Tag msa [144 articles] Export

Recent papers classified by the tag msa.

	Genetic Variants of the α-Synuclein Gene SNCA Are Associated with Multiple System Atrophy [My Copy] PLoS ONE, Vol. 4, No. 9. (22 September 2009), e7114. by Ammar Al-Chalabi, Alexandra Dürr, Nicholas W. Wood, et al.Michael H. Parkinson, Agnes Camuzat, Jean-Sébastien Hulot, Karen E. Morrison, Alan Renton, Sigurd D. Sussmuth, Bernhard G. Landwehrmeyer, Albert Ludolph, Yves Agid, Alexis Brice, P. Nigel Leigh, Gilbert Bensimon, for the NNIPPS Genetic Study Group posted to snp snca msa by giovanni on 2009-09-23 23:34:26 as
	Aligning multiple genomic sequences with the threaded blockset aligner. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 708-715. by Mathieu Blanchette, James J. Kent, Cathy Riemer, et al.Laura Elnitski, Arian F. Smit, Krishna M. Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D. Green, David Haussler, Webb Miller posted to tba msa alignment by aprasad on 2009-08-19 23:27:51 as along with 13 people and 1 group roys emptyhb nuin APRegier operon ujh indigoviolet csardas djkt yylin Neeperando maralena AlexanderPico EisenLab
	DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 66. by Amarendran Subramanian, Jan W. Menkhoff, Michael Kaufmann, Burkhard Morgenstern posted to dialign dialign-t msa oxbench by walshtp on 2009-07-29 10:44:36 as along with 3 people BioNica treangen moborg
	DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. [My Copy] Algorithms for molecular biology : AMB, Vol. 3, No. 1. (27 May 2008), 6. by Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern posted to dialign dialign-tx msa oxbench by walshtp on 2009-07-29 10:41:28 as along with 7 people Copper_Calcio BioNica druvus treangen operon reyez dquest
	MANETs: Performance Analysis and Management [My Copy] Military Communications Conference, 2006. MILCOM 2006. IEEE In Military Communications Conference, 2006. MILCOM 2006. IEEE (2006), pp. 1-7. by S. Demers, L. Kant posted to ad analysis link link-state linkstate management manet mobile modelling msa network olsr optimized optimized-link-state-routing performance routing simulation state wireless wireless-network adhoc ad-hoc hoc by hgfernan on 2009-07-10 01:17:53 as
	Fast Statistical Alignment [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000392. by Robert K. Bradley, Adam Roberts, Michael Smoot, et al.Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter posted to alignment msa by AlexBateman to the group Journal picks on 2009-06-01 10:43:11 as along with 18 people seb1 rdowell timflutre natstreet n00c yylin aprasad Gorzomagnificent guhjy dakelley reyez rec3141 farhat operon bmduggan nuin djkt druvus
	MAVID: Constrained Ancestral Alignment of Multiple Sequences [My Copy] Genome Research, Vol. 14, No. 4. (1 April 2004), pp. 693-699. by Nicolas Bray, Lior Pachter posted to alignment constrained msa pachtor by pradiptaray on 2009-05-23 05:28:12 as along with 5 people nuin treangen operon jmeppley Neeperando
	Multiple sequence alignment by conformational space annealing [My Copy] Biophys. J., Vol. 95, No. 10. (15 November 2008), pp. 4813-4819. by K. Joo, J. Lee, I. Kim, S. J. Lee, J. Lee posted to alignment casp8 msa by newton1234 on 2009-05-14 19:04:55 as
	A simple genetic algorithm for multiple sequence alignment. [My Copy] Genetics and molecular research : GMR, Vol. 6, No. 4. (2007), pp. 964-982. by C. Gondro, B. P. Kinghorn posted to alignment msa by newton1234 on 2009-05-14 18:50:58 as
	Algorithms for multiple protein structure alignment and structure-derived multiple sequence alignment. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 413 (2008), pp. 125-146. by M. Shatsky, R. Nussinov, H. J. Wolfson posted to alignment msa by newton1234 on 2009-05-14 18:49:17 as along with 1 person ramiro2k
	The Multiple Sequence Alignment Problem in Biology [My Copy] SIAM Journal on Applied Mathematics, Vol. 48, No. 5. (1988), pp. 1073-1082. by H. Carrillo, D. Lipman posted to alignment method msa by BioNica on 2009-05-12 23:39:34 as
	GLOBIO3: A Framework to Investigate Options for Reducing Global Terrestrial Biodiversity Loss [My Copy] Ecosystems by Rob Alkemade, Mark van Oorschot, Lera Miles, Christian Nellemann, Michel Bakkenes, Ben Ten~brink posted to - areas biodiversity bioenergy change climate forestry fragmentation infrastructure land-use msa nitrogen options policy protected by iwagner on 2009-04-02 17:27:34 as along with 3 people and 1 group Scis0000002 wcmc Flit biodiversity_conservation
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted to alignment duplication msa by djkt on 2009-04-01 20:07:53 as along with 12 people fstrozzi GustavoLacerda michaelbarton mlangill dakelley xwbcn Neeperando zwang nyyu semrich azazello mhamada
	Accurate Identification of Orthologous Segments among Multiple Genomes [My Copy] Bioinformatics (2 February 2009), btp070. by Tsuyoshi Hachiya, Yasunori Osana, Kris Popendorf, Yasubumi Sakakibara posted to chromosome duplication msa synteny by djkt on 2009-03-25 17:39:02 as along with 4 people guhjy dokky Neeperando druvus
	Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons [My Copy] Trends in Genetics, Vol. 22, No. 4. (April 2006), pp. 187-193. by Elliott H. Margulies, Christina W. Chen, Eric D. Green posted to alignment alignment_error msa by aprasad on 2009-03-05 21:26:45 as along with 5 people and 2 groups treangen shirleym dchughes smount gjuggler G4ID Genetics-of-Gambling
	Multiperm: shuffling multiple sequence alignments while approximately preserving dinucleotide frequencies [My Copy] Bioinformatics (9 January 2009), btp006. by Parvez Anandam, Elfar Torarinsson, Walter L. Ruzzo posted to msa testing by djkt on 2009-02-25 18:04:57 as along with 2 people idonaldson rschulz
	Non-coding RNA prediction and verification in Saccharomyces cerevisiae. [My Copy] PLoS genetics, Vol. 5, No. 1. (January 2009) by L. A. Kavanaugh, F. S. Dietrich posted to msa rna by djkt on 2009-02-06 14:14:55 as along with 2 people and 1 group ianholmes stajich Mycology
	Cardiovascular dysautonomia in Parkinson's disease and multiple system atrophy [My Copy] Acta Neurologica Scandinavica, Vol. 113, No. 4. (April 2006), pp. 221-227. by H. Oka, S. Mochio, M. Yoshioka, M. Morita, K. Onouchi, K. Inoue posted to autonomic bp diagnosis msa pd by kit on 2009-01-30 11:42:38 as
	Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment [My Copy] Bioinformatics (4 December 2008), btn630. by Benedict Paten, Javier Herrero, Kathryn Beal, Ewan Birney posted to alignment msa by djkt on 2009-01-29 21:55:21 as along with 9 people BioNica guhjy dakelley semrich gjuggler rschulz birney operon druvus
	A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. [My Copy] BMC bioinformatics, Vol. 9 (06 May 2008), 229. by Claudia Chica, Alberto Labarga, Cathryn M. Gould, Rodrigo López, Toby J. Gibson posted to conservation evolution motif msa by niallhaslam on 2009-01-15 15:42:12 as along with 6 people chica chad_davis Evangelia cabbagesofdoom biehl alanrw
	Sigma: multiple alignment of weakly-conserved non-coding DNA sequence. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (16 March 2006) by Rahul Siddharthan posted to alignment msa non-coding tools by aprasad on 2009-01-06 20:06:33 as along with 3 people and 2 groups cisevol dpollard lilou cis-regulatory-evolution EisenLab
	Clustal W and Clustal X version 2.0 [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948. by M. A. Larkin, G. Blackshields, N. P. Brown, et al.R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, D. G. Higgins posted to alignment clustal clustalw clustalx msa multiple sequence by hpm on 2008-12-24 16:36:46 as along with 18 people l00cas vprieto Copper_Calcio TLVincent tomjad BioNica udivi Keksle druvus treangen jwm cassj lisa1 ryanraaum bmaust alanrw mschofie marck
	Subcortical dementia revisited: Similarities and differences in cognitive function between progressive supranuclear palsy (PSP), corticobasal degeneration (CBD) and multiple system atrophy (MSA) [My Copy] Neurocase, Vol. 11, No. 4. (August 2005), pp. 268-273. by T. H. Bak, L. M. Crawford, V. C. Hearn, P. S. Mathuranath, Hodges posted to cbd comparison msa psp subcortical_dementias by belljar on 2008-12-12 13:48:48 as
	MAFFT version 5: improvement in accuracy of multiple sequence alignment. [My Copy] Nucleic acids research, Vol. 33, No. 2. (2005), pp. 511-518. by K. Katoh, K. Kuma, H. Toh, T. Miyata posted to alignment msa multiple sequence software by treangen on 2008-12-11 14:22:50 as along with 8 people and 1 group hryk BioNica druvus CharlesM caporaso rabio timflutre urgi biomedical-nlp
	Recent developments in the MAFFT multiple sequence alignment program. [My Copy] Briefings in bioinformatics (27 March 2008) by Kazutaka Katoh, Hiroyuki Toh posted to alignment msa multiple sequence software by treangen on 2008-12-11 14:22:29 as along with 3 people BioNica urgi timflutre
	A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000234. by Cedric Chauve, Eric Tannier posted to evolution genome msa sv by djkt on 2008-11-29 01:36:11 as along with 2 people and 1 group druvus cisevol BergmanLab
	Profile Comparer: a program for scoring and aligning profile hidden Markov models [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2630-2631. by Martin Madera posted to alignment hmm msa proteins by djkt to the group iSEEM on 2008-11-05 16:15:23 as along with 3 people tonamswish j3xucite nuin
	Teaching NeuroImage: MRI in multiple system atrophy: "Hot cross bun" sign and hyperintense rim bordering the putamina [My Copy] Neurology, Vol. 71, No. 15. (7 October 2008), e38. by Joao Massano, Fernando Costa, Goreti Nadais posted to diagnosis ftld mri msa neuroimaging by applebyb on 2008-10-13 00:20:03 as
	Confidence in comparative genomics [My Copy] Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 199-200. by Elliott H. Margulies posted to commentary comparative_genomics msa review by pengchy on 2008-10-04 02:44:20 as along with 7 people natstreet druvus treangen djkt xingxu maximilianh boudinot
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to evolution indel msa phylogenetics by djkt on 2008-09-26 18:53:18 as along with 11 people and 1 group BioNica mhamada treangen pradiptaray zwang nuin timflutre druvus aprasad gjuggler emptyhb iSEEM
	Cellular pathology of multiple system atrophy: a review. [My Copy] Journal of neurology, neurosurgery, and psychiatry, Vol. 57, No. 2. (February 1994), pp. 129-133. by P. L. Lantos, M. I. Papp posted to 1994 msa synuclein by psique to the group parkinson's disease references on 2008-09-15 11:58:37 as
	Multiple sequence alignment with the Clustal series of programs [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3497-3500. by Ramu Chenna, Hideaki Sugawara, Tadashi Koike, et al.Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie D. Thompson posted to msa by marck on 2008-08-30 09:37:29 as along with 8 people and 1 group vprieto BioNica Lombardo_7 miguel chad_davis beatrizfernandez raylim xingxu Microbial-Ecology
	Segment-based multiple sequence alignment [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i187-192. by Tobias Rausch, Anne K. Emde, David Weese, Andreas Doring, Cedric Notredame, Knut Reinert posted to alignment methods msa tools by aprasad on 2008-08-13 18:59:33 as along with 9 people nuin BioNica darian Md_2007 zwang Ema APRegier djkt groepl
	Context dependence, ancestral misidentification, and spurious signatures of natural selection [My Copy] Mol. Biol. Evol., Vol. 24, No. 8. (2007), pp. 1792-1800. by R. D. Hernandez, S. H. Williamson, C. D. Bustamante posted to msa popgen snps by djkt on 2008-08-08 01:33:45 as along with 2 people bpb pradiptaray
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to msa phylogeny by marti on 2008-08-07 15:16:49 as along with 28 people and 3 groups operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	An evaluation of automated homology modelling methods at low target template sequence similarity [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1901-1908. by James A. Dalton, Richard M. Jackson posted to homology-modelling msa by marti on 2008-08-07 15:13:47 as along with 5 people cdeane chad_davis biehl neils pansapiens
	Model-based prediction of sequence alignment quality [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2165-2171. by Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa Uusipaikka posted to msa by marck on 2008-08-06 07:21:25 as along with 3 people druvus treangen nuin
	NcDNAlign: Plausible multiple alignments of non-protein-coding genomic sequences. [My Copy] Genomics (27 May 2008) by Dominic Rose, Jana Hertel, Kristin Reiche, Peter F. F. Stadler, Jörg Hackermüller posted to alignment methods msa tools by aprasad on 2008-07-30 16:16:50 as along with 1 person maximilianh
	Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 14. (22 September 2004), pp. 2317-2319. by T. Huber, G. Faulkner, P. Hugenholtz posted to chromosome metagenomics msa by djkt on 2008-07-24 18:12:09 as along with 2 people and 1 group esyoun mcox iSEEM
	Spatial and temporal heterogeneity in nucleotide sequence evolution. [My Copy] Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1683-1694. by S. Whelan posted to conservation evolution molclock msa by djkt on 2008-07-18 21:05:56 as
	Protein multiple sequence alignment. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 484 (2008), pp. 379-413. by C. B. Do, K. Katoh posted to msa by marck on 2008-07-03 10:58:56 as
	Multiple DNA and protein sequence alignment based on segment-to-segment comparison [My Copy] Proceedings of the National Academy of Sciences, Vol. 93, No. 22. (29 October 1996), pp. 12098-12103. by Burkhard Morgenstern, Andreas Dress, Thomas Werner posted to alignment msa by newton1234 on 2008-06-25 17:11:36 as along with 3 people BioNica adijr gjuggler
	Multiple protein sequence alignment [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Jimin Pei posted to msa by marck on 2008-06-22 08:55:46 as along with 6 people and 1 group robfsouza agustinarce zwang TOchi paulschlesinger sobolevnrm baker-group
	PROMALS: towards accurate multiple sequence alignments of distantly related proteins [My Copy] Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 802-808. by Pei, Jimin, Grishin, V. Nick posted to alignment msa by newton1234 on 2008-06-17 23:16:16 as along with 1 person hplatero
	HOMSTRAD: a database of protein structure alignments for homologous families. [My Copy] Protein Sci., Vol. 7, No. 11. (November 1998), pp. 2469-2471. by K. Mizuguchi, C. M. Deane, T. L. Blundell, J. P. Overington posted to alignment msa by newton1234 on 2008-06-17 23:13:01 as along with 8 people semin viktor21614 bicko chrn massivemayhem medic0747 cdeane sebk
	BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs [My Copy] Bioinformatics, Vol. 15, No. 1. (1 January 1999), pp. 87-88. by Jd Thompson, F. Plewniak, O. Poch posted to alignment msa by newton1234 on 2008-06-17 23:10:26 as along with 3 people taguchi yylin BioNica
	A novel randomized iterative strategy for aligning multiple protein sequences. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 7, No. 4. (October 1991), pp. 479-484. by M. P. Berger, P. J. Munson posted to alignment msa by newton1234 on 2008-06-17 21:25:22 as
	ProbCons: Probabilistic consistency-based multiple sequence alignment. [My Copy] Genome Res., Vol. 15, No. 2. (February 2005), pp. 330-340. by C. B. Do, M. S. Mahabhashyam, M. Brudno, S. Batzoglou posted to alignment msa by newton1234 on 2008-06-17 21:24:26 as along with 7 people and 1 group BioNica bpb radek balajis stajich olympos gjuggler Mycology
	SAGA: sequence alignment by genetic algorithm. [My Copy] Nucleic Acids Res., Vol. 24, No. 8. (15 April 1996), pp. 1515-1524. by C. Notredame, D. G. Higgins posted to alignment msa by newton1234 on 2008-06-17 21:23:30 as
	Simulated annealing algorithm for the multiple sequence alignment problem: the approach of polymers in a random medium. [My Copy] Phys. Rev. E, Vol. 72, No. 3 Pt 1. (September 2005), 031915. by M. Hernández-Guía, R. Mulet, S. Rodríguez-Pérez posted to alignment msa by newton1234 on 2008-06-17 21:22:43 as

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alignment	58
evolution	25
conservation	13
selection	9
genome	8
multiple	8
phylogenetics	8
sequence	8
expression	7
review	7
acceleration	6
synuclein	6
bioinformatics	5
diagnosis	5
primates	5
tools	5
algorithm	4
casp8	4
hmm	4
pd	4
proteins	4
rna	4
rodents	4
indel	3
method	3
methods	3
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secondary	3
structure	3
alignments	2
amino-acid-propensities	2
analysis	2
annotation	2
arrays	2
autonomic	2
bp	2
chromosome	2
comparison	2
dialign	2
dna-binding	2
duplication	2
genomic	2
geometric-hashing	2
homing-endonuclease	2
molclock	2
motifs	2
mri	2
multiz	2
ncrna	2
oxbench	2
parkinsons	2
pattern	2
popgen	2
secondary-structure	2
server	2
simulation	2
software	2
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ad-hoc	1
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allosteric	1
als	1
application	1
bmc_bioinfo	1
change	1
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clustalw	1
commentary	1
comparative_genomics	1
correlated-mutation	1
dialign-t	1
domain-classification	1
f-dopa	1
fdg	1
fragmentation	1
gapped	1
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graph-theory	1
link	1
long_branch_attraction	1
machine-learning	1
mobile	1
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motif	1
nar	1
network	1
options	1
phylogeny	1
physiology	1
policy	1
postural	1
protected	1
protein-structure	1
regulatory	1
sbma	1
sv	1
text	1
tf	1

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