Tag multiscale [at least 200 articles] Export

Recent papers classified by the tag multiscale.

	Breaking the Cloud Parameterization Deadlock [My Copy] Bulletin of the American Meteorological Society, Vol. 84, No. 11. (1 November 2003), pp. 1547-1564. by David Randall, Marat Khairoutdinov, Akio Arakawa, Wojciech Grabowski posted to superparameterization multiscale model cloud climate by nurban on 2009-11-13 12:43:10 as
	Multiscale characterization of protein conformational ensembles [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2009), pp. 837-851. by Amarda Shehu, Lydia E. Kavraki, Cecilia Clementi posted to sampling_method multiscale energylandscape dynamics conformational_flexibility by anuragsethi on 2009-11-13 03:53:14 as along with 4 people and 3 groups okapi barry sobolevnrm apaydin structural_bioinformatics McCammon baker-group
	Some Critical Issues for the "Equation-Free" Approach to Multiscale Modeling [My Copy] (10 Jun 2008) by E. Weinan, Eric Vanden-Eijnden posted to numerical multiscale error by nurban on 2009-11-11 17:35:38 as
	Gene regulatory networks: A coarse-grained, equation-free approach to multiscale computation [My Copy] The Journal of Chemical Physics, Vol. 124, No. 8. (2006), 084106. by Radek Erban, Ioannis G. Kevrekidis, David Adalsteinsson, Timothy C. Elston posted to regulatory_network multiscale gene_expression equation-free by Borelli on 2009-11-11 17:12:17 as along with 1 person nurban
	Equation-Free Multiscale Computation: Algorithms and Applications [My Copy] Annual Review of Physical Chemistry, Vol. 60, No. 1. (2009), pp. 321-344. by Ioannis G. Kevrekidis, Giovanni Samaey posted to review multiscale equation-free by Borelli on 2009-11-11 17:11:07 as along with 2 people and 1 group nurban sobolevnrm baker-group
	Deciding the Nature of the Coarse Equation through Microscopic Simulations: The Baby-Bathwater Scheme [My Copy] SIAM Review, Vol. 49, No. 3. (2007), pp. 469-487. by Ju Li, Panayotis G. Kevrekidis, William C. Gear, Ioannis G. Kevrekidis posted to numerical multiscale by nurban on 2009-11-11 15:40:22 as along with 1 person elm
	Equation-free: The computer-aided analysis of complex multiscale systems [My Copy] AIChE Journal, Vol. 50, No. 7. (2004), pp. 1346-1355. by Ioannis G. Kevrekidis, C. William Gear, Gerhard Hummer posted to numerical multiscale by nurban on 2009-11-11 15:37:12 as along with 2 people ddahlem Bc91
	An equation-free, multiscale approach to uncertainty quantification [My Copy] Computing in Science & Engineering, Vol. 7, No. 3. (02 May 2005), pp. 16-23. by Dongbin Xiu, I. G. Kevrekidis, R. Ghanem posted to uncertainty sensitivity numerical multiscale by nurban on 2009-11-11 15:35:30 as along with 1 person ddahlem
	A general strategy for designing seamless multiscale methods [My Copy] J. Comput. Phys., Vol. 228, No. 15. (04 May 2009), pp. 5437-5453. by E. Weinan, Weiqing Ren, Eric V. Eijnden posted to numerical multiscale model dynamics circulation by nurban on 2009-11-11 15:27:32 as
	Multi-scale characterization of the energy landscape of proteins with application to the C3D/Efb-C complex [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Nurit Haspel, Brian V. Geisbrecht, John Lambris, Lydia Kavraki posted to multiscale energy_landscape by apaydin on 2009-11-08 08:16:51 as
	Membrane Remodeling from N-BAR Domain Interactions: Insights from Multi-Scale Simulation [My Copy] Biophysical Journal, Vol. 92, No. 10. (15 May 2007), pp. 3595-3602. by G. Ayton, P. Blood, G. Voth posted to protein multiscale membrane bar-domain by dsmueller on 2009-11-05 14:41:56 as along with 1 person choonpeng
	Paddling mechanism for the substrate translocation by AAA+ motor revealed by multiscale molecular simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 43. (27 October 2009), pp. 18237-18242. by Nobuyasu Koga, Tomoshi Kameda, Kei-ichi Okazaki, Shoji Takada posted to simulation multiscale by okapi on 2009-11-04 08:39:29 as
	Coarse-grained modeling of allosteric regulation in protein receptors [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14253-14258. by Ilya A. Balabin, Weitao Yang, David N. Beratan posted to protein-ligand_interactions multiscale allostery by sobolevnrm on 2009-10-31 00:13:58 as along with 4 people and 1 group pmung jmccammon agrossfield okapi McCammon
	Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion [My Copy] The Journal of Chemical Physics, Vol. 131, No. 7. (2009), 074112. by Joseph N. Stember, Willy Wriggers posted to quasiharmonic_models multiscale by sobolevnrm on 2009-10-27 11:45:35 as along with 2 people anuragsethi agrossfield
	Multiscale simulation of soft matter systems - from the atomistic to the coarse-grained level and back [My Copy] Soft Matter, Vol. 5, No. 22. (2009), pp. 4357-4366. by Christine Peter, Kurt Kremer posted to review multiscale molecular_simulation by sobolevnrm on 2009-10-17 01:33:54 as along with 2 people flbarroso anuragsethi
	Experimental verification of lipid bilayer structure through multi-scale modeling [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1788, No. 10. (17 October 2009), pp. 2284-2290. by Jason D. Perlmutter, Jonathan N. Sachs posted to multiscale molecular_simulation biomembranes by sobolevnrm on 2009-10-12 12:40:22 as
	Systematic coarse graining from structure using internal states: Application to phospholipid/cholesterol bilayer [My Copy] The Journal of Chemical Physics, Vol. 131, No. 5. (2009), 055101. by Teemu Murtola, Mikko Karttunen, Ilpo Vattulainen posted to sterols multiscale molecular_simulation biomembranes by sobolevnrm on 2009-10-07 12:45:28 as along with 3 people anuragsethi cjryan agrossfield
	Perturbation-based Markovian Transmission Model for Probing Allosteric Dynamics of Large Macromolecular Assembling: A Study of GroEL-GroES [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (2 October 2009), e1000526. by Hsiao-Mei Lu, Jie Liang posted to multiscale allostery by sobolevnrm on 2009-10-07 12:45:06 as along with 1 person barry
	Intrinsic Multiscale Structure and Dynamics in Complex Electronic Oxides : proceedings of the Workshop, Abdus Salam International Centre for Theoretical Physics, Trieste, Italy, 1 - 4 July 2002 [My Copy] (2003) by A. R. Bishop, S. R. Shenoy, S. Sridhar, Workshop on Intrinsic Multiscale Structure and Dynmaics in Complex Electronic Oxides posted to separation polarons phase multiscale by polarons on 2009-10-05 08:21:53 as
	Stripes and related phenomena [My Copy] (2000) by A. Bianconi, N. L. Saini posted to separation polarons phase multiscale by polarons on 2009-10-05 08:14:56 as
	Coupling subdomains with heterogeneous time integrators and incompatible time steps [My Copy] Computational Mechanics, Vol. 44, No. 6. (1 November 2009), pp. 825-843. by Najib Mahjoubi, Anthony Gravouil, Alain Combescure posted to time-integration parallelization multiscale dynamics domain_decomposition_methods by umbertoperego on 2009-10-01 14:58:47 as
	Multiscale Modeling of Proteins [My Copy] Accounts of Chemical Research, Vol. 0, No. 0. (0000) by Valentina Tozzini posted to tossini09pdf protein multiscale modeling by paulschlesinger on 2009-09-29 00:42:44 as along with 2 people tomweingarten qshao
	Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 9. (8 September 2009), pp. 2531-2543. by Xavier Periole, Marco Cavalli, Siewert-Jan Marrink, Marco A. Ceruso posted to multiscale by okapi on 2009-09-26 16:01:36 as along with 3 people and 2 groups TonyIvetac pmung A_Coletta_Thesis McCammon Structural Biology Group TorVergata
	Post-Processing Hierarchical Community Structures: Quality Improvements and Multi-scale View [My Copy] (9 Aug 2006) by Pascal Pons posted to multiscale modularity community by AaronMcDaid on 2009-09-16 18:43:17 as
	RedMD - Reduced molecular dynamics package [My Copy] Journal of Computational Chemistry, Vol. 30, No. 14. (2009), pp. 2364-2373. by Adam Górecki, Marcin Szypowski, Maciej D&lstrok;ugosz, Joanna Trylska posted to multiscale dynamics brownian_dynamics by anuragsethi on 2009-09-16 14:23:36 as along with 4 people and 1 group oteri flbarroso jmccammon shwu McCammon
	Stochastic parametrization of multiscale processes using a dual-grid approach [My Copy] Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 366, No. 1875. (28 July 2008), pp. 2623-2639. by Glenn Shutts, Thomas Allen, Judith Berner posted to weather stochastic parameterization multiscale model emulator climate by nurban on 2009-09-15 19:43:52 as
	A Multiscale Modeling System: Developments, Applications, and Critical Issues [My Copy] Bulletin of the American Meteorological Society, Vol. 90, No. 4. (1 April 2009), pp. 515-534. by Wei-Kuo Tao, Jiun-Dar Chern, Robert Atlas, et al.David Randall, Marat Khairoutdinov, Jui-Lin Li, Duane E. Waliser, Arthur Hou, Xin Lin, Christa Peters-Lidard, William Lau, Jonathan Jiang, Joanne Simpson posted to superparameterization multiscale model cloud climate by nurban on 2009-09-15 16:46:25 as
	Multiscale Models with Moisture and Systematic Strategies for Superparameterization [My Copy] Journal of the Atmospheric Sciences, Vol. 64, No. 7. (1 July 2007), pp. 2726-2734. by Andrew J. Majda posted to weather superparameterization prediction multiscale model cloud climate by nurban on 2009-09-10 21:53:53 as
	Morphogenesis by coupled regulatory networks: Reliable control of positional information and proportion regulation [My Copy] Journal of Theoretical Biology (25 Aug 2009) by Thimo Rohlf, Stefan Bornholdt posted to spatial pattern_formation multiscale gene_regulation eukaryote development agent_based by jjray on 2009-08-26 15:39:18 as along with 2 people sigoldberg1 apocapoc
	A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules [My Copy] Biophysical Journal, Vol. 95, No. 11. (01 December 2008), pp. 5073-5083. by Z. Zhang, L. Lu, W. Noid, V. Krishna, J. Pfaendtner, G. Voth posted to multiscale by okapi on 2009-08-22 15:54:12 as along with 5 people and 2 groups barry sobolevnrm choonpeng agrossfield paulschlesinger structural_bioinformatics McCammon
	The multiscale coarse-graining method. III. A test of pairwise additivity of the coarse-grained potential and of new basis functions for the variational calculation [My Copy] The Journal of Chemical Physics, Vol. 131, No. 3. (2009), 034102. by Avisek Das, Hans C. Andersen posted to statistical_mechanics solvation nonpolar multiscale by sobolevnrm on 2009-08-19 12:55:48 as along with 3 people tomweingarten dlimmer agrossfield
	Solving the equations of motion for mixed atomistic and coarse-grained systems [My Copy] Molecular Simulation, Vol. 35, No. 10. (2009), pp. 962-973. by Jong H. Park, Andreas Heyden posted to multiscale molecular_simulation by sobolevnrm on 2009-08-18 12:37:18 as along with 1 person flbarroso
	A rigorous framework for multiscale simulation of stochastic cellular networks [My Copy] The Journal of Chemical Physics, Vol. 131, No. 5. (2009), 054102. by Michael W. Chevalier, Hana E. Samad posted to stochastic simulation network multiscale method biochemistry by jjray on 2009-08-13 22:27:08 as along with 1 person cjryan
	The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures [My Copy] The Journal of Chemical Physics, Vol. 131, No. 2. (2009), 024103. by Vinod Krishna, Will G. Noid, Gregory A. Voth posted to mathematics multiscale statistical_mechanics by sobolevnrm on 2009-08-10 13:01:50 as along with 2 people tomweingarten agrossfield
	Nucleotide-dependent conformational states of actin [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 31. (4 August 2009), pp. 12723-12728. by Jim Pfaendtner, Davide Branduardi, Michele Parrinello, Thomas D. Pollard, Gregory A. Voth posted to allostery dynamics freeenergy function ligandbinding multiscale by anuragsethi on 2009-08-08 18:13:15 as along with 3 people and 2 groups pmung okapi barry structural_bioinformatics McCammon
	Adiabatic coarse-graining and simulations of stochastic biochemical networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 26. (30 June 2009), pp. 10546-10551. by N. A. Sinitsyn, Nicolas Hengartner, Ilya Nemenman posted to kinetics multiscale by sobolevnrm on 2009-07-23 13:10:28 as along with 4 people cjryan Scis0000002 kevinchannon jjray
	Multiscale mobility networks and the large scale spreading of infectious diseases [My Copy] (20 Jul 2009) by Duygu Balcan, Vittoria Colizza, Bruno Goncalves, Hao Hu, Jose J. Ramasco, Alessandro Vespignani posted to airline airport epidemics graph mobility multiscale network spreading by marinari on 2009-07-22 11:24:31 as along with 3 people Bolozna yonyoni apocapoc
	A quantitative scale-setting approach for building multi-scale spatial databases [My Copy] Computers & Geosciences (11 June 2009) by Changxiu Cheng, Feng Lu, Jun Cai posted to data database multilevel multiscale scale by ianturton on 2009-07-21 22:30:34 as
	From signal transduction to spatial pattern formation in E. coli: A paradigm for multiscale modeling in biology [My Copy] Multiscale Modeling & Simulation, Vol. 3, No. 2. (2005), pp. 362-394. by Radek Erban, Hans G. Othmer posted to keller-segel multiscale by vladimirov on 2009-07-06 12:50:35 as
	A systems-based approach to multiscale computation: Equation-free detection of coarse-grained bifurcations [My Copy] Computers & Chemical Engineering, Vol. 30, No. 10-12. (12 September 2006), pp. 1632-1642. by C. Siettos, R. Ricomartinez, I. Kevrekidis posted to equationfree multiscale systems by mathen on 2009-07-03 19:10:58 as
	Preprocessing of region of interest localization based on local surface curvature analysis for three-dimensional reconstruction with multiresolution [My Copy] Optical Engineering, Vol. 48, No. 6. (2009), 067203. by Wanjing Li, Rainer Schütze, Martin Böhler, Frank Boochs, Franck S. Marzani, Yvon Voisin posted to 3-d multiscale reconstruction by pick600 on 2009-07-02 11:36:30 as
	Multiscale enrichment based on partition of unity [My Copy] International Journal for Numerical Methods in Engineering, Vol. 62, No. 10. (2005), pp. 1341-1359. by Jacob Fish, Zheng Yuan posted to mepu multiscale by mathen on 2009-07-01 12:40:37 as
	Variational multiscale methods to embed the macromechanical continuum formulation with fine-scale strain gradient theories [My Copy] International Journal for Numerical Methods in Engineering, Vol. 57, No. 9. (2003), pp. 1283-1298. by K. Garikipati posted to mechanics multiscale variational by mathen on 2009-07-01 12:00:37 as
	Rheological properties of polymer melt between rapidly oscillating plates: An application of multiscale modeling [My Copy] EPL (Europhysics Letters), Vol. 86, No. 1. (2009), 18002. by S. Yasuda, R. Yamamoto posted to multiscale rheology shear simulation softmatter by kkims on 2009-07-01 06:35:42 as
	The contourlet transform: an efficient directional multiresolution image representation [My Copy] Image Processing, IEEE Transactions on In Image Processing, IEEE Transactions on, Vol. 14, No. 12. (2005), pp. 2091-2106. by M. N. Do, M. Vetterli posted to analysis image multiscale by pantherseu on 2009-06-28 09:46:53 as along with 1 person jorgevictorino
	Hierarchical model reduction at multiple scales [My Copy] International Journal for Numerical Methods in Engineering, Vol. 79, No. 3. (2009), pp. 314-339. by Zheng Yuan, Jacob Fish posted to hirearchichal model multiscale reduction by mathen on 2009-06-26 13:14:29 as
	Self-learning multiscale simulation for achieving high accuracy and high efficiency simultaneously [My Copy] The Journal of Chemical Physics, Vol. 130, No. 21. (2009), 214108. by Wenfei Li, Shoji Takada posted to molecular_simulation multiscale by sobolevnrm on 2009-06-24 12:21:39 as
	Mathematical test models for superparametrization in anisotropic turbulence [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 14. (7 April 2009), pp. 5470-5474. by Andrew J. Majda, Marcus J. Grote posted to weather turbulence superparameterization stochastic spectral nonlinear multiscale emulator dynamics climate by nurban on 2009-06-22 23:02:58 as
	Multiscale Representations for Manifold-Valued Data [My Copy] Multiscale Modeling & Simulation, Vol. 4, No. 4. (2005), pp. 1201-1232. by Inam U. Rahman, Iddo Drori, Victoria C. Stodden, David L. Donoho, Peter Schroder posted to manifold multi-output multiscale by baldazen on 2009-06-22 12:19:38 as along with 3 people jzujovic bigbossman flavian_vasile
	Coarse-grained modeling of lipids [My Copy] Chemistry and Physics of Lipids, Vol. 159, No. 2. (02 June 2009), pp. 59-66. by Sandra V. Bennun, Matthew I. Hoopes, Chenyue Xing, Roland Faller posted to biomembranes multiscale review by sobolevnrm on 2009-06-12 12:57:16 as along with 3 people edws flbarroso paulschlesinger

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