Tag oligonucleotide [70 articles] Export

Recent papers classified by the tag oligonucleotide.

	Linear model for fast background subtraction in oligonucleotide microarrays [My Copy] Algorithms for Molecular Biology, Vol. 4, No. 1. (2009), 15. by K. Myriam Kroll, Gerard Barkema, Enrico Carlon posted to software preprocessing oligonucleotide model microarray linear background algorithm by bertelsen on 2009-11-23 22:04:40 as along with 1 person renatomilani
	Combining chromatin immunoprecipitation and oligonucleotide tiling arrays (ChIP-Chip) for functional genomic studies. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 556 (2009), pp. 155-164. by Jérôme Eeckhoute, Mathieu Lupien, Myles Brown posted to tiling systems-biology oligonucleotide microarray functional-genomics chromatin chip-chip array by bertelsen on 2009-11-18 22:43:10 as
	OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity. [My Copy] BMC proceedings, Vol. 3 Suppl 4 (2009) by Pieter Bt B. Neerincx, Han Rauwerda, Haisheng Nie, Martien Am A. Groenen, Timo M. Breit, Jack Am A. Leunissen posted to webservices tool target specificity pipelines oligonucleotide microarray high-throughput annotation by bertelsen on 2009-10-28 12:07:39 as
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to standalone_tool oligonucleotide alignment by jforment to the group Bioinformatics Core Service on 2009-10-20 17:07:45 as along with 28 people and 5 groups darian nuin hzoltan agbiotec torfinnnome natstreet cthachuk GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	Comparative genomic hybridization on spotted oligonucleotide microarrays. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 556 (2009), pp. 21-32. by Young H. Kim, Jonathan R. Pollack posted to review oligonucleotide cgh by rdiaz on 2009-09-15 17:48:07 as
	Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species. [My Copy] Plant methods, Vol. 1, No. 1. (2005) by John P. Hammond, Martin R. Broadley, David J. Craigon, et al.Janet Higgins, Zoe F. Emmerson, Henrik J. Townsend, Philip J. White, Sean T. May posted to probe-selection probe oligonucleotide microarray heterologous genechip dna affymetrix by bertelsen on 2009-09-03 15:21:44 as along with 1 person natstreet
	Preprocessing of oligonucleotide array data [My Copy] Nat Biotech, Vol. 22, No. 6. (June 2004), pp. 656-658. by Zhijin Wu, Rafael A. Irizarry posted to background microarray oligonucleotide preprocessing by bertelsen on 2009-06-24 14:14:51 as along with 2 people RMGraze nicholso
	Normalization of oligonucleotide arrays based on the least-variantset of genes [My Copy] BMC Bioinformatics, Vol. 9 (05 March 2008), 140. by Stefano Calza, Davide Valentini, Yudi Pawitan posted to microarray normalization oligonucleotide by bertelsen on 2009-06-23 11:39:36 as along with 5 people waszak guhjy jfr giovenko GeeSharpMinor
	Synthesis and Biodistribution of Oligonucleotide-Functionalized, Tumor-Targetable Carbon Nanotubes [My Copy] Nano Letters, Vol. 8, No. 12. (10 December 2008), pp. 4221-4228. by Carlos H. Villa, Michael R. Mcdevitt, Freddy E. Escorcia, et al.Diego A. Rey, Magnus Bergkvist, Carl A. Batt, David A. Scheinberg posted to 111in biodistribution in-vivo nanotube oligonucleotide radioisotope by ml115 on 2009-06-18 20:42:42 as
	High density synthetic oligonucleotide arrays. [My Copy] Nat Genet, Vol. 21, No. 1 Suppl. (January 1999), pp. 20-24. by R. J. Lipshutz, S. P. Fodor, T. R. Gingeras, D. J. Lockhart posted to affymetrix array experiment genechip genomics high-throughput microarray oligonucleotide by bertelsen on 2009-06-16 15:21:29 as along with 3 people and 1 group jeremymiller incovoma shikin GeschwindLab
	Rejoinder [My Copy] Technometrics, Vol. 50, No. 3. (August 2008), pp. 279-283. by Julia Brettschneider, Francois Collin, Benjamin M. Bolstad, Terence P. Speed posted to microarray oligonucleotide quality-assessment quality-control by bertelsen on 2009-06-16 12:56:44 as
	Quality Assessment for Short Oligonucleotide Microarray Data [My Copy] Technometrics, Vol. 50, No. 3. (August 2008), pp. 241-264. by Julia Brettschneider, Francois Collin, Benjamin M. Bolstad, Terence P. Speed posted to microarray oligonucleotide quality-assessment quality-control by bertelsen on 2009-06-16 12:52:25 as
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to alignment genome human oligonucleotide promoter software by bertelsen on 2009-03-27 15:47:22 as along with 39 people and 4 groups oannes mijam nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd polivares torfinnnome n00c talponer jmcq rschulz ghattem operon humburg idonaldson mmartin skembel dquest heliopais djkt GeeSharpMinor darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	Differentiation of regions with atypical oligonucleotide composition in bacterial genomes [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Oleg Reva, Burkhard Tummler posted to oligonucleotide usage by msuarezdiez on 2009-03-24 15:29:36 as along with 1 person karfunkel
	Thermal equivalence of DNA duplexes for probe design [My Copy] Journal of Physics: Condensed Matter, Vol. 21, No. 3. (2009), 034106. by Gerald Weber, Niall Haslam, Jonathan W. Essex, Cameron Neylon posted to dna-melting genotyping melting microarray microarrays oligonucleotide probe-design probe-selection reassembly resequencing temperature thermal-equivalence thermodynamics by niallhaslam on 2009-01-07 15:13:09 as along with 1 person CameronNeylon
	Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes [My Copy] PLoS Comput Biol, Vol. 4, No. 4. (18 April 2008), e1000057. by Jon Bohlin, Eystein Skjerve, David W. Ussery posted to compoosition gc oligonucleotide prokaryote by treangen on 2008-11-26 13:16:27 as along with 4 people and 2 groups dakelley michaelbarton djkt jlgreen iSEEM Green Lab
	Experimental analysis of oligonucleotide microarray design criteria to detect deletions by comparative genomic hybridization [My Copy] BMC Genomics, Vol. 9 (21 October 2008), 497. by Stephane Flibotte, Donald G. Moerman posted to analysis cgh deletions design microarray oligonucleotide by dswan on 2008-11-17 10:36:25 as along with 3 people GeeSharpMinor druvus natstreet
	In silico microarray probe design for diagnosis of multiple pathogens [My Copy] BMC Genomics, Vol. 9, No. 1. (21 October 2008), 496. by Ravi V. Satya, Nela Zavaljevski, Kamal Kumar, et al.Elizabeth Bode, Susana Padilla, Leonard Wasieloski, Jeanne Geyer, Jaques Reifman posted to assay bhsai bioanalysis bioinformatics diagnostic dna fingerprint kamal kumar microarray oligonucleotide by kamalkumar on 2008-11-14 15:30:58 as along with 1 person druvus
	Novel method for immobilization of enzymes to magnetic nanoparticles [My Copy] Journal of Nanoparticle Research, Vol. 10, No. 6. (2008), pp. 1009-1025. by Andrew Johnson, Anna Zawadzka, Lee Deobald, Ronald Crawford, Andrzej Paszczynski posted to enzyme iron-oxide-affinity-peptide oligonucleotide scanning-electron-microscopy silica-affinity-peptide silica-coat superparamagnetic-iron-oxide-nanoparticle by ml115 on 2008-08-08 21:05:28 as
	Diversity of Oligonucleotide Functions [My Copy] Annual Review of Biochemistry, Vol. 64, No. 1. (1995), pp. 763-797. by L. Gold, B. Polisky, O. Uhlenbeck, M. Yarus posted to dna ligands oligonucleotide protein rna selex structure by jonathanjacobs on 2008-06-23 16:20:18 as
	Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (24 May 2007), 174. by Davide Cora', Ferdinando Di Cunto, Michele Caselle, Paolo Provero posted to 3-utr analysis distribution mammalian oligonucleotide regulation sequence statistical by bertelsen on 2008-06-12 23:40:34 as along with 4 people and 2 groups andersbj mtagaya GustavoLacerda nuin Bioinformatics microRNA
	A comparison of normalization methods for high density oligonucleotide array data based on variance and bias [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 185-193. by B. M. Bolstad, R. A. Irizarry, M. Astrand, T. P. Speed posted to array microarray normalization oligonucleotide by bertelsen on 2008-06-04 23:06:07 as along with 24 people frohike lwaldron jperkins vplagnol brianb neils ipark-kaist shikin michaelbarton emptyhb noushin huiminC cassj Dax42 pcahan1 chad_davis RMGraze gjuggler filmsternchen qmwwallace joepickrell ghattem vertikalist GeeSharpMinor
	SELEX—A (r)evolutionary method to generate high-affinity nucleic acid ligands [My Copy] Biomolecular Engineering, Vol. 24, No. 4. (October 2007), pp. 381-403. by R. Stoltenburg, C. Reinemann, B. Strehlitz posted to affinity aptamer dna evolution ligands molecular oligonucleotide polymerase protein proteomics research rna science selection selex by jonathanjacobs on 2008-05-14 18:48:28 as along with 8 people emmahe dbikard cambray Vincent_Rouilly jec105 kuaaaaa erdos guhjy
	Microarray oligonucleotide probes. [My Copy] Methods in enzymology, Vol. 410 (2006), pp. 73-98. by D. P. Kreil, R. R. Russell, S. Russell posted to design microarray oligonucleotide probe review by bertelsen on 2008-04-29 21:44:55 as
	A model of molecular interactions on short oligonucleotide microarrays. [My Copy] Nat Biotechnol, Vol. 21, No. 7. (July 2003), pp. 818-821. by L. Zhang, M. F. Miles, K. D. Aldape posted to interactions microarray model molecular oligonucleotide by bertelsen on 2008-04-29 10:13:20 as along with 4 people Hosna caseybrown nicholso talponer
	Free energy of DNA duplex formation on short oligonucleotide microarrays [My Copy] Nucleic Acids Research, Vol. 35, No. 3. (February 2007), pp. e18-e18. by Zhang, Li, Wu, et al. Chunlei, Carta, Roberto, Zhao, Haitao posted to hybridization microarray oligonucleotide by bertelsen on 2008-04-29 08:09:33 as along with 1 person stsaft
	A systematic statistical linear modeling approach to oligonucleotide array experiments [My Copy] Mathematical Biosciences, Vol. 176, No. 1. (March 2002), pp. 35-51. by Tzu-Ming Chu, Bruce Weir, Russ Wolfinger posted to array linear microarray modeling oligonucleotide probe statistical by bertelsen on 2008-04-29 00:00:54 as along with 1 person maryee
	Sequence dependence of cross-hybridization on short oligo microarrays [My Copy] Nucleic Acids Research, Vol. 33, No. 9. (2005), pp. e84-e84. by Chunlei Wu, Roberto Carta, Li Zhang posted to cross-hybridization dependence microarray oligonucleotide sequence by bertelsen on 2008-04-28 23:34:36 as
	A Model-Based Background Adjustment for Oligonucleotide Expression Arrays [My Copy] Journal of the American Statistical Association, Vol. 99, No. 468., 909. by Zhijin Wu, Rafael A. Irizarry, Robert Gentleman, Francisco Martinez-Murillo, Forrest Spencer posted to adjustment array background expression gcrma microarray model oligonucleotide probe-level by bertelsen on 2008-04-28 22:44:55 as along with 9 people and 1 group jperkins schwalb shikin karinlag GeeSharpMinor RMGraze thomlo nicholso jo_davies GeneGo
	Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 1. (2 January 2001), pp. 31-36. by Cheng Li, Wing H. Wong posted to expression index microarray model oligonucleotide by bertelsen on 2008-04-28 22:28:27 as along with 3 people humburg svozil RMGraze
	Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays [My Copy] BMC Bioinformatics, Vol. 8 (29 March 2007), 108. by Jun Lu, Joseph C. Lee, Marc L. Salit, Margaret C. Cam posted to annotation high-resolution microarray oligonucleotide probe transcript by bertelsen on 2008-04-28 22:15:44 as along with 5 people and 1 group heliopais guhjy jfr frohike ghattem Bioinformatics
	Molecular biomarkers of oxidative stress associated with bromate carcinogenicity. [My Copy] Toxicology, Vol. 221, No. 2-3. (17 April 2006), pp. 158-165. by D. Delker, G. Hatch, J. Allen, et al.B. Crissman, M. George, D. Geter, S. Kilburn, T. Moore, G. Nelson, B. Roop, R. Slade, A. Swank, W. Ward, A. DeAngelo posted to analysis array bromates carcinogens oligonucleotide potassiumbromate sequence by medref2 on 2008-04-07 16:10:24 as
	Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. [My Copy] Genome biology, Vol. 2, No. 8. (2001), pp. research0032.1-research0032.11. by Cheng Li, Wing H. Wong posted to array design mbei microarray model oligonucleotide by bertelsen on 2008-03-14 15:58:50 as along with 4 people and 1 group jperkins RMGraze fisherp jeremymiller GeschwindLab
	A semi-rational design strategy of directed evolution combined with chemical synthesis of DNA sequences. [My Copy] Biol Chem, Vol. 388, No. 12. (December 2007), pp. 1291-1300. by A. S. Xiong, R. H. Peng, J. Zhuang, et al.J. G. Liu, F. Gao, F. Xu, B. Cai, Q. H. Yao posted to design microarray oligonucleotide resequencing resistance sequencing by niallhaslam on 2008-02-14 10:45:34 as
	Correction of the Mutation Responsible for Sickle Cell Anemia by an RNA-DNA Oligonucleotide [My Copy] Science, Vol. 273, No. 5280. (6 September 1996), pp. 1386-1389. by Allyson Cole-Strauss, Kyonggeun Yoon, Yufei Xiang, et al.Bruce C. Byrne, Michael C. Rice, Jeff Gryn, William K. Holloman, Eric B. Kmiec posted to chimeric oligonucleotide rnadna by benlin on 2008-02-11 00:44:16 as
	Targeted gene correction of episomal DNA in mammalian cells mediated by a chimeric RNA·DNA oligonucleotide [My Copy] Proceedings of the National Academy of Sciences, Vol. 93, No. 5. (5 March 1996), pp. 2071-2076. by Kyonggeun Yoon, Allyson Cole-Strauss, Eric B. Kmiec posted to chimeric oligonucleotide rnadna by benlin on 2008-02-11 00:43:54 as
	Microarray-based DNA resequencing using 3' blocked primers. [My Copy] Anal Biochem (4 November 2007) by Jakub Sram, Steve S S. Sommer, Qiang Liu posted to design microarray oligonucleotide resequencing by niallhaslam on 2007-12-03 10:17:56 as along with 1 person guhjy
	Probe selection for DNA microarrays using OligoWiz. [My Copy] Nat Protoc, Vol. 2, No. 11. (2007), pp. 2677-2691. by R. Wernersson, A. S. Juncker, H. B. Nielsen posted to microarray oligonucleotide probe-design probe-selection signal-intensity by niallhaslam on 2007-11-29 10:33:36 as along with 2 people daforerog stsaft
	Extending microarray quality control and analysis algorithms to illumina chip platform. [My Copy] Conf Proc IEEE Eng Med Biol Soc, Vol. 1 (2007), pp. 4637-4640. by T. H. Stokes, X. Han, R. A. Moffitt, M. D. Wang posted to affymetrix hybridisation illumina microarray oligonucleotide primer-design signal-intensity temperature thermodynamics by niallhaslam on 2007-11-29 10:31:45 as along with 1 person flexer
	Thermodynamic Behavior of Short Oligonucleotides in Microarray Hybridizations Can Be Described Using Gibbs Free Energy in a Nearest-Neighbor Model. [My Copy] J Phys Chem B (10 November 2007) by Stefan Weckx, Enrico Carlon, Luc D. Vuyst, Paul V. Hummelen posted to affymetrix design melting oligonucleotide sequencing short-read signal-intensity temperature thermodynamics by niallhaslam on 2007-11-29 10:28:54 as
	Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2566-2572. by Chunlei Wu, Haitao Zhao, Keith Baggerly, Roberto Carta, Li Zhang posted to interactions microarray oligonucleotide short-read signal-intensity by niallhaslam on 2007-11-12 09:59:53 as along with 1 person jfr
	A general approach for the use of oligonucleotide effectors to regulate the catalysis of RNA-cleaving ribozymes and DNAzymes [My Copy] Nucl. Acids Res., Vol. 30, No. 8. (15 April 2002), pp. 1735-1742. by Dennis Y. Wang, Beatrice H. Lai, Anat R. Feldman, Dipankar Sen posted to aptamer catalysis dna dnazyme effector oligonucleotide ribozyme rna by eckart_bindewald on 2007-11-06 16:20:55 as
	Primer design for multiplexed genotyping. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 402 (2007), pp. 269-286. by L. Kaderali posted to microarray oligonucleotide primer-design resequencing sequencing design by niallhaslam on 2007-10-25 09:17:10 as
	Specific and non specific hybridization of oligonucleotide probes on microarrays [My Copy] Biophys. J. (15 April 2005), biophysj.104.055343. by Hans Binder, Stephan Preibisch posted to microarray oligonucleotide signal-intensity by niallhaslam on 2007-10-03 15:31:54 as along with 1 person ptrobajo
	Primique: automatic design of specific PCR primers for each sequence in a family [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Jakob Fredslund, Mette Lange posted to microarray oligonucleotide primer-design by niallhaslam on 2007-10-03 14:47:45 as along with 2 people druvus guhjy
	Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by Agnes Baross, Allen D. Delaney, H. Irene Li, et al.Tarun Nayar, Stephane Flibotte, Hong Qian, Susanna Y. Chan, Jennifer Asano, Adrian Ally, Manqiu Cao, Patricia Birch, Mabel Brown-John, Nicole Fernandes, Anne Go, Giulia Kennedy, Sylvie Langlois, Patrice Eydoux, J. M. Friedman, Marco A. Marra posted to microarray oligonucleotide by niallhaslam on 2007-10-03 14:46:54 as along with 2 people daforerog jfr
	Improving comparability between microarray probe signals by thermodynamic intensity correction. [My Copy] Nucleic Acids Res (2 March 2007) by Georg M M. Bruun, Rasmus Wernersson, Agnieszka S S. Juncker, Hanni Willenbrock, Henrik Bjørn B. Nielsen posted to microarray oligonucleotide signal-intensity by niallhaslam on 2007-10-03 13:48:54 as along with 5 people guhjy ghattem GeeSharpMinor talponer waszak
	Analysis of probe level patterns in Affymetrix microarray data [My Copy] BMC Bioinformatics, Vol. 8 (04 May 2007), 146. by Alexander C. Cambon, Abdelnaby Khalyfa, Nigel G. F. Cooper, Caryn M. Thompson posted to microarray oligonucleotide signal-intensity by niallhaslam on 2007-10-03 13:48:36 as along with 4 people jfr ghattem bertelsen ptrobajo
	An algorithm and program for finding sequence specific oligonucleotide probes for species identification. [My Copy] BMC Bioinformatics, Vol. 3 (2002) by A. E. Pozhitkov, D. Tautz posted to microarray oligonucleotide by niallhaslam on 2007-10-03 13:35:16 as
	Oligonucleotide microarrays: widely applied poorly understood [My Copy] Brief Funct Genomic Proteomic, Vol. 6, No. 2. (1 June 2007), pp. 141-148. by Alex E. Pozhitkov, Diethard Tautz, Peter A. Noble posted to microarray oligonucleotide signal-intensity by niallhaslam on 2007-10-03 13:34:08 as along with 2 people Vincent_Rouilly jfr

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microarray	52
array	23
expression	16
analysis	15
sequence	15
gene	13
design	10
profiling	10
dna	9
signal-intensity	9
model	8
background	7
humans	7
software	7
affymetrix	6
probe	6
animals	5
databases	5
normalization	5
regulation	5
resequencing	5
rna	5
algorithms	4
alignment	4
genetic	4
melting	4
polymerase	4
preprocessing	4
protein	4
quality-assessment	4
quality-control	4
sequencing	4
temperature	4
cattle	3
chain	3
factual	3
female	3
gcrma	3
genechip	3
genome	3
high-throughput	3
hybridisation	3
hybridization	3
information	3
linear	3
molecular	3
primer-design	3
probe-selection	3
reaction	3
reverse	3
statistical	3
statistics	3
thermodynamics	3
transcriptase	3
affinity	2
annotation	2
aptamer	2
biology	2
cells	2
cgh	2
chimeric	2
chip-chip	2
chromatin	2
computational	2
data	2
endometrium	2
experiment	2
genes	2
genomics	2
human	2
in	2
index	2
interactions	2
ligands	2
medline	2
messenger	2
mining	2
models	2
of	2
probe-design	2
probe-level	2
promoter	2
reproducibility	2
research	2
results	2
retrieval	2
review	2
rnadna	2
sam	2
science	2
selex	2
short-read	2
situ	2
specificity	2
standalone_tool	2
storage	2
systems-biology	2
techniques	2
text	2
tiling	2

Tag oligonucleotide [70 articles] Export

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