Tag pathways [at least 200 articles] Export

Recent papers classified by the tag pathways.

	Why do we respond so differently? Reviewing determinants of human salivary cortisol responses to challenge [My Copy] Psychoneuroendocrinology, Vol. 34, No. 1. (January 2009), pp. 2-18. by B. Kudielka, D. Hellhammer, S. Wust posted to stress review pathways cortisol by sophiebostock on 2009-11-06 17:00:13 as along with 3 people romanUCL ajw gareth
	Positive Affect and Psychobiological Processes Relevant to Health [My Copy] Journal of Personality, Vol. 9999, No. 9999. (30 September 2009) by Andrew Steptoe, Samantha Dockray, Jane Wardle posted to psychobiology positive pathways affect by sophiebostock on 2009-11-06 16:31:26 as
	Do Depression and Anxiety Mediate the Link Between Educational Attainment and CHD? [My Copy] Psychosom Med, Vol. 68, No. 1. (1 January 2006), pp. 25-32. by Rebecca C. Thurston, Laura D. Kubzansky, Ichiro Kawachi, Lisa F. Berkman posted to status socioeconomic pathways education depression cvd chd anxiety by sophiebostock on 2009-11-06 15:28:44 as
	Thalamic relay functions and their role in corticocortical communication: generalizations from the visual system. [My Copy] Neuron, Vol. 33, No. 2. (17 January 2002), pp. 163-175. by R. W. Guillery, S. M. Sherman posted to thalamic_inputs relays pathways generalizations cortical_areas axons by kostasl on 2009-11-06 10:00:25 as along with 1 person sylvain_chevallier
	Extraction of phylogenetic network modules from the metabolic network [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 130. by Takuji Yamada, Minoru Kanehisa, Susumu Goto posted to these pathways network by calderonv on 2009-11-05 13:34:12 as along with 1 person and 1 group adampah Bioinformatics
	Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages [My Copy] Nature Biotechnology, Vol. 21, No. 9. (17 August 2003), pp. 1055-1062. by Shailesh V. Date, Edward M. Marcotte posted to these pathways method by calderonv on 2009-11-05 11:41:41 as along with 4 people shung tmmurali balajis svdate
	Distinguishing between smooth and rough free energy barriers in protein folding [My Copy] Biochemistry, Vol. 0, No. ja. (0000) by Stefano Gianni, Maurizio Brunori, Per Jemth, Mikael Oliveberg, Mingjie Zhang posted to transition_states transition_state protein_stability pathways globular_proteins free_energy energy_barriers chevron by samcho on 2009-11-02 19:49:30 as
	Identifying differential correlation in gene/pathway combinations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (18 November 2008), 488. by Rosemary Braun, Leslie Cope, Giovanni Parmigiani posted to pathways expression differential correlation by dolchan on 2009-10-29 17:04:54 as along with 11 people dipenps zufar jfr shikin mdstobbe imina rdiaz renatomilani lptolik barriot ptrobajo
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to pathways glioblastoma gbm cancer by dolchan on 2009-10-29 17:04:09 as along with 23 people and 2 groups iskathy srp33 ajbattle aezrin myzhang chrisamiller fenghezi jessopher jfr zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shikin shigepong Roswell Cancer Crosstalk GeneGo
	Subgroup Differences in the Modus Operandi of Adolescent Sexual Offenders [My Copy] Child Maltreat, Vol. 1, No. 1. (1 February 1996), pp. 17-24. by Keith L. Kaufman, Daniel R. Hilliker, Eric L. Daleiden posted to sex pathways offenders by bgockel on 2009-10-28 17:20:42 as
	Simple Energy Landscape Model for the Kinetics of Functional Transitions in Proteins [My Copy] The Journal of Physical Chemistry B, Vol. 109, No. 5. (1 February 2005), pp. 1959-1969. by Osamu Miyashita, Peter G. Wolynes, Jose N. Onuchic posted to pathways kinetics energy_landscape dynamics conformational_changes active-state activation by xdeupi on 2009-10-28 12:45:14 as along with 2 people abovell aqeel
	Cell Cycle Regulators in the Neuronal Death Pathway of Amyotrophic Lateral Sclerosis Caused by Mutant Superoxide Dismutase 1 [My Copy] J. Neurosci., Vol. 23, No. 6. (15 March 2003), pp. 2131-2140. by Minh D. Nguyen, Mathieu Boudreau, Jasna Kriz, Sebastien Couillard-Despres, David R. Kaplan, Jean-Pierre Julien posted to sod1 sclerosis pathways neurological_diseases neurological_disease neural_system motor_neuron_disease lateral cyclin_dependent_kinase amyotrophic_lateral_sclerosis amyotrophic als by ekotelnikova on 2009-10-28 10:21:54 as
	Neural system-enriched gene expression: relationship to biological pathways and neurological diseases [My Copy] Physiol. Genomics, Vol. 18, No. 2. (8 July 2004), pp. 167-183. by Jianhua Zhang, Amy Moseley, Anil G. Jegga, et al.Ashima Gupta, David P. Witte, Maureen Sartor, Mario Medvedovic, Sarah S. Williams, Cathy Ley-Ebert, Lique M. Coolen, Gregory Egnaczyk, Mary B. Genter, Michael Lehman, Jerry Lingrel, John Maggio, Linda Parysek, Ryan Walsh, Ming Xu, Bruce J. Aronow posted to systems_biology signaling_pathways regulatory_pathways pathways neurological_diseases neurological_disease neural_system nervous_tissues nervous_system_differentiation motor_neuron_disease microarray_data gene_expression_profiles gene_expression_database amyotrophic_lateral_sclerosis alzheimer als by ekotelnikova on 2009-10-19 15:26:06 as
	Do pathways lead to better organized care processes? [My Copy] Journal of evaluation in clinical practice, Vol. 15, No. 5. (October 2009), pp. 782-788. by Kris Vanhaecht, Karel De Witte, Massimiliano Panella, Walter Sermeus posted to pathways by wilvc on 2009-10-14 06:33:27 as
	Metabolic pathways of clostridia for producing butanol [My Copy] Biotechnology Advances, Vol. 27, No. 6. (16 November 2009), pp. 764-781. by R. Gheshlaghi, J. M. Scharer, M. Moo-Young, C. P. Chou posted to pathways metabolic clostridia butanol by crgGTL on 2009-10-12 15:04:41 as along with 1 person Winzer
	Inhibition of MLK3-MKK4/7-JNK1/2 pathway by Akt1 in exogenous estrogen-induced neuroprotection against transient global cerebral ischemia by a non-genomic mechanism in male rats. [My Copy] Journal of neurochemistry, Vol. 99, No. 6. (December 2006), pp. 1543-1554. by Ran Wang, Quan-Guang G. Zhang, Dong Han, Jing Xu, Qian Lü, Guang-Yi Y. Zhang posted to signaling_pathways pathways by ekotelnikova on 2009-10-08 16:02:08 as
	Activation of the estrogen receptor through phosphorylation by mitogen-activated protein kinase. [My Copy] Science (New York, N.Y.), Vol. 270, No. 5241. (1 December 1995), pp. 1491-1494. by S. Kato, H. Endoh, Y. Masuhiro, et al.T. Kitamoto, S. Uchiyama, H. Sasaki, S. Masushige, Y. Gotoh, E. Nishida, H. Kawashima, D. Metzger, P. Chambon posted to signaling_pathways pathways by ekotelnikova on 2009-10-08 16:01:13 as
	Activation of the unliganded estrogen receptor by EGF involves the MAP kinase pathway and direct phosphorylation. [My Copy] The EMBO journal, Vol. 15, No. 9. (1 May 1996), pp. 2174-2183. by G. Bunone, P. A. Briand, R. J. Miksicek, D. Picard posted to signaling_pathways pathways glioblastoma by ekotelnikova on 2009-10-08 15:59:48 as
	Diosgenin induces hypoxia-inducible factor-1 activation and angiogenesis through estrogen receptor-related phosphatidylinositol 3-kinase/Akt and p38 mitogen-activated protein kinase pathways in osteoblasts. [My Copy] Molecular pharmacology, Vol. 68, No. 4. (October 2005), pp. 1061-1073. by Men Luh L. Yen, Jen Liang L. Su, Chung Liang L. Chien, et al.Kuang Wen W. Tseng, Ching Yao Y. Yang, Wei Fang F. Chen, Chiao Chia C. Chang, Min Liang L. Kuo posted to pathways glioblastoma by ekotelnikova on 2009-10-08 15:58:15 as
	Mechanisms of hypoxic gene regulation of angiogenesis factor Cyr61 in melanoma cells. [My Copy] The Journal of biological chemistry, Vol. 278, No. 46. (14 November 2003), pp. 45651-45660. by Manfred Kunz, Steffen Moeller, Dirk Koczan, et al.Peter Lorenz, Roland H. Wenger, Michael O. Glocker, Hans-Juergen J. Thiesen, Gerd Gross, Saleh M. Ibrahim posted to pathways glioblastoma by ekotelnikova on 2009-10-08 15:51:32 as
	Cyr61 protects against hyperoxia-induced cell death via Akt pathway in pulmonary epithelial cells. [My Copy] American journal of respiratory cell and molecular biology, Vol. 33, No. 3. (September 2005), pp. 297-302. by Yang Jin, Hong Pyo P. Kim, Emeka Ifedigbo, Lester F. Lau, Augustine M. Choi posted to signaling_pathways pathways glioblastoma angiogenesis by ekotelnikova on 2009-10-08 15:49:10 as
	Genetic pathways to glioblastomas. [My Copy] Neuropathology : official journal of the Japanese Society of Neuropathology, Vol. 25, No. 1. (March 2005), pp. 1-7. by Hiroko Ohgaki posted to pathways glioblastoma by ekotelnikova on 2009-10-08 15:39:36 as along with 1 person monimonicas
	Targeting malignant glioma survival signalling to improve clinical outcomes [My Copy] Journal of Clinical Neuroscience, Vol. 14, No. 4. (April 2007), pp. 301-308. by M. Wong, A. Kaye, C. Hovens posted to pathways growth_factors combination_therapy by ekotelnikova on 2009-10-08 15:30:56 as along with 1 person and 1 group loopback007 Cancer_Stem_Cells
	P bodies: at the crossroads of post-transcriptional pathways [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 1. (01 January 2007), pp. 9-22. by Ana Eulalio, Isabelle Behm-Ansmant, Elisa Izaurralde posted to review regulation post-transcriptional pathways p-bodies mrna localization gene-expression cytoplasmic cell-biology by bertelsen on 2009-10-07 23:24:55 as along with 3 people and 2 groups xico margaritis lzhonsailing Neuroscience WetBiology
	Exploring Molecular Mechanisms of Ligand Recognition by Opioid Receptors with Metadynamics. [My Copy] Biochemistry (28 September 2009) by Davide Provasi, Andrea Bortolato, Marta Filizola posted to pathways md binding_kinetics binding by xdeupi on 2009-10-06 19:30:24 as
	Gene expression phenotypic models that predict the activity of oncogenic pathways. [My Copy] Nature genetics. , Vol. 34, No. 2. (June 2003), pp. 226-230. by Erich Huang, Seiichi Ishida, Jennifer Pittman, et al.Holly Dressman, Andrea Bild, Mark Kloos, Mark D'Amico, Richard G. Pestell, Mike West, Joseph R. Nevins posted to phenotypes pathways oncogenesis models microarray gene-expression by bertelsen on 2009-10-05 23:57:33 as along with 1 person balicea
	Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context. [My Copy] BMC bioinformatics, Vol. 8 (02 June 2007), 179. by Markus Weniger, Julia C. Engelmann, Jörg Schultz posted to webservices visualization tool software proteomics pathways metabolic integration genomics gene-expression functional-genomics analysis by bertelsen on 2009-09-28 15:54:07 as along with 10 people and 1 group barriot daforerog udivi GeeSharpMinor guhjy jfr rdiaz ealloza frohike fmenolascina BioinfoCIPF
	Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2617-2618. by Mathieu Clement-Ziza, Christophe Malabat, Christian Weber, et al.Ivan Moszer, Tero Aittokallio, Catherine Letondal, Sandrine Rousseau posted to software pathways network expression cytoscape by neils on 2009-09-28 00:14:20 as along with 4 people dswan sjcockell frohike druvus
	Pathways to the analysis of microarray data. [My Copy] Trends in biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435. by R. Keira Curtis, Matej Oresic, Antonio Vidal-Puig posted to tool review pathways pathway-analysis microarray integration gene-expression enrichment-analysis analysis by bertelsen on 2009-09-27 20:16:12 as along with 11 people and 2 groups thomaskelder udivi AlexanderPico jfr saman_vp snuppepuppan textoris Ayest tardigrade ealloza heliopais ConklinLab BioinfoCIPF
	A systematic strategy for the discovery of candidate genes responsible for phenotypic variation. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 573 (2009), pp. 329-345. by Paul Fisher, Harry Noyes, Stephen Kemp, Robert Stevens, Andrew Brass posted to workflows web-services variation trypanosoma systematic qtl qtg phenotypic pathways pathway-driven genes congolense by fisherp on 2009-09-25 11:45:31 as along with 1 person dullhunk
	Differential expression of 12 histone deacetylase (HDAC) genes in astrocytomas and normal brain tissue: class II and IV are hypoexpressed in glioblastomas [My Copy] BMC Cancer, Vol. 8, No. 1. (19 August 2008), 243. by Agda L. Eterovic, Maria Cortez, Elvis Valera, et al.Fabio Motta, Rosane Queiroz, Helio Machado, Carlos Carlotti, Luciano Neder, Carlos Scrideli, Luiz Tone posted to pathways by ipark-kaist on 2009-09-21 01:55:46 as
	Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles [My Copy] Research in Computational Molecular Biology (2008), pp. 347-359. by Igor Ulitsky, Richard Karp, Ron Shamir posted to pathways expression disease-specific differential by ptrobajo on 2009-09-17 21:48:48 as along with 2 people poirel akshayk
	Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels [My Copy] Nature, Vol. 451, No. 7174. (03 January 2008), pp. 86-89. by Shota Atsumi, Taizo Hanai, James C. Liao posted to pathways non-fermentative isobutanol higher escherichia coli branched-chain biofuel alcohols by Winzer on 2009-09-17 16:39:58 as
	Origin and evolution of metabolic pathways [My Copy] Physics of Life Reviews, Vol. 6, No. 1. (March 2009), pp. 23-52. by Renato Fani, Marco Fondi posted to pathways metabolic evolution enzyme by pablocarb on 2009-09-16 18:04:41 as
	Directed evolution of a (alpha-beta)8-barrel enzyme to catalyze related reactions in two different metabolic pathways [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 18. (29 August 2000), pp. 9925-9930. by Catharina Jurgens, Alexander Strom, Dennis Wegener, Stefan Hettwer, Matthias Wilmanns, Reinhard Sterner posted to scaffold promiscuity pathways metabolic evolution enzyme directed_evolution catalysis barrel by pablocarb on 2009-09-16 13:35:46 as along with 1 person msuarezdiez
	An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by Min Xu, Ming-Chih C. Kao, Juan Nunez-Iglesias, Joseph R. Nevins, Mike West, Xianghong Jasmine J. Zhou posted to topological phenotype pathways network modules microarray methodology integrative integration information functional-genomics disease data-integration cancer by bertelsen on 2009-09-15 20:56:41 as along with 4 people guhjy Zephyrus cswinburne jfr
	Introduction to NF-\|[kappa]\|B: players, pathways, perspectives [My Copy] Oncogene, Vol. 25, No. 51. (30 October 2006), pp. 6680-6684. by T. D. Gilmore posted to review pathways nfkb introduction function by greg on 2009-09-15 15:53:58 as along with 2 people shoshin 7ofAnn
	Probabilistic path ranking based on adjacent pairwise coexpression for metabolic transcripts analysis [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 250-257. by Ichigaku Takigawa, Hiroshi Mamitsuka posted to pathways by sotacam on 2009-09-14 12:23:26 as along with 1 person ptrobajo
	Analysis of alpha-synuclein, dopamine and parkin pathways in neuropathologically confirmed parkinsonian nigra. [My Copy] Acta neuropathologica, Vol. 113, No. 3. (March 2007), pp. 253-263. by L. B. Moran, E. Croisier, D. C. Duke, et al.M. E. Kalaitzakis, F. Roncaroli, M. Deprez, D. T. Dexter, R. K. Pearce, M. B. Graeber posted to pathways parkinson candidate-gene-discovery by mitko on 2009-09-09 16:22:16 as
	Towards a pathway definition of Parkinson's disease: a complex disorder with links to cancer, diabetes and inflammation. [My Copy] Neurogenetics, Vol. 9, No. 1. (February 2008), pp. 1-13. by Linda B. Moran, Manuel B. Graeber posted to pathways parkinson microarrays by mitko on 2009-09-09 16:15:57 as along with 1 person daforerog
	From single- to multi-target drugs in cancer therapy: when aspecificity becomes an advantage. [My Copy] Current medicinal chemistry, Vol. 15, No. 5. (2008), pp. 422-432. by A. Petrelli, S. Giordano posted to therapy single-target review pathways multi-target inhibitors drug-target drug-discovery drug cancer by bertelsen on 2009-09-05 10:50:15 as along with 1 person biomcgary
	Cancer therapy: targeting cell cycle regulators. [My Copy] Anti-cancer agents in medicinal chemistry, Vol. 8, No. 7. (October 2008), pp. 723-731. by Martin Johansson, Jenny Liao L. Persson posted to therapy review regulators pathways inhibitors human drug-target drug cell-growth cell-cycle cancer apoptosis by bertelsen on 2009-09-05 10:31:30 as
	The role of modelling in identifying drug targets for diseases of the cell cycle. [My Copy] Journal of the Royal Society, Interface / the Royal Society, Vol. 3, No. 10. (22 October 2006), pp. 617-627. by Robert G. Clyde, James L. Bown, Ted R. Hupp, Nikolai Zhelev, John W. Crawford posted to systems-biology review regulation pathways network modelling drug-target drug-discovery disease cell-cycle by bertelsen on 2009-09-05 10:26:55 as
	Power-law models of signal transduction pathways. [My Copy] Cellular signalling, Vol. 19, No. 7. (July 2007), pp. 1531-1541. by Julio Vera, Eva Balsa-Canto, Peter Wellstead, Julio R. Banga, Olaf Wolkenhauer posted to signal-transduction power-laws pathways models biochemical by bertelsen on 2009-09-03 17:02:49 as
	Bayesian inference for differential equations [My Copy] Theor. Comput. Sci., Vol. 408, No. 1. (2008), pp. 4-16. by Mark Girolami posted to uncertainty systems-biology pathways nonlinear dynamic differential-equation biochemical-systems-theory biochemical baysian by bertelsen on 2009-09-02 17:38:49 as
	Metabolic control analysis in drug discovery and disease. [My Copy] Nature biotechnology, Vol. 20, No. 3. (March 2002), pp. 243-249. by Marta Cascante, Laszlo G. Boros, Begoña Comin-Anduix, Pedro de Atauri, Josep J. Centelles, Paul W-N W. Lee posted to therapy review pathways metabolic-network metabolic-control-analysis medical_applications functional-genomics drug-discovery disease cancer_therapy cancer biochemical by bertelsen on 2009-09-02 16:05:19 as along with 1 person alexg
	Error control variability in pathway-based microarray analysis [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2216-2221. by David L. Gold, Jeffrey C. Miecznikowski, Song Liu posted to pathways microarray by mkbehnke on 2009-09-01 15:55:14 as along with 4 people shikin VGreiff rdiaz guhjy
	GAGE: generally applicable gene set enrichment for pathway analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 161. by Weijun Luo, Michael Friedman, Kerby Shedden, Kurt Hankenson, Peter Woolf posted to pathways by sotacam on 2009-08-27 09:30:37 as along with 12 people and 2 groups dipenps GustavoLacerda guhjy dswan ptrobajo VGreiff thegoose vinithepooh kshameer renatomilani cassj stajich Bioinformatics Mycology
	SubpathwayMiner: a software package for flexible identification of pathways [My Copy] Nucl. Acids Res. (25 August 2009), gkp667. by Chunquan Li, Xia Li, Yingbo Miao, et al.Qianghu Wang, Wei Jiang, Chun Xu, Jing Li, Junwei Han, Fan Zhang, Binsheng Gong, Liangde Xu posted to software r-project pathways data-mining by neils on 2009-08-26 23:40:09 as along with 5 people Vincent_Rouilly ptrobajo irenas renatomilani brianb
	Global Transcript Profiles of Fat in Monozygotic Twins Discordant for BMI: Pathways behind Acquired Obesity [My Copy] PLoS Med, Vol. 5, No. 3. (11 March 2008), e51. by Kirsi H. Pietiläinen, Jussi Naukkarinen, Aila Rissanen, et al.Juha Saharinen, Pekka Ellonen, Heli Keränen, Anu Suomalainen, Alexandra Götz, Tapani Suortti, Hannele Yki-Järvinen, Matej Orešič, Jaakko Kaprio, Leena Peltonen posted to twins transcript profles pathways obesity monozygotic global fat discordant bmi by dswan on 2009-08-26 14:29:38 as along with 1 person Terkko

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review	40
cancer	38
database	38
networks	37
metabolic	27
evolution	26
metabolism	19
network	18
sysbio	18
wikipathways	18
gene-expression	16
microarray	16
signaling	16
bioinformatics	15
alignment	14
visualization	14
expression	13
analysis	12
biology	12
disease	12
pathway	12
prediction	12
software	12
drosophila	11
innate_immunity	11
simulation	11
standards	11
algorithm	10
biochemical	10
model	10
phenotype	10
systems-biology	10
bacteria	9
biological-pathways	9
genome	9
integration	9
tool	9
data	8
genes	8
glioblastoma	8
phenotypes	8
protein	8
computational	7
cytoscape	7
databases	7
enzyme	7
gene	7
genomics	7
genotype	7
genotype-phenotype	7
history	7
modelling	7
pathwayanalysis	7
regulation	7
systems	7
wiki	7
biological-network	6
breast	6
community	6
identification	6
imd	6
inflammation	6
jak-stat	6
models	6
paramestim	6
sbml	6
signaling_pathways	6
structure	6
toll	6
visual	6
bind	5
cancer-crosstalk	5
drug	5
drug-discovery	5
drug-target	5
dynamic	5
functional-genomics	5
fungi	5
glycolysis	5
graph	5
host-pathogen	5
human	5
immmun-response	5
immune	5
immune-response	5
inflammtion	5
innmune-response	5
insect	5
interaction	5
interactions	5
mapk	5
microarrays	5
ontology	5
parasites	5
therapy	5
vision	5
gsea	4
macrophage	4
multiple_sequence_alignment	4
proteins	4

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