Tag nmd [74 articles] Export

Recent papers classified by the tag nmd.

	Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations [My Copy] RNA (22 October 2009) by Tadashi Kawashima, Matteo Pellegrini, Guillaume F. Chanfreau posted to splice_factor nmd double_knockdown by cajunsushi on 2009-11-17 02:44:19 as
	Genome-wide mapping of alternative splicing in Arabidopsis thaliana [My Copy] Genome Research (26 October 2009) by Sergei A. Filichkin, Henry D. Priest, Scott A. Givan, et al.Rongkun Shen, Douglas W. Bryant, Samuel E. Fox, Weng-Keen Wong, Todd C. Mockler posted to rust rna-seq nmd arabidopsis by cajunsushi on 2009-11-17 02:29:39 as along with 4 people bpcusack kshameer GeeSharpMinor natstreet
	High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R101. by Arun Ramani, Andrew Nelson, Philipp Kapranov, Ian Bell, Thomas Gingeras, Andrew Fraser posted to worm transcriptome nmd development by cajunsushi on 2009-11-17 00:57:27 as along with 1 group Journal picks
	Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 7. (17 February 2009), pp. 2453-2458. by Yukio Kurihara, Akihiro Matsui, Kousuke Hanada, et al.Makiko Kawashima, Junko Ishida, Taeko Morosawa, Maho Tanaka, Eli Kaminuma, Yoshiki Mochizuki, Akihiro Matsushima, Tetsuro Toyoda, Kazuo Shinozaki, Motoaki Seki posted to nmd by bpcusack on 2009-11-03 18:05:47 as
	UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis [My Copy] The Plant Journal, Vol. 47, No. 3. (August 2006), pp. 480-489. by Luis Arciga-Reyes, Lucie Wootton, Martin Kieffer, Brendan Davies posted to nmd microrna by hcoller on 2009-10-05 21:11:45 as
	Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay. [My Copy] The EMBO journal, Vol. 27, No. 11. (4 June 2008), pp. 1585-1595. by Zoltán Kerényi, Zsuzsanna Mérai, László Hiripi, et al.Anna Benkovics, Péter Gyula, Christophe Lacomme, Endre Barta, Ferenc Nagy, Dániel Silhavy posted to nmd by bpcusack on 2009-10-05 17:46:10 as
	Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival. [My Copy] Molecular and cellular biology, Vol. 29, No. 13. (July 2009), pp. 3517-3528. by Nadine Wittkopp, Eric Huntzinger, Catrin Weiler, et al.Jérôme Saulière, Steffen Schmidt, Mahendra Sonawane, Elisa Izaurralde posted to nmd by bpcusack on 2009-10-05 17:45:51 as
	NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements. [My Copy] Genes & development, Vol. 22, No. 10. (15 May 2008), pp. 1381-1396. by Joachim Weischenfeldt, Inge Damgaard, David Bryder, et al.Kim Theilgaard-Mönch, Lina A. Thoren, Finn Cilius C. Nielsen, Sten Eirik E. Jacobsen, Claus Nerlov, Bo Torben T. Porse posted to nmd by bpcusack on 2009-10-05 17:45:32 as
	A Competition between Stimulators and Antagonists of Upf Complex Recruitment Governs Human Nonsense-Mediated mRNA Decay [My Copy] PLoS Biol, Vol. 6, No. 4. (29 April 2008), e111. by Guramrit Singh, Indrani Rebbapragada, Jens Lykke-Andersen posted to nmd by hcoller on 2009-10-04 21:35:10 as
	Exon-trapping mediated by the human retrotransposon SVA [My Copy] Genome Research, Vol. 19, No. 11. (27 November 2009), pp. 1983-1991. by Dustin C. Hancks, Adam D. Ewing, Jesse E. Chen, Katsushi Tokunaga, Haig H. Kazazian posted to retro nmd by bpcusack on 2009-10-01 16:41:46 as along with 1 person operon
	Co-translational mRNA decay in Saccharomyces cerevisiae. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 225-229. by Wenqian Hu, Thomas J. Sweet, Sangpen Chamnongpol, Kristian E. Baker, Jeff Coller posted to translation nmd by bpcusack on 2009-09-03 19:13:11 as along with 4 people and 1 group biomcgary nzm jjray TRHvidsten Journal picks
	Noisy splicing, more than expression regulation, explains why some exons are subject to nonsense-mediated mRNA decay. [My Copy] BMC biology, Vol. 7 (14 May 2009), 23. by Zhenguo Zhang, Dedong Xin, Ping Wang, et al.Li Zhou, Landian Hu, Xiangyin Kong, Laurence D. Hurst posted to nmd by bpcusack on 2009-08-31 17:41:53 as
	The mammalian nonsense-mediated mRNA decay pathway: to decay or not to decay! Which players make the decision? [My Copy] FEBS letters, Vol. 583, No. 3. (4 February 2009), pp. 499-505. by A. L. Silva, L. Romão posted to bachelor nmd by tux2000 on 2009-06-21 21:32:28 as along with 1 person inesdesantiago
	Disassembly of Exon Junction Complexes by PYM [My Copy] Cell, Vol. 137, No. 3. (01 May 2009), pp. 536-548. by Niels H. Gehring, Styliani Lamprinaki, Andreas E. Kulozik, Matthias W. Hentze posted to bachelor nmd by tux2000 on 2009-06-21 19:00:44 as
	How introns influence and enhance eukaryotic gene expression. [My Copy] Trends in biochemical sciences, Vol. 28, No. 4. (April 2003), pp. 215-220. by H. Le Hir, A. Nott, M. J. Moore posted to nmd by bpcusack on 2009-06-15 13:19:19 as
	Splicing enhances translation in mammalian cells: an additional function of the exon junction complex. [My Copy] Genes & development, Vol. 18, No. 2. (15 January 2004), pp. 210-222. by A. Nott, H. Le Hir, M. J. Moore posted to nmd by bpcusack on 2009-06-15 13:17:54 as
	EJCs at the heart of translational control. [My Copy] Cell, Vol. 133, No. 2. (18 April 2008), pp. 213-216. by H. Le Hir, B. Séraphin posted to nmd by bpcusack on 2009-06-15 13:15:26 as
	Reversal of Neuromotor and Cognitive Dysfunction in an Enriched Environment Combined with Multimodal Early Onset Stimulation after Traumatic Brain Injury in Rats [My Copy] Journal of Neurotrauma, Vol. 22, No. 7. (July 2005), pp. 772-782. by Marc Maegele, Marcela Lippert-Gruener, Thorsten Ester-Bode, et al.Stefan Sauerland, Ute Schã¤fer, Marek Molcanyi, Rolf Lefering, Bertil Bouillon, Wolfram F. Neiss, Doychin N. Angelov, Norfried Klug, Tracy K. Mcintosh, Edmund A. Neugebauer posted to animal cognitive environment neuromotor nmd tbi therapy by willwade on 2009-05-29 23:18:35 as
	Widespread impact of nonsense-mediated mRNA decay on the yeast intronome. [My Copy] Molecular cell, Vol. 31, No. 3. (8 August 2008), pp. 360-370. by S. Sayani, M. Janis, C. Y. Lee, I. Toesca, G. F. Chanfreau posted to nmd by bpcusack on 2009-05-29 18:27:35 as
	Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 18. (5 May 2009), pp. 7507-7512. by Sarah E. Calvo, David J. Pagliarini, Vamsi K. Mootha posted to nmd by bpcusack on 2009-04-22 12:34:26 as along with 4 people daforerog psique fenghezi brianb
	Execution of nonsense-mediated mRNA decay: what defines a substrate? [My Copy] Current opinion in cell biology (7 April 2009) by Indrani Rebbapragada, Jens Lykke-Andersen posted to atp decay mrna nmd nonsense smg smg1 upf1 by sebastien_vigneau on 2009-04-21 14:54:06 as
	Equal transcription rates of productively and nonproductively rearranged immunoglobulin micro heavy chain alleles in a pro-B cell line. [My Copy] RNA (New York, N.Y.) (10 April 2009) by Andrea B B. Eberle, Kai Herrmann, Hans-Martin M. Jäck, Oliver Mühlemann posted to ig immunoglobulin nmd prob ptc rearrangement recombination by sebastien_vigneau on 2009-04-15 20:06:50 as
	Intron size, abundance, and distribution within untranslated regions of genes. [My Copy] Molecular biology and evolution, Vol. 23, No. 12. (December 2006), pp. 2392-2404. by X. Hong, D. G. Scofield, M. Lynch posted to nmd by bpcusack on 2009-03-10 18:38:52 as
	Position of the final intron in full-length transcripts: determined by NMD? [My Copy] Molecular biology and evolution, Vol. 24, No. 4. (April 2007), pp. 896-899. by D. G. Scofield, X. Hong, M. Lynch posted to nmd by bpcusack on 2009-03-10 18:35:56 as
	An Endoribonuclease Functionally Linked to Perinuclear mRNP Quality Control Associates with the Nuclear Pore Complexes [My Copy] PLoS Biology, Vol. 7, No. 1. (1 January 2009), e8. by Michal Skruný, Claudia Schneider, Attila Rácz, Julan Weng, David Tollervey, Ed Hurt posted to nmd nuclear nuclear_export transcription translational_control by stajich to the group Mycology on 2009-02-18 05:46:39 as
	Early nonsense: mRNA decay solves a translational problem [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 6. (June 2006), pp. 415-425. by Nadia Amrani, Matthew S. Sachs, Allan Jacobson posted to mrna nmd nonsensemediated translation by jonathanjacobs to the group PROTEIN TRANSLATION on 2008-10-31 17:43:26 as along with 3 people and 3 groups anafi dchughes leemary4 Molecular Biology G4ID Genetics-of-Gambling
	Codon Optimization Increases Steady-State mRNA Levels in Aspergillus oryzae Heterologous Gene Expression [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 21. (1 November 2008), pp. 6538-6546. by Masafumi Tokuoka, Mizuki Tanaka, Kazuhisa Ono, Shinobu Takagi, Takahiro Shintani, Katsuya Gomi posted to aspergillus codon_bias engineering gene_expression nmd by stajich to the group Mycology on 2008-10-27 22:37:36 as
	Nonsense-Mediated Decay of Human HEXA mRNA [My Copy] Mol. Cell. Biol., Vol. 21, No. 16. (15 August 2001), pp. 5512-5519. by Kavitha S. Rajavel, Elizabeth F. Neufeld posted to nmd rna by tibbitts on 2008-10-21 09:34:39 as
	The multiple lives of NMD factors: balancing roles in gene and genome regulation [My Copy] Nat Rev Genet, Vol. 9, No. 9. (2008), pp. 699-712. by Olaf Isken, Lynne E. Maquat posted to nmd by bpcusack on 2008-08-22 09:10:13 as along with 2 people and 1 group dakelley stajich Mycology
	The human intronless melanocortin 4-receptor gene is NMD insensitive. [My Copy] Human molecular genetics, Vol. 11, No. 3. (1 February 2002), pp. 331-335. by K. S. Brocke, G. Neu-Yilik, N. H. Gehring, M. W. Hentze, A. E. Kulozik posted to nmd by bpcusack on 2008-08-05 10:53:37 as
	Sequences within the last intron function in RNA 3'-end formation in cultured cells. [My Copy] Molecular and cellular biology, Vol. 13, No. 6. (June 1993), pp. 3359-3369. by D. Nesic, J. Cheng, L. E. Maquat posted to nmd by bpcusack on 2008-08-05 10:36:56 as
	Mammalian heat shock p70 and histone H4 transcripts, which derive from naturally intronless genes, are immune to nonsense-mediated decay. [My Copy] RNA (New York, N.Y.), Vol. 7, No. 3. (March 2001), pp. 445-456. by L. E. Maquat, X. Li posted to nmd by bpcusack on 2008-08-05 10:34:44 as
	Negative selection pressure against premature protein truncation is reduced by alternative splicing and diploidy. [My Copy] Trends in genetics : TIG, Vol. 20, No. 10. (October 2004), pp. 472-475. by Y. Xing, C. J. Lee posted to dominant_negative nmd by bpcusack on 2008-08-04 10:12:29 as
	Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay. [My Copy] Molecular and cellular biology, Vol. 28, No. 13. (July 2008), pp. 4320-4330. by A. L. Saltzman, Y. K. Kim, Q. Pan, M. M. Fagnani, L. E. Maquat, B. J. Blencowe posted to nmd by bpcusack on 2008-08-04 10:10:16 as
	Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay [My Copy] RNA, Vol. 14, No. 3. (March 2008), pp. 563-576. by Ana L. Silva, PatrÃcia Ribeiro, Ãngela InÃ¡cio, Stephen A. Liebhaber, LuÃsa RomÃ£o posted to nmd by bpcusack on 2008-07-31 22:16:22 as along with 1 person hcoller
	The canonical UPF1-dependent nonsense-mediated mRNA decay is inhibited in transcripts carrying a short open reading frame independent of sequence context. [My Copy] RNA (New York, N.Y.), Vol. 12, No. 12. (December 2006), pp. 2160-2170. by A. L. Silva, F. J. Pereira, A. Morgado, et al.J. Kong, R. Martins, P. Faustino, S. A. Liebhaber, L. Romão posted to nmd by bpcusack on 2008-07-31 22:16:00 as
	Mechanistic insights and identification of two novel factors in the C. elegans NMD pathway. [My Copy] Genes & development, Vol. 21, No. 9. (1 May 2007), pp. 1075-1085. by D. Longman, R. H. Plasterk, I. L. Johnstone, J. F. Cáceres posted to nmd by bpcusack on 2008-07-31 22:14:49 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay. [My Copy] Nature, Vol. 432, No. 7013. (4 November 2004), pp. 112-118. by N. Amrani, R. Ganesan, S. Kervestin, D. A. Mangus, S. Ghosh, A. Jacobson posted to nmd by bpcusack on 2008-07-31 22:14:04 as along with 1 person and 1 group heliopais microRNA
	Translational regulation of gene expression. [My Copy] Genome biology, Vol. 5, No. 12. (2004) by S. Kervestin, N. Amrani posted to nmd by bpcusack on 2008-07-31 22:12:50 as
	PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Ashton Belew, Nicholaus Hepler, Jonathan Jacobs, Jonathan Dinman posted to bioinformatics biology cerevisiae computational database decay frameshift genome mrna nmd pseudoknot rna saccharomyces structure translation virus yeast by jonathanjacobs on 2008-07-17 17:12:43 as
	Biased codon usage near intron-exon junctions: selection on splicing enhancers, splice-site recognition or something else? [My Copy] Trends in Genetics, Vol. 21, No. 5. (May 2005), pp. 256-259. by Jean-Vincent Chamary, Laurence D. Hurst posted to cited_by_chamary nmd by bpcusack on 2008-07-15 16:24:10 as along with 2 people saunders setar
	Alternative splicing induced by nonsense mutations in the immunoglobulin mu VDJ exon is independent of truncation of the open reading frame. [My Copy] RNA (New York, N.Y.), Vol. 11, No. 2. (February 2005), pp. 139-146. by M. Bühler, O. Mühlemann posted to nas nmd by bpcusack on 2008-07-14 21:43:59 as
	Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species. [My Copy] Curr Opin Cell Biol, Vol. 17, No. 3. (June 2005), pp. 316-325. by E. Conti, E. Izaurralde posted to becker nmd by bratwurst on 2008-07-03 13:06:54 as along with 2 people ccots perrywoo
	Posttranscriptional Gene Regulation by Spatial Rearrangement of the 3′ Untranslated Region [My Copy] PLoS Biology, Vol. 6, No. 4. (1 April 2008), e92. by Andrea B. Eberle, Lukas Stalder, Hansruedi Mathys, Rodolfo Z. Orozco, Oliver Mühlemann posted to cell codon conserved decay degradation evolution folding function gene human mechanism mrna nmd nonsensemediated pabpc pathway polya polyabinding posttranscriptional protein ptc regulation termination translation untranslated by jonathanjacobs to the group PROTEIN TRANSLATION on 2008-04-30 15:49:48 as
	hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay. [My Copy] Molecular and cellular biology, Vol. 26, No. 4. (February 2006), pp. 1272-1287. by J. Wittmann, E. M. Hol, H. M. Jäck posted to microarray nmd nonsense-mediated by bertelsen on 2008-04-30 01:27:20 as
	Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression [My Copy] Genes Dev., Vol. 20, No. 2. (15 January 2006), pp. 153-158. by Qun Pan, Arneet L. Saltzman, Yoon K. Kim, et al.Christine Misquitta, Ofer Shai, Lynne E. Maquat, Brendan J. Frey, Benjamin J. Blencowe posted to decay microarray mrna nmd nonsense-mediated quantitative splicing by bertelsen on 2008-04-30 01:22:02 as along with 3 people eoghanharr ccots tabu
	Nuclear RNA Turnover [My Copy] Cell, Vol. 108, No. 4. (22 February 2002), pp. 431-434. by Melissa J. Moore posted to degradation nmd nuclear rna turnover by bertelsen on 2008-04-18 21:38:04 as
	A programmed -1 ribosomal frameshift signal can function as a cis-acting mRNA destabilizing element [My Copy] Nucl. Acids Res., Vol. 32, No. 2. (3 February 2004), pp. 784-790. by Ewan P. Plant, Pinger Wang, Jonathan L. Jacobs, Jonathan D. Dinman posted to genomics genes frameshift codon consensus hypothesis mrna mutation nmd polycistronic ribosome transcription translation virus yeast by jonathanjacobs on 2008-03-28 04:22:52 as
	Nonsense-mediated mRNA decay: from vacuum cleaner to Swiss army knife [My Copy] Genome Biology, Vol. 5, No. 4. (2004) by Gabriele N. Yilik, Niels Gehring, Matthias Hentze, Andreas Kulozik posted to decay mrna nmd nonsense-mediated by bertelsen on 2008-03-07 20:41:18 as
	An unappreciated role for RNA surveillance [My Copy] Genome Biology, Vol. 5, No. 2. (2004), R8. by R. Tyler Hillman, Richard Green, Steven Brenner posted to decay mrna nmd nonsense-mediated by bertelsen on 2008-03-07 16:41:11 as along with 2 people kongl Cortel

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mrna	11
translation	8
decay	7
nonsensemediated	5
regulation	5
rna	5
as	4
degradation	4
gene	4
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splice_factor	1
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upf1	1
worm	1

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