Helices☆ [My Copy] Journal of Molecular Biology, Vol. 337, No. 5. (09 April 2004), pp. 1195-1205. by Donald E. Engel, William F. DeGrado posted to structure secondary propensity mrna helix amino alpha acid by saunders on 2009-11-26 15:21:23 as
	Amino acid empirical contact energy definitions for fold recognition in the space of contact maps [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (2003), 8. by Marco Berrera, Henriette Molinari, Federico Fogolari posted to structure secondary propensity mrna amino acid by saunders on 2009-11-26 15:20:14 as
	Colorectal cancer cell-derived microvesicles are enriched in cell cycle-related mRNAs that promote proliferation of endothelial cells [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 556. by Bok S. Hong, Ji H. Cho, Hyunjung Kim, et al.Eun J. Choi, Sanchul Rho, Jongmin Kim, Ji H. Kim, Dong S. Choi, Yoon K. Kim, Daehee Hwang, Yong S. Gho posted to proliferation mrna microvesicles colorectal cancer by neils on 2009-11-25 22:17:48 as
	RNA recognition by the embryonic cell fate determinant and germline totipotency factor MEX-3 [My Copy] Proceedings of the National Academy of Sciences (13 November 2009) by John M. Pagano, Brian M. Farley, Kingsley I. Essien, Sean P. Ryder posted to transcription regulatory_mechanisms regulatory regulation_of_gene_expression mrna motif genome consensus_sequence cinquinproject biology by kmdaily on 2009-11-25 03:23:51 as
	Control of mRNA processing and decay in prokaryotes [My Copy] Genetica, Vol. 94, No. 2. (1 June 1994), pp. 157-172. by Pietro Alifano, Carmelo B. Bruni, Maria S. Carlomagno posted to stability review mrna degradation bacteria by jjray on 2009-11-19 22:40:02 as
	RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation [My Copy] Nature, Vol. 374, No. 6518. (09 March 1995), pp. 180-183. by Fengfeng Xu, Stanley Cohen, N. posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 22:03:07 as
	MESSENGER RNA STABILITY AND ITS ROLE IN CONTROL OF GENE EXPRESSION IN BACTERIA AND PHAGES [My Copy] Annual Review of Genetics, Vol. 33, No. 1. (1999), pp. 193-227. by Marianne G. Manago posted to stability review mrna gene_expression feedback degradation bacteria by jjray on 2009-11-19 21:46:47 as
	Differential mRNA stability controls relative gene expression within a polycistronic operon [My Copy] Cell, Vol. 51, No. 6. (24 December 1987), pp. 1131-1143. by S. F. Newbury, N. H. Smith, C. F. Higgins posted to stability operon mrna gene_expression e_coli bacteria by jjray on 2009-11-19 20:40:55 as
	Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. [My Copy] Molecular microbiology, Vol. 58, No. 5. (December 2005), pp. 1421-1429. by Anders Aamann A. Rasmussen, Maiken Eriksen, Kambiz Gilany, et al.Christina Udesen, Thomas Franch, Carsten Petersen, Poul Valentin-Hansen posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:14:28 as
	The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells. [My Copy] Nucleic acids research, Vol. 34, No. 19. (November 2006), pp. 5695-5704. by Bijoy K. Mohanty, Sidney R. Kushner posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:14:12 as
	The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. [My Copy] Molecular microbiology, Vol. 54, No. 4. (November 2004), pp. 905-920. by Bijoy K. Mohanty, Valerie F. Maples, Sidney R. Kushner posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:13:15 as
	Global analysis of Escherichia coli RNA degradosome function using DNA microarrays. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9. (2 March 2004), pp. 2758-2763. by Jonathan A. Bernstein, Pei-Hsun H. Lin, Stanley N. Cohen, Sue Lin-Chao posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:12:47 as
	Genomic analysis of mRNA decay in E. coli with DNA microarrays. [My Copy] Methods in enzymology, Vol. 447 (2008), pp. 47-64. by Pei-Hsun H. Lin, Dharam Singh, Jonathan A. Bernstein, Sue Lin-Chao posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:11:44 as
	RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. [My Copy] Genes & development, Vol. 19, No. 18. (15 September 2005), pp. 2176-2186. by Teppei Morita, Kimika Maki, Hiroji Aiba posted to stability rnase mrna e_coli bacteria by jjray on 2009-11-19 18:11:11 as along with 2 people sglandt martainn
	Growth-rate dependent regulation of mRNA stability in Escherichia coli. [My Copy] Nature, Vol. 312, No. 5989. (7 1984), pp. 75-77. by G. Nilsson, J. G. Belasco, S. N. Cohen, A. von Gabain posted to stability mrna growth_rate e_coli bacteria by jjray on 2009-11-19 18:10:08 as
	Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 15. (23 July 2002), pp. 9697-9702. by Jonathan A. Bernstein, Arkady B. Khodursky, Pei-Hsun Lin, Sue Lin-Chao, Stanley N. Cohen posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 17:41:29 as along with 4 people athma bjorns balajis madhadron
	Low Complexity Regions behave as tRNA sponges to help co-translational folding of plasmodial proteins. [My Copy] FEBS letters (6 November 2009) by Magali Frugier, Tania Bour, Maya Ayach, Manuel A. Santos, Joëlle Rudinger-Thirion, Anne Théobald-Dietrich posted to structure plasmodium mrna low complexity co-translationaolding by saunders on 2009-11-18 17:08:10 as
	Control of translation by the conformation of messenger RNA. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 68, No. 3. (March 1971), pp. 570-573. by H. Fukami, K. Imahori posted to translation structure mrna accuracy by saunders on 2009-11-18 17:00:54 as
	The secondary structure of mRNAs from Escherichia coli: its possible role in increasing the accuracy of translation. [My Copy] Nucleic acids research, Vol. 13, No. 1. (11 January 1985), pp. 275-288. by E. G. Shpaer posted to translation structure secondary protein mrna by saunders on 2009-11-18 16:56:22 as
	The relationship between third-codon position nucleotide content, codon bias, mRNA secondary structure and gene expression in the drosophilid alcohol dehydrogenase genes Adh and Adhr. [My Copy] Genetics, Vol. 159, No. 2. (October 2001), pp. 623-633. by D. B. Carlini, Y. Chen, W. Stephan posted to translation structure mrna codon by saunders on 2009-11-18 16:49:06 as
	Statistical correlation between protein secondary structure and messenger RNA stem-loop structure. [My Copy] Biopolymers, Vol. 73, No. 1. (January 2004), pp. 16-26. by Mengwen Jia, Liaofu Luo, Ciquan Liu posted to structure stem secondary protein mrna loop by saunders on 2009-11-18 16:12:32 as along with 2 people yuehua bpcusack
	An Integrated Sequence-Structure Database incorporating matching mRNA sequence, amino acid sequence and protein three-dimensional structure data. [My Copy] Nucleic acids research, Vol. 26, No. 1. (1 January 1998), pp. 327-331. by I. A. Adzhubei, A. A. Adzhubei, S. Neidle posted to protein mrna database csands by saunders on 2009-11-18 16:11:32 as
	Chromatin poises miRNA- and protein-coding genes for expression. [My Copy] Genome research, Vol. 19, No. 10. (27 October 2009), pp. 1742-1751. by Artem Barski, Raja Jothi, Suresh Cuddapah, et al.Kairong Cui, Tae-Young Y. Roh, Dustin E. Schones, Keji Zhao posted to mrna microrna chromatin by tonamswish on 2009-11-18 15:31:35 as along with 9 people and 2 groups heliopais samgj polivares megraw inesdesantiago fpattyn djkt fenghezi idonaldson microRNA Neuroblastoma
	Effect of Translational Signals on mRNA Decay in Bacillus subtilis [My Copy] J. Bacteriol., Vol. 185, No. 18. (15 September 2003), pp. 5372-5379. by Josh S. Sharp, David H. Bechhofer posted to translational subtilis stability signals processing mrna effect decay bacillus by Winzer on 2009-11-18 11:06:07 as
	Lost in translation: the influence of ribosomes on bacterial mRNA decay [My Copy] Genes & Development, Vol. 19, No. 21. (1 November 2005), pp. 2526-2533. by Atilio Deana, Joel G. Belasco posted to translation ribosomes mrna endonucleases decay bacteria by Winzer on 2009-11-18 10:53:02 as along with 1 person perrywoo
	Participation of 3'-to-5' Exoribonucleases in the Turnover of Bacillus subtilis mRNA [My Copy] J. Bacteriol., Vol. 187, No. 8. (15 April 2005), pp. 2758-2767. by Irina A. Oussenko, Teppei Abe, Hiromi Ujiie, Akira Muto, David H. Bechhofer posted to turnover subtilis participation mrna exoribonucleases bacillus 3-to-5 by Winzer on 2009-11-18 10:45:35 as
	Processing and Stability of Inducibly Expressed rpsO mRNA Derivatives in Bacillus subtilis [My Copy] J. Bacteriol., Vol. 191, No. 18. (15 September 2009), pp. 5680-5689. by Shiyi Yao, David H. Bechhofer posted to subtilis stability processing mrna expression bacillus by Winzer on 2009-11-18 10:39:25 as
	Engineering stochasticity in gene expression [My Copy] Mol. BioSyst., Vol. 4, No. 7. (July 2008), pp. 754-761. by Jeffrey J. Tabor, Travis S. Bayer, Zachary B. Simpson, Matthew Levy, Andrew D. Ellington posted to stochastic mrna gfp gene_expression facs by Vincent_Rouilly on 2009-11-13 17:15:38 as along with 3 people pkm austin jjray
	Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2CâmiRNA complexes and the degradation of miRNA targets [My Copy] Genome Research, Vol. 19, No. 11. (18 November 2009), pp. 2009-2020. by Jean Hausser, Markus Landthaler, Lukasz Jaskiewicz, Dimos Gaidatzis, Mihaela Zavolan posted to mrna mirna human degradation argonaute by chriscole on 2009-11-13 16:47:29 as along with 5 people and 1 group toni_marco heliopais megraw valeriehilgers daforerog microRNA
	GTOP: a database of protein structures predicted from genome sequences. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 294-298. by Takeshi Kawabata, Satoshi Fukuchi, Keiichi Homma, et al.Motonori Ota, Jiro Araki, Takehiko Ito, Nobuyuki Ichiyoshi, Ken Nishikawa posted to structure protein mrna gtop database by saunders on 2009-11-12 18:33:15 as along with 1 person tny
	The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by Satoshi Fukuchi, Keiichi Homma, Shigetaka Sakamoto, et al.Hideaki Sugawara, Yoshio Tateno, Takashi Gojobori, Ken Nishikawa posted to structure protein mrna gtop database by saunders on 2009-11-12 18:32:14 as along with 2 people tprpip guhjy
	A novel universal real-time PCR system using the attached universal duplex probes for quantitative analysis of nucleic acids [My Copy] BMC Molecular Biology, Vol. 9, No. 1. (04 June 2008), 54. by Litao Yang, Wanqi Liang, Lingxi Jiang, et al.Wenquan Li, Wei Cao, Zoe Wilson, Dabing Zhang posted to rt-pcr protocol mrna molecular_beacon by Vincent_Rouilly on 2009-11-12 14:34:37 as along with 2 people fpattyn guhjy
	The transcription unit architecture of the Escherichia coli genome. [My Copy] Nature biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan K. Cho, Karsten Zengler, Yu Qiu, et al.Young Seoub S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard Ø. Palsson posted to transcription mrna genome gene_regulation e_coli dna_binding chromosome_organization bacteria by jjray on 2009-11-09 03:49:20 as along with 5 people karthikraman venancio JeremyZucker dbikard rsaito
	The role of mRNA structure in translational control in bacteria. [My Copy] RNA biology, Vol. 6, No. 2. (n 2009), pp. 153-160. by Thomas Geissmann, Stefano Marzi, Pascale Romby posted to translation mrna gene_expression control by Vincent_Rouilly on 2009-11-05 08:02:39 as
	GMAP: a genomic mapping and alignment program for mRNA and EST sequences [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1859-1875. by Thomas D. Wu, Colin K. Watanabe posted to mrna mpss alignment by maren on 2009-10-29 21:33:58 as along with 5 people bozdagd natstreet druvus olympos yoanjacquemin
	Co-variation of tRNA Abundance and Codon Usage inEscherichia coliat Different Growth Rates [My Copy] Journal of Molecular Biology, Vol. 260, No. 5. (2 August 1996), pp. 649-663. by H. Dong posted to usage trna mrna ecoli concentration codon by saunders on 2009-10-27 15:13:25 as
	The XIAP IRES activates 3â² cistron expression by inducing production of monocistronic mRNA in the Î²gal/CAT bicistronic reporter system [My Copy] RNA, Vol. 15, No. 11. (November 2009), pp. 1980-1985. by Holly A. Saffran, James R. Smiley posted to x_chromosome promoter_activity mrna ires by ppgardne to the group Journal picks on 2009-10-16 09:02:07 as
	14-3-3 protein binds to the low molecular weight neurofilament (NFL) mRNA 3' UTR. [My Copy] Molecular and cellular neurosciences, Vol. 34, No. 1. (January 2007), pp. 80-87. by Wei-Wen W. Ge, Kathryn Volkening, Cheryl Leystra-Lantz, Howard Jaffe, Michael J. Strong posted to neurofilaments mrna 14-3-3 by nns1987 on 2009-10-14 09:22:19 as
	Introns Regulate the Rate of Unstable mRNA Decay [My Copy] Journal of Biological Chemistry, Vol. 282, No. 28. (13 July 2007), pp. 20230-20237. by Chenyang Zhao, Thomas Hamilton posted to mrna degradation by hcoller on 2009-10-14 03:46:55 as
	Quantifying mRNA synthesis and decay rates using small RNAs [My Copy] (11 Oct 2009) by Vlad Elgart, Tao Jia, Rahul Kulkarni posted to stochastic rate mrna mathematical_model by jjray on 2009-10-13 16:38:07 as
	P bodies: at the crossroads of post-transcriptional pathways [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 1. (01 January 2007), pp. 9-22. by Ana Eulalio, Isabelle Behm-Ansmant, Elisa Izaurralde posted to review regulation post-transcriptional pathways p-bodies mrna localization gene-expression cytoplasmic cell-biology by bertelsen on 2009-10-07 23:24:55 as along with 3 people and 2 groups xico margaritis lzhonsailing Neuroscience WetBiology
	Stress-dependent relocalization of translationally primed mRNPs to cytoplasmic granules that are kinetically and spatially distinct from P-bodies. [My Copy] The Journal of cell biology, Vol. 179, No. 1. (8 October 2007), pp. 65-74. by Nathaniel P. Hoyle, Lydia M. Castelli, Susan G. Campbell, Leah E. Holmes, Mark P. Ashe posted to p-bodies mrna localization epg-bodies cytoplasmic cell-biology by bertelsen on 2009-10-07 23:21:14 as along with 1 person dbenn
	Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647. by Rickard Sandberg, Joel R. Neilson, Arup Sarma, Phillip A. Sharp, Christopher B. Burge posted to target t-cell proliferation mrna mirna lymphocytes expression cells 3-utr by bertelsen on 2009-10-07 22:50:10 as along with 15 people and 1 group frohike danaiancu hcoller tonamswish ivanek valeriehilgers heliopais jfr dchughes djkt lisa1 bootsy emptyhb faion daforerog microRNA
	Aberrant regulation of messenger RNA 3'-untranslated region in human cancer. [My Copy] Cellular oncology : the official journal of the International Society for Cellular Oncology, Vol. 29, No. 1. (2007), pp. 1-17. by Isabel López de Silanes, María Paz P. Quesada, Manel Esteller posted to review regulation mrna human cancer 3-utr by bertelsen on 2009-10-07 22:17:09 as along with 1 person hcoller
	Conserved Expression Patterns Predict microRNA Targets [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (25 September 2009), e1000513. by William Ritchie, Megha Rajasekhar, Stephane Flamant, John E. J. Rasko posted to targets prediction pattern mrna microrna expression by ealloza on 2009-10-01 18:52:58 as along with 11 people and 1 group jperkins heliopais gdb samgj toni_marco neils ptrobajo al2na TRHvidsten djkt cisevol microRNA
	Reciprocal regulation of microRNA and mRNA profiles in neuronal development and synapse formation [My Copy] BMC Genomics, Vol. 10, No. 1. (8 September 2009), 419. by Sergei Manakov, Seth Grant, Anton Enright posted to mrna microrna gene expression dataset by akundaje on 2009-09-28 09:22:33 as along with 3 people and 2 groups heliopais daforerog danmaclean microRNA Gene Regulation
	Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 38. (22 September 2009), pp. 16399-16404. by Maria Valencia-Burton, Ankita Shah, Jason Sutin, et al.Azra Borogovac, Ron M. McCullough, Charles R. Cantor, Amit Meller, Natalia E. Broude posted to transcription spatial mrna kinetics gene_expression bacteria by jjray on 2009-09-27 16:59:03 as along with 1 person OliverHarriman
	Co-translational mRNA decay in Saccharomyces cerevisiae. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 225-229. by Wenqian Hu, Thomas J. Sweet, Sangpen Chamnongpol, Kristian E. Baker, Jeff Coller posted to ribosome protein_translation mrna_decay mrna gratuitous_reference by biomcgary on 2009-09-23 19:10:39 as along with 4 people and 1 group nzm jjray TRHvidsten bpcusack Journal picks
	mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer. [My Copy] Genome biology, Vol. 10, No. 9. (1 September 2009), R90. by Chao Cheng, Xuping Fu, Pedro Alves, Mark Gerstein posted to multimodal mrna microrna expression cancer breast by ptrobajo on 2009-09-21 14:07:55 as along with 5 people and 1 group frohike tonamswish megraw Schmidtc heliopais microRNA
	Bayesian unsupervised learning with multiple data types. [My Copy] Statistical applications in genetics and molecular biology, Vol. 8, No. 1. (2009) by Phaedra Agius, Yiming Ying, Colin Campbell posted to microrna unsupervised mrna cross-species cross-platform bayesian by ptrobajo on 2009-09-12 21:17:26 as

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protein	60
rna	49
expression	48
translation	45
transcription	42
microrna	40
ribosome	31
mirna	29
splicing	28
bacteria	27
structure	27
cancer	26
stability	24
utr	24
degradation	22
gene	22
codon	21
correlation	19
human	19
review	19
la	16
yeast	16
regulation	15
trna	15
bioinfo	14
e_coli	14
target	14
tool	14
cell	13
evolution	13
polya	13
usage	13
decay	12
gene_expression	12
microarray	11
nmd	11
pathway	10
database	9
development	9
processing	9
promoter	9
analysis	8
control	8
genes	8
motif	8
polyadenylation	8
prediction	8
3-utr	7
conserved	7
drosophila	7
elongation	7
eukaryote	7
intron	7
ires	7
localization	7
newtrp	7
polymerase	7
saccharomyces	7
sse	7
bacillus	6
cells	6
frameshift	6
genome	6
genomics	6
massivly_parallel_sequencing	6
pombe	6
post-transcriptional	6
rt-pcr	6
subtilis	6
untranslated	6
virus	6
affinity	5
bioinformatics	5
brain	5
cdc2l5	5
cdk13	5
chromatin	5
cv_cmmorel	5
cycl	5
ecoli	5
folding	5
function	5
hypothesis	5
kinase	5
maturation	5
network	5
nonsensemediated	5
nuclear_export	5
profiling	5
read	5
regulatory_element	5
transcriptome	5
viral	5
cerevisiae	4
cyclinl	4
dna	4
mechanism	4
nuclear	4
pitaivre	4
synthesis	4

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