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Recent papers classified by the tag nuts_n_bolts.

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	Response to Yang et al.: Problems with Bayesian methods of detecting positive selection at the DNA sequence level [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 36. (8 September 2009), pp. E96-E96. by Masafumi Nozawa, Yoshiyuki Suzuki, Masatoshi Nei posted to nuts_n_bolts by bpcusack on 2009-09-11 13:14:37 as along with 3 people and 1 group ckenaley stajich maren Mycology
	Reliabilities of identifying positive selection by the branch-site and the site-prediction methods [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6700-6705. by Masafumi Nozawa, Yoshiyuki Suzuki, Masatoshi Nei posted to nuts_n_bolts by bpcusack on 2009-04-06 19:21:21 as along with 8 people and 1 group ckenaley sameersoi djkt rvosa ramiro2k gjuggler atphan gulsacan FAB-lab
	Phylogenetic and functional assessment of orthologs inference projects and methods. [My Copy] PLoS computational biology, Vol. 5, No. 1. (16 January 2009), e1000262. by Adrian M. Altenhoff, Christophe Dessimoz posted to nuts_n_bolts by bpcusack on 2009-01-16 16:48:29 as along with 10 people and 1 group avilella AaronDarling skembel isimpson hpaces natstreet alpae kshameer djkt druvus Ensembl Compara citations
	The Population Genetics of dN/dS [My Copy] PLoS Genet, Vol. 4, No. 12. (12 December 2008), e1000304. by Sergey Kryazhimskiy, Joshua B. Plotkin posted to nuts_n_bolts by bpcusack on 2008-12-28 14:00:13 as along with 17 people and 2 groups michaelbarton operon gjuggler seb1 dposada gwallau ilyashl skembel proulx zwang nuin Zephyrus balicea renewang stajich druvus djkt R.E.A.D Mycology
	OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics [My Copy] BMC Evolutionary Biology, Vol. 7, No. 1. (30 November 2007), 241. by Vincent Ranwez, Frederic Delsuc, Sylvie Ranwez, Khalid Belkhir, Marie K. Tilak, Emmanuel Douzery posted to nuts_n_bolts by bpcusack on 2008-12-10 12:45:06 as along with 4 people and 1 group avilella gjuggler aprasad idonaldson Ensembl Compara citations
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to nuts_n_bolts by bpcusack on 2008-12-01 15:33:26 as along with 20 people and 1 group ucbcjbm pansapiens kiekyon Thaverkamp niallhaslam daforerog Zalanszabo Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	Unpleasant surprises: how the Introduction has wandered into the Discussion. [My Copy] J Cell Biol, Vol. 174, No. 6. (11 September 2006) by W. A. Wells posted to nuts_n_bolts by bpcusack on 2008-09-18 14:39:07 as along with 1 person guhjy
	Me write pretty one day: how to write a good scientific paper. [My Copy] The Journal of cell biology, Vol. 165, No. 6. (21 June 2004), pp. 757-758. by William A. Wells posted to nuts_n_bolts by bpcusack on 2008-09-18 14:37:54 as along with 5 people seb1 wmatsui thor_bjarnason inbetweener guhjy
	Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. [My Copy] J Mol Biol, Vol. 300, No. 4. (21 July 2000), pp. 1005-1016. by O. Emanuelsson, H. Nielsen, S. Brunak, G. von Heijne posted to nuts_n_bolts by bpcusack on 2008-09-17 09:32:42 as along with 4 people and 2 groups nlapalu raiyar ana mloewer structural_bioinformatics Bioinformatics
	Model selection in ecology and evolution [My Copy] Trends in Ecology & Evolution, Vol. 19, No. 2. (February 2004), pp. 101-108. by J Johnson, posted to nuts_n_bolts by bpcusack on 2008-08-06 17:51:33 as along with 16 people and 3 groups roodubh beete mhasoba yonatanf BioNica guhjy mroutley jmeppley almostc e2holmes cmm scis0000001 ajw gareth jasonn hkreysa Savage Lab, UCLA FAB-lab PsychStatsBanter
	Assessing performance of orthology detection strategies applied to eukaryotic genomes. [My Copy] PloS one, Vol. 2, No. 4. (2007) by Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, David S. Roos posted to nuts_n_bolts by bpcusack on 2008-08-05 17:06:33 as along with 16 people and 3 groups rolandkrause dfdong richardbickerton treangen dquest cgaugain druvus icases operon rvosa indigoviolet stajich cjeans winterschlaefer cerca natstreet EisenLab FAB-lab TNT
	Qualifying the relationship between sequence conservation and molecular function [My Copy] Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205. by Gregory M. Cooper, Christopher D. Brown posted to nuts_n_bolts by bpcusack on 2008-07-18 17:16:38 as along with 7 people farhat emptyhb aprasad brant djkt xingxu nklee
	GENOMICS: Lining Up to Avoid Bias [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 416-417. by Antonis Rokas posted to alignment nuts_n_bolts by bpcusack on 2008-07-18 17:05:06 as along with 8 people treangen operon dayjm cjeans lilou dandaman renatomilani gjuggler
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to alignment nuts_n_bolts by bpcusack on 2008-07-18 17:04:44 as along with 33 people and 2 groups Jporci operon walshtp darian ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science In Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to alignment nuts_n_bolts by bpcusack on 2008-07-18 16:50:50 as along with 30 people and 3 groups dfdong memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	BLOSUM62 miscalculations improve search performance [My Copy] Nature Biotechnology, Vol. 26, No. 3., pp. 274-275. by Mark P. Styczynski, Kyle L. Jensen, Isidore Rigoutsos, Gregory Stephanopoulos posted to alignment nuts_n_bolts by bpcusack on 2008-07-18 16:49:31 as along with 5 people jfr dullhunk zwang ptrobajo chad_davis

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