Tag orthologs [28 articles] Export

Recent papers classified by the tag orthologs.

	BranchClust: a phylogenetic algorithm for selecting gene families [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (10 April 2007), 120. by Maria Poptsova, J. Peter Gogarten posted to phylogenomics phylogenetics orthologs family classification bioinformatics algorithm by robfsouza on 2009-12-02 21:09:37 as along with 5 people and 2 groups GustavoLacerda cgaugain dandaman rvosa stajich FAB-lab Mycology
	Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea. [My Copy] Biology direct, Vol. 4, No. 1. (14 October 2009) by Fabian Blombach, Kira S. Makarova, Jeannette Marrero, Bettina Siebers, Eugene V. Koonin, John van der Oost posted to rna_polymerases rna_polymerase_ii orthologs eukaryotic_rna_polymerase by ppgardne to the group Journal picks on 2009-10-16 13:00:02 as
	Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse. [My Copy] Genome research, Vol. 14, No. 10A. (October 2004), pp. 1870-1879. by Lukasz Huminiecki, Kenneth H. Wolfe posted to orthologs mouse_human inparalogs gene_expression_analysis by aktas on 2009-10-01 10:21:23 as along with 2 people jeremymiller dchughes
	Analyses of human-chimpanzee orthologous gene pairs to explore evolutionary hypotheses of aging. [My Copy] Mechanisms of ageing and development, Vol. 128, No. 5-6. (n 2007), pp. 355-364. by João Pedro P. de Magalhães, George M. Church posted to orthologs human genomics comparative chimpanzee aging by greg on 2009-09-27 22:26:15 as
	How confident can we be that orthologs are similar, but paralogs differ? [My Copy] Trends in Genetics, Vol. 25, No. 5. (13 May 2009), pp. 210-216. by Romain A. Studer, Marc Robinson-Rechavi posted to toblog paralogs orthologs evolution by idoerg on 2009-09-24 17:10:47 as along with 9 people and 1 group aceol dchughes natstreet druvus kshameer GustavoLacerda kiekyon gjuggler stajich Mycology
	OrthoSelect: a protocol for selecting orthologous groups in phylogenomics [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (16 July 2009), 219. by Fabian Schreiber, Kerstin Pick, Dirk Erpenbeck, Gert Worheide, Burkhard Morgenstern posted to selection phylogenomics orthologs by nuin on 2009-09-11 02:35:22 as along with 7 people operon Keywan GustavoLacerda zarskyv natstreet aprasad druvus
	Ortholog detection using the reciprocal smallest distance algorithm. [My Copy] Methods Mol Biol, Vol. 396 (2007), pp. 95-110. by D. P. Wall, T. Deluca posted to phylogeny orthologs evolution bioinformatics by pansapiens on 2009-09-03 23:32:47 as along with 4 people maximilianh dquest operon cerca
	The National Center for Biotechnology Information's Protein Clusters Database. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by W. Klimke, R. Agarwala, A. Badretdin, et al.S. Chetvernin, S. Ciufo, B. Fedorov, B. Kiryutin, K. O'Neill, W. Resch, S. Resenchuk, S. Schafer, I. Tolstoy, T. Tatusova posted to clusterings conserved_modules orthologs software by saket on 2009-06-01 20:46:26 as along with 1 person guhjy
	The MicrobesOnline Web site for comparative genomics. [My Copy] Genome Res, Vol. 15, No. 7. (July 2005), pp. 1015-1022. by E. J. Alm, K. H. Huang, M. N. Price, et al.R. P. Koche, K. Keller, I. L. Dubchak, A. P. Arkin posted to database microbiology orthologs by idoerg on 2009-03-27 07:47:56 as along with 1 person skato_toyaku
	Two Arabidopsis orthologs of the transcriptional coactivator ADA2 have distinct biological functions [My Copy] Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. 1789, No. 2. (February 2009), pp. 117-124. by A. Hark, K. Vlachonasios, K. Pavangadkar, et al.S. Rao, H. Gordon, I. Adamakis, A. Kaldis, M. Thomashow, S. Triezenberg posted to orthologs by cmzmasek on 2009-03-11 18:07:15 as
	Assessing performance of orthology detection strategies applied to eukaryotic genomes. [My Copy] PloS one, Vol. 2, No. 4. (2007) by Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, David S. Roos posted to clustering orthologs by treangen on 2009-03-05 18:53:17 as along with 16 people and 3 groups rolandkrause dfdong richardbickerton dquest cgaugain druvus icases operon rvosa indigoviolet stajich cjeans winterschlaefer bpcusack cerca natstreet EisenLab FAB-lab TNT
	Phylogenetic and functional assessment of orthologs inference projects and methods. [My Copy] PLoS computational biology, Vol. 5, No. 1. (16 January 2009), e1000262. by Adrian M. Altenhoff, Christophe Dessimoz posted to orthologs phylogenetics phylogenomics by skembel on 2009-03-04 00:40:18 as along with 10 people and 1 group avilella AaronDarling isimpson hpaces natstreet alpae kshameer djkt bpcusack druvus Ensembl Compara citations
	Orthologs, paralogs, and evolutionary genomics. [My Copy] Annual review of genetics, Vol. 39, No. 1. (2005), pp. 309-338. by Eugene V. Koonin posted to orthologs orthology_inference by cmzmasek on 2009-02-02 21:18:50 as along with 9 people and 3 groups PolymeraseI gjuggler aprasad dchughes penka jdiezperezj fhsantanna BioNica cerca Nie G4ID Genetics-of-Gambling
	Benchmarking ortholog identification methods using functional genomics data. [My Copy] Genome Biol, Vol. 7, No. 4. (13 April 2006) by Tim Hulsen, Martijn A. Huynen, Jacob de Vlieg, Peter M. Groenen posted to orthologs orthologs_databases orthology_inference by cmzmasek on 2009-01-29 03:51:47 as along with 8 people and 1 group nlapalu operon indigoviolet bluto bootsy alpae tmmurali cerca EisenLab
	OMA Browser Exploring orthologous relations across 352 complete genomes [My Copy] Bioinformatics In Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2180-2182. by Adrian Schneider, Christophe Dessimoz, Gaston H. Gonnet posted to orthologs orthologs_databases by cmzmasek on 2009-01-28 23:41:16 as along with 7 people and 1 group dfdong avilella natstreet druvus treangen guhjy grahamc Ensembl Compara citations
	The quest for orthologs: finding the corresponding gene across genomes [My Copy] Trends in Genetics, Vol. 24, No. 11. (24 November 2008), pp. 539-551. by A. Kuzniar, R. Vanham, S. Pongor, J. Leunissen posted to orthologs review by carlk on 2008-12-14 18:29:27 as along with 13 people kiekyon maximilianh Thaverkamp orzenil kshameer guhjy natstreet druvus treangen skembel gjuggler dchughes operon
	Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes [My Copy] PLoS Comput Biol, Vol. 3, No. 9. (7 September 2007), e175. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted to bacteria bbh gene orthologs phylogeny by treangen on 2008-11-27 19:38:15 as along with 11 people and 3 groups Jporci druvus carlk operon dpollard dquest djkt zwang cabbagezs heliopais blobbybirdman EisenLab cis-regulatory-evolution Myxo group
	Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by A. Matsuya, R. Sakate, Y. Kawahara, et al.K. O. Koyanagi, Y. Sato, Y. Fujii, C. Yamasaki, T. Habara, H. Nakaoka, F. Todokoro, K. Yamaguchi, T. Endo, S. Oota, W. Makalowski, K. Ikeo, Y. Suzuki, K. Hanada, K. Hashimoto, M. Hirai, H. Iwama, N. Saitou, A. T. Hiraki, L. Jin, Y. Kaneko, M. Kanno, K. Murakami, A. O. Noda, N. Saichi, R. Sanbonmatsu, M. Suzuki, J. Takeda, M. Tanaka, T. Gojobori, T. Imanishi, T. Itoh posted to computational-biology databases orthologs phylogenomics tools by cmzmasek on 2008-11-03 23:47:29 as along with 2 people shirleym guhjy
	Automatic clustering of orthologs and in-paralogs from pairwise species comparisons1 [My Copy] Journal of Molecular Biology, Vol. 314, No. 5. (14 December 2001), pp. 1041-1052. by Maido Remm,, Christian .. V. .. Storm,, Erik .. L. .. Sonnhammer, posted to clustering orthologs by wiedehopf on 2008-07-24 15:20:17 as along with 16 people and 3 groups PolymeraseI biomcgary isimpson thegoose2 operon cgaugain tharris tmmurali indigoviolet Sharpshoot jhc gurkanbebek bluto incovoma ninch cerca C. elegans / WormBase EisenLab BioinfoCIPF
	HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms [My Copy] BMC Bioinformatics, Vol. 6, No. Suppl 4. (1 December 2005), S21. by Maria Persico, Arnaud Ceol, Caius Gavrila, Robert Hoffmann, Arnaldo Florio, Gianni Cesareni posted to interactomes networks orthologs protein proteome wiring by mariap3636 on 2008-07-15 11:02:23 as along with 5 people guhjy aceol Scis0000002 cerca maryee
	eggNOG: automated construction and annotation of orthologous groups of genes. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (16 January 2008), gkm796. by Lars Juhl J. Jensen, Philippe Julien, Michael Kuhn, et al.Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork posted to orthologs by hplatero on 2008-02-13 18:14:08 as along with 8 people sjcockell yas johanviklund guhjy jmeppley maximilianh Thaverkamp larsjuhljensen
	Assessment of phylogenomic and orthology approaches for phylogenetic inference [My Copy] Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 815-824. by B. E. Dutilh, V. van Noort, R. T. J. M. van der Heijden, T. Boekhout, B. Snel, M. A. Huynen posted to orthologs orthology phylogenetics by svdate on 2007-12-04 15:52:57 as along with 3 people and 1 group calderonv skembel maximilianh iSEEM
	Orthology prediction at Scalable Resolution by Phylogenetic Tree analysis [My Copy] BMC Bioinformatics, Vol. 8 (08 March 2007), 83. by Rene T. J. M. van der Heijden, Berend Snel, Vera van Noort, Martijn A. Huynen posted to orthologs orthology by svdate on 2007-12-04 15:51:27 as along with 1 person operon
	Inparanoid: a comprehensive database of eukaryotic orthologs. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by K. P. O'Brien, M. Remm, E. L. Sonnhammer posted to identification inparanoid orthologs paralogs by bluto on 2006-12-25 12:00:47 as along with 10 people and 2 groups thegoose2 cgaugain tharris mdimmic tmmurali dragonrez indigoviolet tny incovoma jandot C. elegans / WormBase EisenLab
	OrthoMCL: identification of ortholog groups for eukaryotic genomes. [My Copy] Genome research, Vol. 13, No. 9. (September 2003), pp. 2178-2189. by Li Li, Christian J. Stoeckert, David S. Roos posted to identification orthologs orthomcl by bluto on 2006-12-12 16:32:59 as along with 15 people and 2 groups GustavoLacerda biomcgary sjcockell thegoose2 nlapalu dullhunk natstreet druvus tharris mdimmic operon indigoviolet AaronDarling maximilianh ninch C. elegans / WormBase EisenLab
	The COG database: a tool for genome-scale analysis of protein functions and evolution [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 33-36. by Roman L. Tatusov, Michael Y. Galperin, Darren A. Natale, Eugene V. Koonin posted to cog cognitor identification orthologs paralogs by bluto on 2006-12-08 09:18:37 as along with 3 people aceol j3xucite Ema
	The COG database: an updated version includes eukaryotes [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (11 September 2003), 41. by Roman Tatusov, Natalie Fedorova, John Jackson, et al.Aviva Jacobs, Boris Kiryutin, Eugene Koonin, Dmitri Krylov, Raja Mazumder, Sergei Mekhedov, Anastasia Nikolskaya, B. Sridhar Rao, Sergei Smirnov, Alexander Sverdlov, Sona Vasudevan, Yuri Wolf, Jodie Yin, Darren Natale posted to cog kog orthologs by bluto on 2006-12-06 16:55:20 as along with 14 people and 2 groups aceol sjcockell thegoose2 cgaugain coela guhjy tharris dmp arve indigoviolet j3xucite treangen westoll natstreet C. elegans / WormBase EisenLab
	Conservation versus parallel gains in intron evolution. [My Copy] Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1741-1748. by A. V. Sverdlov, I. B. Rogozin, V. N. Babenko, E. V. Koonin posted to introns orthologs by penka to the group Nie on 2006-05-01 23:40:20 as

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evolution	18
bioinformatics	10
paralogs	9
phylogenomics	9
bacteria	7
comparative_genomics	7
phylogenetics	6
evolutionary_genomics	5
identification	5
cog	4
archaea	3
evolutionary-genomics	3
gene_duplication	3
inparanoid	3
orthology	3
software	3
bbh	2
bioinformatics_databases	2
bioinformatics_software	2
clustering	2
clusterings	2
conserved_modules	2
eukaryotic_rna_polymerase	2
eukatior	2
gene	2
gene_families	2
genome	2
genome_annotation	2
homology	2
kog	2
lateral_gene_transfer	2
microbial_genomics	2
orthologs_databases	2
orthology_inference	2
orthomcl	2
phylogeny	2
proteobacteria	2
rna_polymerase_ii	2
rna_polymerases	2
tree_of_life	2
aging	1
algorithm	1
alphaproteobacteria	1
blast	1
chimpanzee	1
classification	1
cognitor	1
comparative	1
computational-biology	1
core_genome	1
cyanobacteria	1
database	1
databases	1
duplication	1
eukaryote	1
evola	1
evolutionary_rates	1
family	1
family_evolution	1
firmicutes	1
gene-duplication	1
gene_expression_analysis	1
gene_family	1
genome-duplication	1
genome_organization	1
genomics	1
hmm	1
human	1
inparalogs	1
interactomes	1
introns	1
marine_microbiology	1
microbiology	1
mouse_human	1
networks	1
orthoclusterdb	1
prochlorococcus	1
protein	1
proteome	1
review	1
rhizobia	1
selection	1
synteny	1
systematics	1
taxonomy	1
toblog	1
tools	1
wiring	1
xenolog	1
z100	1

Tag orthologs [28 articles] Export

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