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Tag multiscale [180 articles]

Recent papers classified by the tag multiscale.
  • Medical image registration with partial data
    Medical Image Analysis, Vol. 10, No. 3. (June 2006), pp. 452-464.
    by Senthil Periaswamy, Hany Farid
    posted to multiscale registration robust by xtizon on 2006-06-01 13:29:59 as **** along with 1 person decraene
  • Multiscale Joint Segmentation and Registration of Image Morphology
    Transactions on Pattern Analysis and Machine Intelligence, Vol. 29, No. 12. (2007), pp. 2181-2194.
    by Marc Droske, Martin Rumpf
    posted to medical-imaging multiscale segmentation by xtizon on 2007-12-05 22:14:59 as *** along with 1 person ooi
  • Multiscale variety in complex systems: Research Articles
    Complex., Vol. 9, No. 4. (March 2004), pp. 37-45.
    by Yaneer Bar-Yam
    posted to multiscale variety complex_system by VRadenovic on 2007-05-10 01:22:41 as *** along with 1 group DSTO-CAS
  • notes Multiscale planning and scheduling in the secondary pharmaceutical industry
    AIChE Journal, Vol. 52, No. 12. (2006), pp. 4133-4149.
    by Hlynur Stefansson, Nilay Shah, Pall Jensson
    posted to c2 multiscale by VRadenovic on 2007-09-04 01:43:51 as ** along with 1 group DSTO-CAS
  • Motion detection using a multi-scale image representation strategy
    Intelligent Robots and Systems '93, IROS '93. Proceedings of the 1993 IEEE/RSJ International Conference on, Vol. 1 (1993), pp. 261-266 vol.1.
    by T Skordas, S de Paoli, E Degremont, A Chehikian
    posted to detection motion multiscale multi-scale segmentation by tyler on 2007-11-02 10:22:17 as *****
  • Adaptive configuration fields: a new multiscale simulation technique for reptation-based models with a stochastic strain measure and local variations of life span distribution
    Journal of Non-Newtonian Fluid Mechanics, Vol. 108, No. 1-3. (30 December 2002), pp. 99-122.
    by Piyush G Gigras, Bamin Khomami
    posted to multiscale by takamujp on 2007-04-23 10:11:03 as ***
  • Beyond-equilibrium molecular dynamics of a rarefied gas subjected to shear flow
    Journal of Non-Newtonian Fluid Mechanics, Vol. 120, No. 1-3. (1 July 2004), pp. 175-187.
    by Martin Kroger, Hans C Ottinger
    posted to multiscale by takamujp on 2007-04-23 10:13:57 as ***
  • Multiscale fluid transport theory for swelling biopolymers
    Chemical Engineering Science, Vol. 58, No. 11. (June 2003), pp. 2409-2419.
    by Pawan P Singh, John H Cushman, Dirk E Maier
    posted to multiscale by takamujp on 2007-04-23 11:28:19 as ***
  • An efficient algorithm for multiscale flow simulation of dilute polymeric solutions using bead-spring chains
    Journal of Non-Newtonian Fluid Mechanics, Vol. 141, No. 2-3. (15 February 2007), pp. 180-192.
    by Anantha P Koppol, Radhakrishna Sureshkumar, Bamin Khomami
    posted to multiscale by takamujp on 2007-04-23 06:02:24 as ***
  • Calculation of viscoelastic flow using molecular models: the connffessit approach
    Journal of Non-Newtonian Fluid Mechanics, Vol. 47 (June 1993), pp. 1-20.
    by M Laso, HC Ottinger
    posted to multiscale by takamujp on 2007-04-23 10:34:19 as ***
  • Analysis of how thermal aging affects the long-term mechanical behavior and strength of polymer-matrix composites
    Composites Science and Technology, Vol. 65, No. 3-4. (March 2005), pp. 395-401.
    by David Leveque, Anne Schieffer, Anne Mavel, Jean-Francois Maire
    posted to multiscale by takamujp on 2007-04-23 11:26:24 as ***
  • A finite element thermo-viscoelastic creep approach for heterogeneous structures with dissipative correctors
    Finite Elements in Analysis and Design, Vol. 36, No. 3-4. (1 November 2000), pp. 279-313.
    by Peter W Chung, Kumar K Tamma, Raju R Namburu
    posted to multiscale by takamujp on 2007-04-23 11:31:15 as ***
  • A new multiscale modeling approach for the prediction of mechanical properties of polymer-based nanomaterials
    Polymer, Vol. 47, No. 26. (8 December 2006), pp. 8604-8617.
    by Stephan A Baeurle, Takao Usami, Andrei A Gusev
    posted to multiscale by takamujp on 2007-04-23 11:22:22 as ***
  • An improved algorithm for simulating three-dimensional, viscoelastic turbulence
    Journal of Non-Newtonian Fluid Mechanics, Vol. 140, No. 1-3. (30 December 2006), pp. 3-22.
    by T Vaithianathan, Ashish Robert, James G Brasseur, Lance R Collins
    posted to multiscale by takamujp on 2007-04-23 11:51:57 as ***
  • A multiscale model of plasticity
    International Journal of Plasticity, Vol. 18, No. 9. (September 2002), pp. 1133-1163.
    by Hussein M Zbib, Diaz
    posted to multiscale by takamujp on 2007-04-23 06:37:11 as ***
  • Multiscale modeling for polymer systems of industrial interest
    Progress in Organic Coatings, Vol. 58, No. 2-3. (1 February 2007), pp. 187-199.
    by Maurizio Fermeglia, Sabrina Pricl
    posted to multiscale by takamujp on 2007-04-23 06:00:56 as ***
  • Multiscale modelling of plastic flow localization in irradiated materials
    Nature, Vol. 406, No. 6798. (2000), pp. 871-874.
    by Diaz, Hussein M Zbib, Tariq A Khraishi, Brian D Wirth, Max Victoria, Maria J Caturla
    posted to multiscale by takamujp on 2007-04-23 06:35:49 as ***
  • Fully-developed pipe and planar flows of multimode viscoelastic fluids
    Journal of Non-Newtonian Fluid Mechanics, Vol. 141, No. 2-3. (15 February 2007), pp. 85-98.
    by DOA Cruz, FT Pinho
    posted to multiscale by takamujp on 2007-04-23 11:54:29 as ***
  • Flow-induced nonequilibrium thermodynamics of lamellar semicrystalline polymers
    Journal of Non-Newtonian Fluid Mechanics, Vol. 120, No. 1-3. (1 July 2004), pp. 225-240.
    by Joydeep Mukherjee, Stevan Wilson, Antony N Beris
    posted to multiscale by takamujp on 2007-04-23 10:12:39 as ***
  • Multiscale simulation of viscoelastic free surface flows
    Journal of Non-Newtonian Fluid Mechanics, Vol. 140, No. 1-3. (30 December 2006), pp. 87-107.
    by Mohit Bajaj, Pradeep P Bhat, Ravi, Matteo Pasquali
    posted to multiscale by takamujp on 2007-04-23 06:03:10 as ***
  • Bidirectional mapping between self-consistent field theory and molecular dynamics: Application to immiscible homopolymer blends
    The Journal of Chemical Physics, Vol. 127, No. 14. (2007)
    by Thomas D Sewell, Kim, Dmitry Bedrov, Grant D Smith, Russell B Thompson
    posted to molecular_simulation multiscale by sobolevnrm on 2007-10-22 12:50:12 as read along with 1 group baker-group
  • The MARTINI Coarse-Grained Force Field: Extension to Proteins
    J. Chem. Theory Comput. (16 April 2008)
    by Luca Monticelli, Senthil K Kandasamy, Xavier Periole, Ronald G Larson, Peter D Tieleman, Siewert-Jan Marrink
    posted to biomembranes molecular_dynamics multiscale by sobolevnrm on 2008-05-19 11:39:48 as read along with 6 people and 2 groups Marine middledomain Ema aqeel DanielParton softsimu Molecular dynamics in MSU baker-group
  • Toward the description of electrostatic interactions between globular proteins: Potential of mean force in the primitive model
    The Journal of Chemical Physics, Vol. 127, No. 9. (2007)
    by Vincent Dahirel, Marie Jardat, Jean F Dufrêche, Pierre Turq
    posted to electrostatics multiscale solvation by sobolevnrm on 2007-09-07 12:57:47 as read along with 1 group baker-group
  • Coarse-Grained Biomolecular Simulation with REACH: Realistic Extension Algorithm via Covariance Hessian
    Biophys. J., Vol. 93, No. 10. (15 November 2007), pp. 3460-3469.
    by Kei Moritsugu, Jeremy C Smith
    posted to enhanced_sampling molecular_simulation multiscale quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2007-11-01 11:59:51 as read along with 3 people and 1 group aqeel hmk choonpeng baker-group
  • Coarse-Grained Protein Model Coupled with a Coarse-Grained Water Model: Molecular Dynamics Study of Polyalanine-Based Peptides
    J. Chem. Theory Comput. (2 October 2007)
    by W Han, YD Wu
    posted to molecular_simulation multiscale protein_folding by sobolevnrm on 2007-10-08 12:22:48 as read along with 1 group baker-group
  • Langevin dynamics of molecules with internal rigid fragments in the harmonic regime
    The Journal of Chemical Physics, Vol. 127, No. 10. (2007)
    by Sebnem G Essiz, Rob D Coalson
    posted to diffusion molecular_simulation multiscale quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2007-09-20 16:53:16 as read along with 1 group baker-group
  • Connecting Atomistic-to-Continuum Coupling and Domain Decomposition
    Multiscale Modeling & Simulation, Vol. 7, No. 1. (2008), pp. 362-380.
    by Michael L Parks, Pavel B Bochev, Richard B Lehoucq
    posted to mathematics mechanics multiscale by sobolevnrm on 2008-06-16 12:19:46 as read along with 1 group baker-group
  • Conservative Algorithm for an Adaptive Change of Resolution in Mixed Atomistic/Coarse-Grained Multiscale Simulations
    J. Chem. Theory Comput., Vol. 4, No. 2. (12 February 2008), pp. 217-221.
    by A Heyden, DG Truhlar
    posted to molecular_simulation multiscale by sobolevnrm on 2008-02-27 12:18:27 as read along with 1 group baker-group
  • A Quantitative Coarse-Grain Model for Lipid Bilayers
    J. Phys. Chem. B, Vol. 112, No. 3. (24 January 2008), pp. 802-815.
    by M Orsi, DY Haubertin, WE Sanderson, JW Essex
    posted to biomembranes multiscale by sobolevnrm on 2008-01-25 12:57:48 as read along with 2 people and 1 group paulschlesinger softsimu baker-group
  • Normal mode partitioning of Langevin dynamics for biomolecules
    The Journal of Chemical Physics, Vol. 128, No. 14. (2008)
    by Christopher R Sweet, Paula Petrone, Vijay S Pande, Jesús A Izaguirre
    posted to molecular_dynamics multiscale quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2008-05-12 11:53:54 as read along with 2 people and 1 group paulschlesinger aqeel baker-group
  • Coarse-Grained Free Energy Functions for Studying Protein Conformational Changes: A Double-Well Network Model
    Biophys. J., Vol. 93, No. 11. (1 December 2007), pp. 3860-3871.
    by Jhih-Wei Chu, Gregory A Voth
    posted to allostery molecular_simulation multiscale quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2007-11-16 00:47:06 as read along with 1 person and 1 group jlh64 baker-group
  • Coarse-grained models of protein folding: toy models or predictive tools?
    Curr Opin Struct Biol (19 December 2007)
    by Cecilia Clementi
    posted to molecular_dynamics molecular_simulation multiscale by sobolevnrm on 2008-01-30 12:46:07 as read along with 2 people and 1 group choonpeng nh baker-group
  • Modeling diffusive dynamics in adaptive resolution simulation of liquid water
    The Journal of Chemical Physics, Vol. 128, No. 2. (2008)
    by Silvina Matysiak, Cecilia Clementi, Matej Praprotnik, Kurt Kremer, Luigi Delle Site
    posted to diffusion kinetics multiscale solvation by sobolevnrm on 2008-02-18 12:34:36 as read along with 1 group baker-group
  • Coarse-Graining the Accessible Surface and the Electrostatics of Proteins for Protein-Protein Interactions
    J. Chem. Theory Comput. (24 August 2007)
    by F Pizzitutti, M Marchi, D Borgis
    posted to electrostatics multiscale solvation by sobolevnrm on 2007-08-27 12:22:06 as read along with 1 group baker-group
  • A mathematical tool for exploring the dynamics of biological networks
    Proceedings of the National Academy of Sciences (21 November 2007), 0709955104.
    by Paolo E Barbano, Marina Spivak, Marc Flajolet, Angus C Nairn, Paul Greengard, Leslie Greengard
    posted to mathematics multiscale systems_biology by sobolevnrm on 2008-01-10 12:32:48 as read along with 9 people and 1 group tmmurali cjeans zwang cactus forgoston lenov sdbneuro mdramirez phoenixzxl baker-group
  • Hybrid Hamiltonian replica exchange molecular dynamics simulation method employing the Poisson--Boltzmann model
    The Journal of Chemical Physics, Vol. 127, No. 8. (2007)
    by Yuguang Mu, Ye Yang, Weixin Xu
    posted to electrostatics multiscale solvation by sobolevnrm on 2007-09-04 12:38:17 as read along with 1 group baker-group
  • Phase separation of saturated and mono-unsaturated lipids as determined from a microscopic model
    The Journal of Chemical Physics, Vol. 122, No. 4. (2005)
    by R Elliott, K Katsov, M Schick, I Szleifer
    posted to biomembranes multiscale statistical_mechanics by sobolevnrm on 2008-01-28 12:51:48 as read along with 1 person and 1 group paulschlesinger baker-group
  • Physics in the cell: Spring theory
    Nature, Vol. 448, No. 7157. (2007), pp. 984-986.
    by Brendan Maher
    posted to multiscale nucleic_acids by sobolevnrm on 2007-08-30 12:13:45 as read along with 1 group baker-group
  • Unique elastic properties of the spectrin tetramer as revealed by multiscale coarse-grained modeling.
    Proc Natl Acad Sci U S A (17 January 2008)
    by Dina T T Mirijanian, Gregory A A Voth
    posted to cytoskeleton molecular_simulation multiscale by sobolevnrm on 2008-02-27 12:31:09 as read along with 1 person and 1 group choonpeng baker-group
  • Adaptive finite element approximation of multiphysics problems
    Communications in Numerical Methods in Engineering, Vol. 9999, No. 9999. (2007), n/a.
    by Mats G Larson, Fredrik Bengzon
    posted to mathematics multiscale by sobolevnrm on 2008-01-30 12:31:17 as read along with 1 group baker-group
  • Variable-free exploration of stochastic models: a gene regulatory network example
    (6 Nov 2006)
    by Radek Erban, Thomas A Frewen, Xiao Wang, Timothy C Elston, Ronald Coifman, Boaz Nadler, Ioannis G Kevrekidis
    posted to kinetics multiscale systems_biology by sobolevnrm on 2008-02-01 21:23:37 as ***** along with 1 person and 1 group j_vinals baker-group
  • Automated Generation of Reduced Stochastic Weather Models I: Simultaneous Dimension and Model Reduction for Time Series Analysis
    Multiscale Modeling & Simulation, Vol. 6, No. 4. (2008), pp. 1125-1145.
    by Illia Horenko, Rupert Klein, Stamen Dolaptchiev, Christof Schütte
    posted to kinetics multiscale quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2008-02-15 12:41:45 as read along with 1 person and 1 group nurban baker-group
  • Combining Elastic Network Analysis and Molecular Dynamics Simulations by Hamiltonian Replica Exchange
    J. Chem. Theory Comput., Vol. 4, No. 3. (11 March 2008), pp. 477-487.
    by M Zacharias
    posted to molecular_dynamics molecular_simulation multiscale quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2008-03-14 11:18:27 as read along with 1 person and 1 group barry baker-group
  • Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly
    Structure, Vol. 16, No. 4. (8 April 2008), pp. 621-630.
    by Kathryn A Scott, Peter J Bond, Anthony Ivetac, Alan P Chetwynd, Syma Khalid, Mark S Sansom
    posted to biomembranes ion_channels multiscale by sobolevnrm on 2008-05-14 12:02:44 as read along with 2 people and 1 group choonpeng sebk baker-group
  • notes Coarse Master Equations for Peptide Folding Dynamics
    J. Phys. Chem. B (31 January 2008)
    by NV Buchete, G Hummer
    posted to kinetics multiscale protein_folding by sobolevnrm on 2008-02-29 12:18:27 as read along with 2 people and 1 group apaydin ruvido baker-group
  • Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm
    Biophys. J. (30 January 2008), biophysj.107.116053.
    by Douglas Ridgway, Gordon Broderick, Ana Lopez-Campistrous, Melania Ru'aini, Philip Winter, Matthew Hamilton, Pierre Boulanger, Andriy Kovalenko, Michael J Ellison
    posted to diffusion multiscale by sobolevnrm on 2008-05-27 11:40:19 as read along with 2 people and 1 group paulschlesinger arjunan baker-group
  • Redox entropy of plastocyanin: Developing a microscopic view of mesoscopic polar solvation
    The Journal of Chemical Physics, Vol. 128, No. 15. (2008)
    by David N Lebard, Dmitry V Matyushov
    posted to molecular_simulation multiscale solvation by sobolevnrm on 2008-05-22 12:03:41 as read along with 1 group baker-group
  • Coarse-grained models for simulations of multi-protein complexes: Application to ubiquitin binding
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Young C Kim, Gerhard Hummer
    posted to multiscale protein-protein_interactions by sobolevnrm on 2008-01-03 12:50:28 as read along with 3 people and 3 groups barry iantunbridge mikaellund structural_bioinformatics Bioinformatics baker-group
  • Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone
    The Journal of Chemical Physics, Vol. 127, No. 15. (2007)
    by Rajesh K Murarka, Adam Liwo, Harold A Scheraga
    posted to multiscale quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2007-11-02 11:12:27 as read along with 1 group baker-group
  • Demonstrated Convergence of the Equilibrium Ensemble for a Fast United-Residue Protein Model
    J. Chem. Theory Comput. (25 August 2007)
    by FM Ytreberg, Aroutiounian, DM Zuckerman
    posted to molecular_simulation multiscale by sobolevnrm on 2007-08-27 11:45:45 as read along with 1 group baker-group
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