Tag ode [74 articles] Export

Recent papers classified by the tag ode.

	Central role of danger signals in sepsis, trauma, and hemorrhage: insights from mathematical simulations [My Copy] Journal of Critical Care, Vol. 20, No. 4. (December 2005), pp. 390-390. by Y. Vodovotz, T. Billiar, C. Lagoa, et al.J. Bartels, A. Baratt, J. Rubin, M. Fink, G. Clermont posted to simulation_model ode model danger-signal by tomhebbron on 2009-10-30 12:55:26 as
	Another universal differential equation [My Copy] (8 Nov 2002) by Keith Briggs posted to universal_differential_equation ode by Borelli on 2009-10-05 08:46:30 as
	Analysis of a generic model of eukaryotic cell-cycle regulation. [My Copy] Biophysical journal, Vol. 90, No. 12. (15 June 2006), pp. 4361-4379. by Attila Csikász-Nagy, Dorjsuren Battogtokh, Katherine C. Chen, Béla Novák, John J. Tyson posted to theorety regulation ode network modular model framework eukaryotic dynamic cell-cycle bifurcation analysis by bertelsen on 2009-09-04 23:21:33 as along with 3 people johncumbers jbchang Petersarkies
	Investigating the two-moment characterisation of subcellular biochemical networks [My Copy] Journal of Theoretical Biology, Vol. 260, No. 3. (07 October 2009), pp. 340-352. by Mukhtar Ullah, Olaf Wolkenhauer posted to ode master-equation by tinatoni on 2009-09-02 10:22:38 as along with 2 people jjray bertelsen
	Incorporating Existing Network Information into Gene Network Inference [My Copy] PLoS ONE, Vol. 4, No. 8. (27 August 2009), e6799. by Scott Christley, Qing Nie, Xiaohui Xie posted to regulatory_network priors ode gene_network differentially_equations chip_chip by frohike on 2009-08-27 09:18:03 as along with 5 people rdiaz coffeerv tmmurali TRHvidsten installe
	Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 83. by Clemens Kühn, Christoph Wierling, Alexander Kühn, et al.Edda Klipp, Georgia Panopoulou, Hans Lehrach, Albert J. Poustka posted to parameter_estimation ode by agonzale on 2009-08-24 11:16:45 as along with 3 people reyez mjoach abhishek_tiwari
	A mass action model of a Fibroblast Growth Factor signaling pathway and its simplification. [My Copy] Bulletin of mathematical biology, Vol. 70, No. 8. (1 November 2008), pp. 2229-2263. by E. A. Gaffney, J. K. Heath, M. Z. Kwiatkowska posted to ode modeling fgf by agonzale on 2009-08-24 10:46:07 as
	Comparing different ODE modelling approaches for gene regulatory networks [My Copy] Journal of Theoretical Biology, Vol. 261, No. 4. (21 December 2009), pp. 511-530. by A. Polynikis, S. J. Hogan, M. di Bernardo posted to review ode modeling by agonzale on 2009-08-14 06:06:47 as along with 1 person joseph_x_zhou
	A Yeast Synthetic Network for In Vivo Assessment of Reverse-Engineering and Modeling Approaches [My Copy] Cell, Vol. 137, No. 1. (03 April 2009), pp. 172-181. by Irene Cantone, Lucia Marucci, Francesco Iorio, et al.Maria A. Ricci, Vincenzo Belcastro, Mukesh Bansal, Stefania Santini, Mario di Bernardo, Diego di Bernardo, Maria P. Cosma posted to bayesian-network yeast systems_biology reverse_engineering_gene_networks ode mutual_information granger_causality differentially_equations by frohike on 2009-08-13 08:27:32 as along with 8 people and 1 group Borelli absterga coela stasaki behindtherabbit zwang jjray phoenixzxl cube_and_beyond
	Ordinary Differential Equations [My Copy] (26 July 2006) by Vladimir I. Arnol'd posted to ode by NitinCR on 2009-07-30 12:37:58 as
	An HIV feedback resistor: auto-regulatory circuit deactivator and noise buffer. [My Copy] PLoS biology, Vol. 5, No. 1. (26 January 2007) by L. S. Weinberger, T. Shenk posted to hiv modeling ode p300 sirt1 by cannin on 2009-07-16 18:59:12 as along with 2 people jjray aswin
	A central limit theorem via differential equations [My Copy] (23 Jun 2009) by Taral G. Seierstad posted to approximation clt discrete ode by ansobol on 2009-06-24 15:46:10 as
	On flows associated to Sobolev vector fields in Wiener spaces: an approach à la DiPerna-Lions [My Copy] (10 Mar 2008) by Luigi Ambrosio, Alessio Figalli posted to ode transport wiener by ansobol to the group OTARIE on 2009-05-28 08:06:07 as
	Implicit-explicit schemes for fast animation with particle systems [My Copy] In In Eurographics Computer Animation and Simulation Workshop (2000), pp. 137-151. by B. Eberhardt, O. Etzmuß, M. Hauth posted to animation implicit-scheme ode particle-systems real-time by ben500 on 2009-04-03 17:27:20 as
	Asymptotic efficiency and finite-sample properties of the generalized profiling estimation of the parameters in ordinary differential equations [My Copy] (19 Mar 2009) by Xin Qi, Hongyu Zhao posted to arxiv ode by dah on 2009-03-20 10:00:10 as
	Collocation Methods for Singular Boundary Value Problems [My Copy] SIAM Journal on Numerical Analysis, Vol. 15, No. 1. (1978), pp. 198-217. by Frank R. De Hoog, Richard Weiss posted to bvp collocation numerical ode singular by jeevanjyoti on 2009-03-15 04:18:09 as
	Collocation for Singular Boundary Value Problems of Second Order [My Copy] SIAM Journal on Numerical Analysis, Vol. 23, No. 5. (1986), pp. 1062-1095. by Ewa Weinmüller posted to bvp collocation numerical ode by jeevanjyoti on 2009-03-15 04:17:05 as
	Evaluation of real-time physics simulation systems [My Copy] In GRAPHITE '07: Proceedings of the 5th international conference on Computer graphics and interactive techniques in Australia and Southeast Asia (2007), pp. 281-288. by Adrian Boeing, Thomas Bräunl posted to ode physics review simulation by mjoach on 2009-03-04 14:46:43 as along with 3 people MarcH alucchi maburkitt
	Behavioral and brain pattern differences between acting and observing in an auditory task [My Copy] Behavioral and Brain Functions, Vol. 5 (20 January 2009), 5. by Irene, Nikolaos K. Uzunoglu posted to ba ode by thoma on 2009-02-12 11:17:07 as
	Reconstruction of transcriptional dynamics from gene reporter data using differential equations. [My Copy] Bioinformatics, Vol. 24, No. 24. (30 October 2008), pp. 2901-2907. by B. Finkenstädt, E. A. Heron, M. Komorowski, et al.K. Edwards, S. Tang, C. V. Harper, J. R. E. Davis, M. R. H. White, A. J. Millar, D. A. Rand posted to ode parameter_estimation by agonzale on 2009-02-08 00:32:34 as along with 3 people kentz Borelli guhjy
	Fitting ordinary differential equations to short time course data [My Copy] Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 366, No. 1865. (28 February 2008), pp. 519-544. by Daniel Brewer, Martino Barenco, Robin Callard, Michael Hubank, Jaroslav Stark posted to ode parameter_estimation by agonzale on 2009-02-08 00:16:07 as
	Bifurcation analysis informs Bayesian inference in the Hes1 feedback loop [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009) by Catherine Higham posted to bayesian bifurcation computational estimation expression gene modeling monte-carlo ode paramter by behindtherabbit on 2009-01-29 22:53:35 as along with 2 people agonzale colinDotAIBN
	Discontinuous Dynamical Systems: A tutorial on solutions, nonsmooth analysis, and stability [My Copy] (23 Jan 2009) by Jorge Cortes posted to dynamical-system nonsmooth ode by ansobol on 2009-01-26 20:16:45 as along with 3 people ameetdesh algorithmic jleny
	Integrating biosystem models using waveform relaxation. [My Copy] EURASIP journal on bioinformatics & systems biology (2008) by L. Li, R. M. Seymour, S. Baigent posted to ode systems-biology by sjcockell on 2009-01-16 09:42:54 as
	Parameter estimation of ODE's via nonparametric estimators [My Copy] (22 Dec 2008) by Nicolas J. B. Brunel posted to arxiv inverse_problem ode by dah on 2008-12-24 14:38:37 as
	Factorization and transformations of linear and nonlinear ordinary differential equations [My Copy] Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 502, No. 2-3. (21 April 2003), pp. 646-648. by L. Berkovich posted to num_math ode by citemyface on 2008-12-19 18:29:14 as
	An Introduction to Ordinary Differential Equations [My Copy] (29 July 2008) by Ravi P. Agarwal, Donal O'Regan posted to ode by NitinCR on 2008-12-13 12:27:15 as
	Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i70-75. by Pei Gao, Antti Honkela, Magnus Rattray, Neil D. Lawrence posted to analysis latent microarray modeling ode transcription-factor uncertainty by bertelsen on 2008-11-19 12:44:09 as
	Numerical analysis of the master equation [My Copy] (26 Oct 2001) by Ronald Dickman posted to markov master_equation ode by rblake on 2008-10-30 21:49:43 as
	A First Course in Differential Equations [My Copy] (14 May 2008) by Dennis G. Zill posted to book ode pde by jjrohal on 2008-10-01 05:35:25 as
	The use of genetic algorithms for the development of sensorimotor control systems [My Copy] From Perception to Action Conference, 1994., Proceedings In From Perception to Action Conference, 1994., Proceedings (1994), pp. 110-121. by P. Husbands, I. Harvey, D. Cliff, G. Miller posted to 94 ga genetic-algorithm neuroevolution ode by mahmoodr on 2008-08-08 11:15:56 as
	Mathematical Models In Biology [My Copy] (01 January 1988) by Leah Edelstein-Keshet posted to biology math modelling ode by sstoma to the group VirtualPlants on 2008-07-07 18:33:23 as
	Towards a Theory of Chaos Explained as Travel on Riemann Surfaces [My Copy] (27 May 2008) by F. Calogero, D. Gomez-Ullate, P. Santini, M. Sommacal posted to chaos complex-variable dynamical-system ode riemann-surface-complex by ansobol on 2008-06-15 09:59:45 as
	Transport equation: extension of classical results for div $b∈$ BMO [My Copy] (11 Jun 2008) by Piotr B. Mucha posted to nonsmooth ode pde transport by ansobol on 2008-06-15 09:19:00 as
	Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405. by D. E. Zak, G. E. Gonye, J. S. Schwaber, F. J. Doyle posted to modelling ode systemsbiology by lukaswindhager on 2008-05-09 12:18:47 as along with 5 people ryang wnpx jrbanga bertelsen aheilbut
	Analysis of global control of Escherichia coli carbohydrate uptake. [My Copy] BMC systems biology, Vol. 1, No. 42. (2007) by A. Kremling, K. Bettenbrock, E. D. Gilles posted to modelling ode systemsbiology by lukaswindhager on 2008-05-08 16:46:27 as
	Modelling the dynamics of the yeast pheromone pathway. [My Copy] Yeast, Vol. 21, No. 10. (30 July 2004), pp. 831-850. by B. Kofahl, E. Klipp posted to modelling ode pheromone systemsbiology yeast by lukaswindhager on 2008-05-08 14:59:16 as along with 2 people tmt pmendes
	Understanding NF-[kappa]B signaling via mathematical modeling [My Copy] Mol Syst Biol, Vol. 4 (6 May 2008) by Raymond Cheong, Alexander Hoffmann, Andre Levchenko posted to modelling ode signaling by renatomilani on 2008-05-07 19:47:16 as along with 3 people guhjy ptrobajo Borelli
	Parameter estimation of high-dimensional linear differential equations [My Copy] (27 Apr 2008) by Heng Lian posted to arxiv lasso ode parameter_estimation scad sysbio by dah on 2008-04-29 09:55:51 as
	Integration of Stiff Equations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 38, No. 3. (March 1952), pp. 235-243. by C. F. Curtiss, J. O. Hirschfelder posted to math numerical ode sstoma by sstoma to the group VirtualPlants on 2008-04-09 13:43:55 as
	A comparison of non-standard solvers for ODEs describing cellular reactions in the heart [My Copy] Computer Methods in Biomechanics and Biomedical Engineering, Vol. 10, No. 5. (October 2007), pp. 317-326. by Maclachlan, Mary, Sundnes, Joakim, Spiteri, Raymond posted to implicit nsfd ode by plank on 2008-04-08 10:00:48 as along with 1 person vgurev
	Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws1 [My Copy] Progress in Biophysics and Molecular Biology*, Vol. 85, No. 2-3. (July 2004), pp. 235-260. by S. Schnell posted to crowding ode rates simulation by ras on 2008-03-19 18:17:49 as along with 5 people and 1 group mhellmann gabe_rosser m_j schnell csanford IU_Informatics_CX
	Numerical Algorithms with C [My Copy] (02 July 1996) by Giesela Engeln-Müllges, Frank Uhlig posted to algorithm integration leapfrog numeric ode predictor-corrector runge-kutta step verlet by michaelbussmann on 2008-02-28 15:44:54 as
	Introduction to the Galois Theory of Linear Differential Equations [My Copy] (26 Dec 2007) by Michael F. Singer posted to algebra algorithm category-theory linear-equation ode by ansobol on 2007-12-28 09:05:11 as along with 4 people pqnelson yakovenko jrw proportional
	Towards a new ODE-solver based on Cartan's method [My Copy] (30 Nov 2007) by Raouf Dridi, Michel Petitot posted to numerical ode by ansobol on 2007-12-04 19:20:47 as
	Simulating cell biology. [My Copy] Curr Biol, Vol. 16, No. 14. (25 July 2006) by S. S. Andrews, A. P. Arkin posted to ode simulation_algorithms by dagmar on 2007-11-26 17:06:33 as along with 1 person heliopais
	Uniqueness of the particle trajectories of the weak solutions of the two-dimensional Navier-Stokes equations [My Copy] (30 Oct 2007) by Masoumeh Dashti, James C. Robinson posted to 2d navier-stokes nonsmooth ode by ansobol on 2007-11-01 11:23:49 as
	Linearizable ordinary differential equations [My Copy] (26 Oct 2007) by Hector Giacomini, Jaume Gine, Maite Grau posted to integrable linear ode by ansobol on 2007-10-30 19:46:02 as along with 1 person yakovenko
	Automatic Selection of Methods for Solving Stiff and Nonstiff Systems of Ordinary Differential Equations [My Copy] SIAM Journal on Scientific and Statistical Computing, Vol. 4, No. 1. (1983), pp. 136-148. by Linda Petzold posted to copasi kisao ode simulation_algorithms by dagmar to the group compneur on 2007-10-30 17:32:57 as along with 3 people jjray muraken pmendes
	LSODE and LSODI, two new initial value ordinary differnetial equation solvers [My Copy] SIGNUM Newsl., Vol. 15, No. 4. (December 1980), pp. 10-11. by Alan C. Hindmarsh posted to ode simulation_algorithms by dagmar on 2007-10-16 13:32:48 as along with 1 person muraken

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