Tag nextgensequencing [26 articles] Export

Recent papers classified by the tag nextgensequencing.

	Benchmarking Next-Generation Transcriptome Sequencing for Functional and Evolutionary Genomics [My Copy] Mol Biol Evol In Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2731-2744. by John G. Gibbons, Eric M. Janson, Chris T. Hittinger, Mark Johnston, Patrick Abbot, Antonis Rokas posted to transcription_profiling shortread nextgensequencing gene_expression by stajich to the group Mycology on 2009-09-26 22:37:40 as along with 7 people djkt mlog kiekyon biomcgary GustavoLacerda natstreet druvus
	De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R94. by Scott DiGuistini, Nancy Liao, Darren Platt, et al.Gordon Robertson, Michael Seidel, Simon Chan, T. Roderick Docking, Inanc Birol, Robert Holt, Martin Hirst, Elaine Mardis, Marco Marra, Richard Hamelin, Jorg Bohlmann, Colette Breuil, Steven Jones posted to nextgensequencing by stajich to the group Mycology on 2009-09-13 00:39:09 as along with 12 people and 1 group darian n00c orzenil GustavoLacerda sotacam gillianturgeon natstreet druvus jamselem sujaikumar kiekyon ppgardne Journal picks
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to nextgensequencing assembly by stajich to the group Mycology on 2009-08-30 21:11:52 as along with 20 people and 1 group n00c davidmam klo operon fstrozzi kiekyon torfinnnome dakelley jamselem err129 djkt darian APRegier thegoose danmaclean natstreet neils druvus GustavoLacerda avilella Journal picks
	SHREC: a short-read error correction method [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2157-2163. by Jan Schroder, Heiko Schroder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt posted to nextgensequencing by skembel on 2009-08-25 19:40:05 as along with 13 people and 1 group heliopais adthrasher dakelley thegoose katholt sotacam djkt rtogawa torfinnnome natstreet druvus n00c jmeppley Journal picks
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to nextgensequencing browser by stajich to the group Mycology on 2009-08-14 23:59:58 as along with 28 people and 1 group humburg hzoltan darian dakelley tonamswish inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl n00c torfinnnome nuin kshameer neils druvus natstreet BergmanLab
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted to sequencing nextgensequencing by stajich to the group Mycology on 2009-08-14 06:07:28 as along with 13 people and 1 group heliopais dakelley lp2 megraw rdiaz torfinnnome djkt n00c farhat druvus polivares fpattyn jbhiatt BergmanLab
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted to nextgensequencing by adamjamesreid to the group Journal picks on 2009-08-11 15:40:41 as along with 20 people and 3 groups manduca hzoltan daveGerrard daforerog feeldead n00c debasis jgill mqbphcw3 sotacam GustavoLacerda dswan mlog gwallau ewilban1 ThomasDOtto jasontsai polivares natstreet druvus Bioinformatics LabDros BergmanLab
	Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2074-2075. by Kathryn E. Holt, Yik Y. Teo, Heng Li, et al.Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill posted to allelefreq nextgensequencing sequencing snp by stajich to the group Mycology on 2009-08-07 19:58:43 as along with 8 people and 1 group liqbbi jsatkosk jandot djkt guhjy farhat sandfire druvus iSEEM
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to nextgensequencing by adamjamesreid to the group Journal picks on 2009-08-04 09:09:57 as along with 17 people and 2 groups torfinnnome hzoltan darian debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai ThomasDOtto heliopais guhjy cisevol n00c natstreet druvus jbhiatt JLab BergmanLab
	Transcriptome analysis by strand-specific sequencing of complementary DNA [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), e123. by Dmitri Parkhomchuk, Tatiana Borodina, Vyacheslav Amstislavskiy, et al.Maria Banaru, Linda Hallen, Sylvia Krobitsch, Hans Lehrach, Alexey Soldatov posted to fungi nextgensequencing rnaseq saccharomyces yeast by stajich to the group Mycology on 2009-07-26 17:15:44 as along with 5 people and 1 group hzoltan inesdesantiago dswan guhjy ghattem SIMR bioinformatics
	ABACAS: algorithm-based automatic contiguation of assembled sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1968-1969. by Samuel Assefa, Thomas M. Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman posted to nextgensequencing by adamjamesreid on 2009-07-22 17:15:46 as along with 7 people and 1 group sconlan GustavoLacerda jmeppley sandfire druvus pengchy AlexBateman Journal picks
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to nextgensequencing by adamjamesreid on 2009-07-22 17:13:14 as along with 28 people and 6 groups darian nuin hzoltan agbiotec torfinnnome natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	Limitations and possibilities of small RNA digital gene expression profiling [My Copy] Nat Meth, Vol. 6, No. 7. (01 July 2009), pp. 474-476. by Sam E. V. Linsen, Elzo de Wit, Georges Janssens, et al.Sheila Heater, Laura Chapman, Rachael K. Parkin, Brian Fritz, Stacia K. Wyman, Ewart de Bruijn, Emile E. Voest, Scott Kuersten, Muneesh Tewari, Edwin Cuppen posted to nextgensequencing profiling sequencing smallrna by stajich to the group Mycology on 2009-07-14 20:10:51 as along with 8 people and 1 group jfr vingron pengchy guhjy lp2 timhubbard gdb fpattyn RGASP
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to bioinformatics methods nextgensequencing resequencing snp solexa by stajich to the group Mycology on 2009-07-01 18:57:14 as along with 16 people and 2 groups humburg hzoltan Peiyong darian seb1 heliopais mkiyer dakelley djkt PabloMarin guhjy n00c orzenil natstreet druvus malcook Journal picks SIMR bioinformatics
	Fast and Accurate Short Read Alignment with Burrows-Wheeler Transform. [My Copy] Bioinformatics (Oxford, England) (18 May 2009) by Heng Li, Richard Durbin posted to alignment bwa nextgensequencing by stajich to the group Mycology on 2009-05-24 00:41:37 as along with 3 people and 1 group jasontsai jmeppley AlexBateman Journal picks
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to bioinformatics genome mapping nextgensequencing sequencing shortread by stajich to the group Mycology on 2009-05-22 17:40:49 as along with 22 people and 3 groups heliopais jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew farhat humburg kshameer operon GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Journal picks Bioinformatics
	Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery [My Copy] BMC Genomics, Vol. 10 (29 April 2009), 203. by Matthew, Andrew J. Dewoody posted to 454 nextgensequencing normalization by stajich to the group Mycology on 2009-05-20 17:50:19 as along with 2 people Schmidtc Thaverkamp
	Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 219. by Eli Meyer, Galina Aglyamova, Shi Wang, et al.Jade B. Carter, David Abrego, John Colbourne, Bette Willis, Mikhail Matz posted to 454 est nextgensequencing by stajich to the group Mycology on 2009-05-14 17:57:40 as along with 5 people orzenil mlog jonilaserson Thaverkamp idoerg
	Estimating accuracy of RNA-Seq and microarrays with proteomics. [My Copy] BMC genomics, Vol. 10, No. 1. (16 April 2009), 161. by Xing Fu, Ning Fu, Song Guo, et al.Zheng Yan, Ying Xu, Hao Hu, Corinna Menzel, Wei Chen, Yixue Li, Rong Zeng, Philipp Khaitovich posted to nextgensequencing rnaseq by stajich to the group Mycology on 2009-04-20 00:16:41 as along with 7 people hzoltan sjcockell GustavoLacerda guhjy burak dswan shikin
	Evaluation of next generation sequencing platforms for population targeted sequencing studies. [My Copy] Genome biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline C. Ng, Robert L. Strausberg, et al.Xiaoyun Wang, Timothy B. Stockwell, Karen Y. Beeson, Nicholas J. Schork, Sarah S. Murray, Eric J. Topol, Samuel Levy, Kelly A. Frazer posted to nextgensequencing sequencing by stajich to the group Mycology on 2009-04-13 21:36:39 as along with 27 people and 1 group humburg dutilh heliopais jfr hzoltan dbensasson GustavoLacerda adijr agbiotec jgill darian jandot n00c jonilaserson maren inesdesantiago mlog ppgardne kiekyon michaelbarton idoerg skembel giovanni druvus lwaldron djkt natstreet Journal picks
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to assembly bioinformatics computational_biology nextgensequencing parallel by stajich to the group Mycology on 2009-03-06 16:08:59 as along with 27 people and 1 group darian jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan jbhiatt erikarner BergmanLab
	QSRA: a quality-value guided de novo short read assembler. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by D. W. Bryant, W. K. Wong, T. C. Mockler posted to assembly bioinformatics methods nextgensequencing shortread by stajich to the group Mycology on 2009-02-28 19:32:31 as along with 10 people and 1 group hzoltan GustavoLacerda GeeSharpMinor jfr n00c dakelley pengchy natstreet idoerg druvus Bioinformatics
	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 829-834. by Anton Valouev, David S. Johnson, Andreas Sundquist, et al.Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M. Myers, Arend Sidow posted to bioinformatics chipseq nextgensequencing by stajich to the group Mycology on 2009-02-19 00:12:08 as along with 20 people bsamal jwfoley ewilban1 nklee bertelsen smiddha clearbluespring WanderingAengus polivares ptrobajo mdperry idonaldson gdb megraw kengg alhufton guhjy kjglennie bryankr maximilianh
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted to bioinformatics chipseq methods nextgensequencing shortread by stajich to the group Mycology on 2009-02-19 00:11:11 as along with 19 people and 1 group hzoltan darian n00c polivares idonaldson tonamswish ewilban1 humburg Thaverkamp natstreet druvus cassj WanderingAengus rschulz jfr sconlan reyez guhjy vega Bioinformatics
	High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer [My Copy] PLoS ONE, Vol. 4, No. 1. (1 January 2009), e4108. by Shin-ichi Hashimoto, Wei Qu, Budrul Ahsan, et al.Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano, Clarence C. Lee, Robert C. Nutter, Shinichi Morishita, Kouji Matsushima posted to 5 5prime annotation nextgensequencing tag by stajich to the group Mycology on 2009-01-02 19:12:12 as along with 8 people jwfoley tprpip guhjy poschm jfr jasontsai GustavoLacerda Cortel
	The new paradigm of flow cell sequencing [My Copy] Genome Research, Vol. 18, No. 6. (1 June 2008), pp. 839-846. by Robert A. Holt, Steven J. M. Jones posted to 454 genome illumina nextgensequencing sequencing solexa by stajich to the group Mycology on 2008-06-02 20:17:41 as along with 18 people n00c mtagaya thegoose2 idoerg treangen druvus kintoki tmmurali reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr

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bioinformatics	12
sequencing	12
shortread	8
454	7
methods	7
assembly	6
chipseq	4
genome	4
rnaseq	4
snp	4
solexa	4
5	2
5prime	2
alignment	2
allelefreq	2
annotation	2
browser	2
bwa	2
computational_biology	2
est	2
fungi	2
gene_expression	2
illumina	2
mapping	2
normalization	2
parallel	2
profiling	2
resequencing	2
saccharomyces	2
smallrna	2
tag	2
transcription_profiling	2
yeast	2
population_genomics	1

Tag nextgensequencing [26 articles] Export

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