Tag network_evolution [97 articles] Export

Recent papers classified by the tag network_evolution.

	The rise and fall of a networked society: A formal model [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 6. (10 February 2004), pp. 1439-1442. by Matteo Marsili, Fernando Vega-Redondo, FrantiÅ¡ek Slanina posted to network_evolution network by tessonec on 2009-11-10 17:33:57 as along with 5 people and 2 groups Kovanen mercutio korakot tglaisyer miriam Philosophy_of_Information Blog_and_Wiki_Research
	Complex networks: Structure and dynamics [My Copy] Physics Reports, Vol. 424, No. 4-5. (February 2006), pp. 175-308. by S. Boccaletti, V. Latora, Y. Moreno, M. Chavez, D. Hwang posted to network_evolution network by tessonec on 2009-11-10 11:16:55 as along with 37 people and 1 group heitzig-j jotwin dschafer yizhi hendysh vtraag janpaniev fierykylin acrmartins kshundyak kubyaddi ocs anphony panisson lfriedl jmenche tjpp ansobol jrw BarrosH afragop craigtalbert merazzle kevinweil gennaro muraken hariprasadt jaspervoskuilen flavian_vasile ltabourier salvoscellato watson nolodie khloudi ebalp Diego_Prada spool Complex_Real_Networks
	Effect of the accelerating growth of communications networks on their structure [My Copy] Physical Review E, Vol. 63, No. 2. (Jan 2001), 025101. by S. N. Dorogovtsev, J. F. F. Mendes posted to preferential_attachment network_evolution network accelerated_growth by tessonec on 2009-11-10 11:10:06 as
	Organization of growing random networks [My Copy] Physical Review E, Vol. 63, No. 6. (May 2001), 066123. by P. L. Krapivsky, S. Redner posted to network_evolution network by tessonec on 2009-11-09 14:10:01 as along with 2 people dannya222 pdlug
	Structure of Growing Networks with Preferential Linking [My Copy] Physical Review Letters, Vol. 85, No. 21. (Nov 2000), pp. 4633-4636. by S. N. Dorogovtsev, J. F. F. Mendes, A. N. Samukhin posted to preferential_attachment network_evolution network by tessonec on 2009-11-09 14:06:45 as along with 2 people jmenche vtraag
	Statistical mechanics of complex networks [My Copy] Reviews of Modern Physics, Vol. 74, No. 1. (Jan 2002), pp. 47-97. by Réka Albert, Albert L. Barabási posted to phase_transition network_evolution network by tessonec on 2009-11-09 11:41:28 as along with 47 people pak tjpp fastjoe23 mfuhr juhop conservatism mrkn hendysh pdlug davidecellai makrehchi MarkEveritt tnhh satch5841 ddahlem iris_2001 AnneB phreeza diamantis jmenche bruno alexphys eegilbert mullonc orahcio cmmorel itmeson mbliemel eyliu fukken cristinaalp merazzle kevina muraken babyone somasanyal jaspervoskuilen timflutre ransombriggs nolodie kikiblue7 e1000ian stefanoallesina jotwin ebalp spool jmchauvet
	Critical phenomena in complex networks [My Copy] Reviews of Modern Physics, Vol. 80, No. 4. (2008), 1275. by S. N. Dorogovtsev, A. V. Goltsev, J. F. F. Mendes posted to network_evolution network hierarchy by tessonec on 2009-11-09 11:40:28 as along with 7 people Herve jmenche kubyaddi muraken skirnir tjpp ocs
	Topology of Evolving Networks: Local Events and Universality [My Copy] Physical Review Letters, Vol. 85, No. 24. (11 Dec 2000), pp. 5234-5237. by Réka Albert, Albert L. Barabási posted to preferential_attachment network_evolution network by tessonec on 2009-11-06 17:59:49 as along with 3 people joseph_x_zhou beete muraken
	Evolution of biomolecular networks \|[mdash]\| lessons from metabolic and protein interactions [My Copy] Nat Rev Mol Cell Biol, Vol. 10, No. 11. (01 November 2009), pp. 791-803. by Takuji Yamada, Peer Bork posted to review protein-protein_interaction network_evolution evolutionary_constraint evolution by biomcgary on 2009-10-28 18:52:23 as along with 6 people venancio colmryan pinney nzm pedrobeltrao tmmurali
	Phylogenetic analysis of modularity in protein interaction networks. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (14 October 2009), 333. by Sinan Erten, Xin Li, Gurkan Bebek, Jing Li, Mehmet Koyutürk posted to systems_biology protein_interaction protein-protein_interaction phylogenomics phylogenetics network_evolution module_rewiring module by biomcgary on 2009-10-28 18:46:31 as along with 7 people and 2 groups sillitoe ppgardne grahamc zwang druvus barriot phoenixzxl Orengo Group Journal Picks Journal picks
	The Modular Organization of Protein Interactions in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (2 October 2009), e1000523. by José M. Peregrín-Alvarez, Xuejian Xiong, Chong Su, John Parkinson posted to protein_complex protein-protein_interaction network_evolution module modularity e_coli by biomcgary on 2009-10-13 22:47:39 as along with 6 people and 2 groups venancio CorinYeats grahamc kiekyon poirel dswan Orengo Group Journal Picks Bioinformatics
	Evolutionary constraints permeate large metabolic networks [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009), 231. by Andreas Wagner posted to network_evolution metabolic_networkds by idoerg on 2009-10-13 17:56:44 as along with 1 person apocapoc
	An evolutionary and structural characterization of mammalian protein complex organization. [My Copy] BMC genomics, Vol. 9, No. 1. (23 December 2008) by Philip Wong, Sonja Althammer, Andrea Hildebrand, et al.Andreas Kirschner, Philipp Pagel, Bernd Geissler, Pawel Smialowski, Florian Blöchl, Matthias Oesterheld, Thorsten Schmidt, Normann Strack, Fabian J. Theis, Andreas Ruepp, Dmitrij Frishman posted to network_evolution mammalian complex_organization by chica on 2009-10-06 11:35:04 as along with 3 people zwang phoenixzxl chad_davis
	The origins and evolution of functional modules: lessons from protein complexes. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 361, No. 1467. (29 March 2006), pp. 507-517. by Jose B. Pereira-Leal, Emmanuel D. Levy, Sarah A. Teichmann posted to robustness protein-protein_interaction network_evolution network module_rewiring module modularity essentiality by biomcgary on 2009-09-30 21:50:29 as along with 6 people saket agustinarce bicko choonpeng cjeans cmzmasek
	Empirical Analysis of an Evolving Social Network [My Copy] Science, Vol. 311, No. 5757. (6 January 2006), pp. 88-90. by Gueorgi Kossinets, Duncan J. Watts posted to social_network network_evolution e_mail by jsaramak on 2009-09-24 14:23:57 as along with 30 people and 10 groups jketterer dcurtis makrehchi dingfei aalves xiaolizi lupianiedu matteodellamico karhai A_Olympia kentsis mhay Martella tag voiklis AbnerCYH cristinaalp merazzle griota jirlong azygmunt adriandefroment PaulBHartzog JimFolk ungethym orahcio rrbarb tnhh kaihsyn spool iDataOLD Philosophy_of_Information Blog_and_Wiki_Research kdl ETEC533 metric_embeddings ColDyn AGH-IISG CSU_School_of_Education Web2-0_Education
	Non-random coextinctions in phylogenetically structured mutualistic networks. [My Copy] Nature, Vol. 448, No. 7156. (23 August 2007), pp. 925-928. by Enrico L. Rezende, Jessica E. Lavabre, Paulo R. Guimarães, Pedro Jordano, Jordi Bascompte posted to symbiosis speciation phylogenetic_methods phylogenetic network_evolution network extinction correlated_evolution co-evolution by biomcgary on 2009-09-08 22:02:45 as along with 3 people kubyaddi cmm zwang
	Evolvability and hierarchy in rewired bacterial gene networks. [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845. by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, et al.Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano posted to transcription_factor_binding_site transcription_factor rewiring network_evolution heirarchy gene_network gene_duplication evolvability by biomcgary on 2009-09-08 21:48:26 as along with 24 people and 4 groups megraw chica jimineep balabu kaarsinogen aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin hryk dbikard cactus margaritis chad_davis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
	Making the right connections: biological networks in the light of evolution [My Copy] BioEssays (31 August 2009), pp. NA-NA. by Christopher G. Knight, John W. Pinney posted to systems_biology review protein-protein_interaction network_evolution evolutionary_biology development by biomcgary on 2009-09-08 20:49:39 as along with 1 person VGreiff
	Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 405-410. by Assen Roguev, Sourav Bandyopadhyay, Martin Zofall, et al.Ke Zhang, Tamas Fischer, Sean R. Collins, Hongjing Qu, Michael Shales, Han-Oh Park, Jacqueline Hayles, Kwang-Lae Hoe, Dong-Uk Kim, Trey Ideker, Shiv I. Grewal, Jonathan S. Weissman, Nevan J. Krogan posted to yeast protein_complex protein-protein_interaction network_genetic network_evolution module_rewiring module epistasis by biomcgary on 2009-09-02 23:20:18 as along with 15 people dakelley ajbattle nzm Keksle jbhiatt lflorez roys sjung tmmurali zwang marck caseybrown emptyhb bpcusack brembs
	The human protein coevolution network. [My Copy] Genome research, Vol. 19, No. 10. (20 October 2009), pp. 1861-1871. by Elisabeth R. Tillier, Robert L. Charlebois posted to network_evolution co-evolution by phoenixzxl on 2009-08-28 08:06:33 as along with 7 people dfdong Garamonfok venancio jperkins TRHvidsten djkt tmmurali
	Evolution of a large online social network [My Copy] (15 Aug 2009) by Haibo Hu, Xiaofan Wang posted to social_network network_evolution by deanmalmgren on 2009-08-18 11:40:25 as along with 2 people pms Kovanen
	Discrete Temporal Models of Social Networks [My Copy] (9 Aug 2009) by Steve Hanneke, Wenjie Fu, Eric Xing posted to social_network network_evolution by deanmalmgren on 2009-08-17 18:08:20 as
	Evolution in protein interaction networks: co-evolution, rewiring and the role of duplication. [My Copy] Biochemical Society transactions, Vol. 37, No. Pt 4. (August 2009), pp. 768-771. by David L. Robertson, Simon C. Lovell posted to network_evolution coevolution by chica on 2009-08-11 17:07:23 as along with 1 person biomcgary
	Opinion and community formation in coevolving networks [My Copy] (4 Nov 2009) by Gerardo Iñiguez, János Kertész, Kimmo K. Kaski, R. A. Barrio posted to information_diffusion modularity network_evolution by deanmalmgren on 2009-08-10 12:26:28 as
	Mitogen-Activated Protein Kinase: Conservation of a Three-Kinase Module From Yeast to Human [My Copy] Physiol. Rev., Vol. 79, No. 1. (1 January 1999), pp. 143-180. by C. Widmann, S. Gibson, M. B. Jarpe, G. L. Johnson posted to mapk network_evolution network_module signalling_network by chica on 2009-08-10 11:51:17 as along with 2 people eudominguezmartin baikanamako
	Clues to the evolution of complex signaling machinery. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 28. (15 July 2008), pp. 9453-9454. by Bruce J. Mayer posted to choanoflagellate network_evolution tyrosine_phosphorylation by chica on 2009-08-10 11:38:46 as
	Unequal evolutionary conservation of human protein interactions in interologous networks. [My Copy] Genome biology, Vol. 8, No. 5. (29 May 2007), R95. by Kevin R. Brown, Igor Jurisica posted to interaction_evolution interolog network_evolution by chica on 2009-08-10 10:29:47 as along with 6 people saket cerca diamantis grahamc zwang winterschlaefer
	A complex-centric view of protein network evolution. [My Copy] Nucleic acids research, Vol. 37, No. 12. (1 July 2009), e88. by Nir Yosef, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to network_comparison network_evolution protein_complex by chica on 2009-08-10 10:07:58 as along with 11 people and 1 group carlk saket dakelley tomhebbron davidalee leemond31 druvus kiekyon neils tmmurali grahamc Orengo Group Journal Picks
	Organization of cell-regulatory systems through modular-protein-interaction domains. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 361, No. 1807. (15 June 2003), pp. 1251-1262. by Tony Pawson posted to modular_interaction network_evolution network_linkage by chica on 2009-08-03 22:27:08 as along with 1 person Evangelia
	Regulatory evolution across the protein interaction network. [My Copy] Nature genetics, Vol. 36, No. 10. (October 2004), pp. 1059-1060. by Bernardo Lemos, Colin D. Meiklejohn, Daniel L. Hartl posted to expression_pattern interaction_evolution network_evolution by chica on 2009-08-02 12:30:55 as along with 1 person and 1 group penka Nie
	Evolvability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 15. (21 July 1998), pp. 8420-8427. by M. Kirschner, J. Gerhart posted to interaction_network network_evolution network_module by chica on 2009-07-30 15:06:40 as along with 12 people and 1 group Scis0000002 ynaito rklancer betainverse sccook eldan ryang balicea larios timflutre qwermish mahmoodr Centre de Recherches Interdisciplinaires
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to coevolution interaction_evolution network_evolution by chica on 2009-07-15 22:23:27 as along with 8 people and 3 groups biomcgary qluo balicea grahamc fhsantanna marti barry sjcockell structural_bioinformatics McCammon Bioinformatics
	Modeling cellular machinery through biological network comparison. [My Copy] Nature biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433. by Roded Sharan, Trey Ideker posted to interaction_network interaction_prediction network_evolution protein_function_prediction by chica on 2009-07-15 20:59:13 as along with 22 people and 1 group akshayk sergiun cswinburne kaarsinogen isimpson tmmurali kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel mingzhi vietanh0 cdeane carlk T_lab
	Robustness of trans-European gas networks [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 1. (2009), 016106. by Rui Carvalho, Lubos Buzna, Flavio Bono, Eugenio Gutiérrez, Wolfram Just, David Arrowsmith posted to information_diffusion network_evolution robustness by deanmalmgren on 2009-07-13 11:33:10 as along with 1 person michaelbussmann
	Functional Evolution of the Yeast Protein Interaction Network [My Copy] Mol Biol Evol, Vol. 21, No. 7. (1 July 2004), pp. 1171-1176. by Victor Kunin, Jose B. Pereira-Leal, Christos A. Ouzounis posted to connectivity eukaryote fungi network network_evolution protein-protein_interaction yeast by biomcgary on 2009-07-09 21:35:19 as along with 1 person studentx
	Competition for Popularity in Catalog Networks [My Copy] (25 Jun 2009) by Mariano Beguerisse-Diaz, Mason A. Porter, Jukka-Pekka Onnela posted to bipartite_network models network_evolution by deanmalmgren on 2009-07-09 01:12:39 as along with 2 people Bolozna Kovanen
	Evolution of genetic networks underlying the emergence of thymopoiesis in vertebrates. [My Copy] Cell, Vol. 138, No. 1. (10 July 2009), pp. 186-197. by Baubak Bajoghli, Narges Aghaallaei, Isabell Hess, et al.Immanuel Rode, Nikolai Netuschil, Boon-Hui H. Tay, Byrappa Venkatesh, Jr-Kai K. Yu, Stacy L. Kaltenbach, Nicholas D. Holland, Dagmar Diekhoff, Christiane Happe, Michael Schorpp, Thomas Boehm posted to agnathan evo-devo evolution gene_network immune_system lamprey lymphocyte network_evolution thymus vertebrate by biomcgary on 2009-07-03 21:26:40 as along with 2 people yyfwuhan leliavski
	Percolation Transition of Scale-free Networks in Achlioptas Process [My Copy] (2 Jul 2009) by Y. S. Cho, J. S. Kim, J. Park, B. Kahng, D. Kim posted to network network_evolution percolation by deanmalmgren on 2009-07-03 11:00:50 as
	How the global structure of protein interaction networks evolves. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 270, No. 1514. (7 March 2003), pp. 457-466. by Andreas Wagner posted to interaction_evolution network_evolution by chica on 2009-07-02 14:39:23 as along with 3 people saket yoh iris_2001
	Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits [My Copy] Annual Review of Biochemistry, Vol. 75, No. 1. (17 March 2006), pp. 655-680. by Roby P. Bhattacharyya, Attila Reményi, Brian J. Yeh, Wendell A. Lim posted to evolvability network_evolution network_module signalling_network by chica on 2009-07-01 14:19:19 as along with 13 people tomhebbron Scis0000002 mmcclean laurabailey rklancer matzke imouthesmp choonpeng koller cjeans melting carlk gulkur
	The Yeast Protein Interaction Network Evolves Rapidly and Contains Few Redundant Duplicate Genes [My Copy] Mol Biol Evol, Vol. 18, No. 7. (1 July 2001), pp. 1283-1292. by Andreas Wagner posted to duplication network_evolution yeast by chica on 2009-07-01 13:56:29 as along with 7 people dannya222 kentz dragonrez shivaram gurkanbebek koller gcalda
	How to reconstruct a large genetic network from n gene perturbations in fewer than n(2) easy steps. [My Copy] Bioinformatics, Vol. 17, No. 12. (December 2001), pp. 1183-1197. by A. Wagner posted to network_evolution network_reconstruction by chica on 2009-07-01 13:53:48 as along with 1 person systemsbiology
	Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications [My Copy] BMC Evolutionary Biology, Vol. 4, No. 1. (27 November 2004), 51. by Johannes Berg, Michael Lassig, Andreas Wagner posted to duplication evolutionary_model network_evolution yeast by chica on 2009-07-01 13:50:32 as along with 8 people saket sergiun kaarsinogen diamantis phoenixzxl j3xucite timflutre iris_2001
	Multifunctionality and robustness trade-offs in model genetic circuits. [My Copy] Biophysical journal, Vol. 94, No. 8. (15 April 2008), pp. 2927-2937. by O. C. Martin, A. Wagner posted to drosophila network_evolution robustness transcriptional_network by chica on 2009-07-01 13:42:04 as
	Neutralism and selectionism: a network-based reconciliation. [My Copy] Nature reviews. Genetics, Vol. 9, No. 12. (29 December 2008), pp. 965-974. by A. Wagner posted to network_evolution neutral_evolution selection by chica on 2009-07-01 13:33:20 as along with 10 people gwallau operon ilyashl Petersarkies ccots pansapiens lp2 renewang pkonings gjuggler
	Does selection mold molecular networks? [My Copy] Science's STKE : signal transduction knowledge environment, Vol. 2003, No. 202. (30 September 2003) by A. Wagner posted to network_evolution selection by chica on 2009-07-01 13:31:06 as along with 2 people lshaw timflutre
	Evolution and dynamics of protein interactions and networks [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 349-357. by E. Levy, J. Pereiraleal posted to interaction_evolution network_evolution by chica on 2009-07-01 13:08:09 as along with 8 people saket carlk paolomarcatili guhjy neils cabbagesofdoom marck zdai
	Evolutionary dynamics of prokaryotic transcriptional regulatory networks. [My Copy] Journal of molecular biology, Vol. 358, No. 2. (28 April 2006), pp. 614-633. by Madan M. Babu, S. A. Teichmann, L. Aravind posted to network_evolution transcriptional_network by chica on 2009-07-01 12:35:18 as along with 8 people kaarsinogen jjray balabu Retchless tny tvdbulck timflutre cjeans
	Specificity and evolvability in eukaryotic protein interaction networks. [My Copy] PLoS computational biology, Vol. 3, No. 2. (16 February 2007), e25. by Pedro Beltrao, Luis Serrano posted to evolvability network_evolution specificity by chica on 2009-07-01 11:49:22 as along with 6 people saket kiekyon marti aalibes dylan77 aheilbut
	Molecular evolution in large genetic networks: does connectivity equal constraint? [My Copy] Journal of molecular evolution, Vol. 58, No. 2. (February 2004), pp. 203-211. by M. W. Hahn, G. C. Conant, A. Wagner posted to connectivity network_evolution by chica on 2009-07-01 10:59:29 as along with 3 people and 1 group diamantis penka cjeans Nie

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network	24
modularity	9
dynamics	8
protein-protein_interaction	8
evolution	7
preferential_attachment	7
social_network	7
collective_behavior	6
information_diffusion	6
accelerated_growth	5
interaction_evolution	5
models	5
network_ppi	5
co-evolution	4
evolvability	4
module	4
robustness	4
yeast	4
economics	3
module_rewiring	3
network_module	3
percolation	3
protein_complex	3
protein_interaction	3
biology	2
coevolution	2
connectivity	2
development	2
duplication	2
evolutionary_constraint	2
evolutionary_histories	2
functional_evolution	2
gene_duplication	2
gene_network	2
interaction_network	2
interaction_networks	2
network_analysis	2
network_dynamic	2
network_modules	2
review	2
selection	2
self-organized_criticality	2
signalling_network	2
specificity	2
systems_biology	2
transcriptional_network	2
agnathan	1
bipartite_network	1
choanoflagellate	1
complex	1
complex_organization	1
complex_systems	1
drosophila	1
e_coli	1
e_mail	1
ecology	1
epistasis	1
essentiality	1
eukaryote	1
evo-devo	1
evolutionary_model	1
expression_pattern	1
game_theory	1
genomics	1
heirarchy	1
hgt	1
hierarchical	1
hierarchy	1
homology	1
immune_system	1
insight	1
interaction_prediction	1
interolog	1
lamprey	1
lymphocyte	1
mapk	1
metabolic	1
metabolic_networkds	1
modular_interaction	1
monte_carlo	1
morphology	1
nestedness	1
network_comparison	1
network_genetic	1
network_reconstruction	1
neural_network	1
phylogenetic	1
phylogenetic_methods	1
phylogenomics	1
power-laws	1
ppi_network	1
prediction_interface	1
predictive_biology	1
protein_function_prediction	1
rewiring	1
snps	1
speciation	1
symbiosis	1
synchronization	1
thymus	1

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