Tag peptide-identification [138 articles] Export

Recent papers classified by the tag peptide-identification.

	The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools. [My Copy] Journal of proteome research, Vol. 7, No. 1. (January 2008), pp. 96-103. by J. Klimek, J. S. Eddes, L. Hohmann, et al.J. Jackson, A. Peterson, S. Letarte, P. R. Gafken, J. E. Katz, P. Mallick, H. Lee, A. Schmidt, R. Ossola, J. K. Eng, R. Aebersold, D. B. Martin posted to peptide-identification proteomics proteomics-data tandem-mass-spectrometry by nedwards on 2009-06-10 17:12:07 as along with 2 people brianb guhjy
	Low Cost, Scalable Proteomics Data Analysis Using Amazon’s Cloud Computing Services and Open Source Search Algorithms [My Copy] Journal of Proteome Research, Vol. 8, No. 6. (5 June 2009), pp. 3148-3153. by Brian D. Halligan, Joey F. Geiger, Andrew K. Vallejos, Andrew S. Greene, Simon N. Twigger posted to cloud-computing peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2009-06-10 17:09:39 as along with 5 people walshtp Scis0000002 sjcockell neils brianb
	Accurate annotation of peptide modifications through unrestrictive database search. [My Copy] Journal of proteome research, Vol. 7, No. 1. (January 2008), pp. 170-181. by S. Tanner, S. H. Payne, S. Dasari, et al.Z. Shen, P. A. Wilmarth, L. L. David, W. F. Loomis, S. P. Briggs, V. Bafna posted to peptide-identification post-translational-modifications tandem-mass-spectra by nedwards on 2009-05-19 16:15:42 as along with 3 people brianb fishtank guhjy
	An Unsupervised, Model-Free, Machine-Learning Combiner for Peptide Identifications from Tandem Mass Spectra [My Copy] Clinical Proteomics, Vol. 5, No. 1. (2009) by Nathan Edwards, Xue Wu, Chau-Wen Tseng posted to peptide-identification peptide-identification-combiners proteomics tandem-mass-spectrometry by nedwards on 2009-04-19 19:28:43 as along with 1 person brianb
	Sequence Similarity-Based Proteomics in Insects: Characterization of the Larvae Venom of the Brazilian Moth Cerodirphia speciosa [My Copy] Journal of Proteome Research, Vol. 4, No. 3. (1 June 2005), pp. 862-869. by Anna Shevchenko, Leal, Patrice Waridel, Silvia T. Bittencourt, Valle, Andrej Shevchenko posted to msblast peptide-identification protein-homology proteomics tandem-mass-spectrometry by nedwards on 2009-02-05 15:44:30 as
	Charting the Proteomes of Organisms with Unsequenced Genomes by MALDI-Quadrupole Time-of-Flight Mass Spectrometry and BLAST Homology Searching [My Copy] Analytical Chemistry, Vol. 73, No. 9. (1 May 2001), pp. 1917-1926. by Andrej Shevchenko, Shamil Sunyaev, Alexander Loboda, et al.Anna Shevchenko, Peer Bork, Werner Ens, Kenneth G. Standing posted to msblast peptide-identification protein-homology proteomics tandem-mass-spectrometry by nedwards on 2009-02-05 15:42:48 as
	The Power and the Limitations of Cross-Species Protein Identification by Mass Spectrometry-driven Sequence Similarity Searches [My Copy] Mol Cell Proteomics, Vol. 3, No. 3. (1 March 2004), pp. 238-249. by Bianca Habermann, Jeffrey Oegema, Shamil Sunyaev, Andrej Shevchenko posted to msblast peptide-identification protein-homology proteomics tandem-mass-spectrometry by nedwards on 2009-02-05 15:42:07 as
	Peptide Sequence Confidence in Accurate Mass and Time Analysis and Its Use in Complex Proteomics Experiments [My Copy] J. Proteome Res. (28 October 2008) by Damon May, Yan Liu, Wendy Law, et al.Matt Fitzgibbon, Hong Wang, Samir Hanash, Martin Mcintosh posted to high-accuracy mass-spectrometry peptide-identification peptide-identification-statistics proteomics by nedwards on 2008-11-06 17:16:28 as along with 2 people brianb neils
	Improving Protein Identification Sensitivity by Combining MS and MS/MS Information for Shotgun Proteomics Using LTQ-Orbitrap High Mass Accuracy Data [My Copy] Anal. Chem., Vol. 80, No. 6. (15 March 2008), pp. 2018-2025. by B. Lu, A. Motoyama, C. Ruse, J. Venable, J. R. Yates posted to high-accuracy peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 17:15:12 as along with 3 people fishtank guhjy brianb
	Rapid and Accurate Peptide Identification from Tandem Mass Spectra [My Copy] J. Proteome Res. (28 May 2008) by Christopher Y. Park, Aaron A. Klammer, Lukas Käll, Michael J. Maccoss, William S. Noble posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 17:12:48 as along with 2 people guhjy brianb
	A Fast SEQUEST Cross Correlation Algorithm [My Copy] J. Proteome Res. (6 September 2008) by Jimmy K. Eng, Bernd Fischer, Jonas Grossmann, Michael J. Maccoss posted to peptide-identification proteomics sequest tandem-mass-spectrometry by nedwards on 2008-10-03 17:08:52 as along with 3 people alexgeorgiou fishtank brianb
	Enhancing Peptide Identification Confidence by Combining Search Methods [My Copy] J. Proteome Res. (18 June 2008) by Gelio Alves, Wells W. Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 17:03:50 as along with 1 person brianb
	DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring [My Copy] J. Proteome Res. (17 July 2008) by David L. Tabb, Ze-Qiang Ma, Daniel B. Martin, Amy-Joan L. Ham, Matthew C. Chambers posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 17:02:05 as along with 1 person brianb
	Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches [My Copy] J. Proteome Res. (14 August 2008) by Wilfred H. Tang, Ignat V. Shilov, Sean L. Seymour posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 16:58:55 as along with 1 person brianb
	Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra [My Copy] Mol Cell Proteomics (14 August 2008), M800103-MCP200. by Sangtae Kim, Nitin Gupta, Nuno Bandeira, Pavel A. Pevzner posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 16:56:53 as along with 2 people alexgeorgiou brianb
	Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold. [My Copy] Molecular & cellular proteomics : MCP, Vol. 7, No. 5. (1 May 2008), pp. 962-970. by M. Brosch, S. Swamy, T. Hubbard, J. Choudhary posted to mascot peptide-identification peptide-identification-statistics proteomics tandem tandem-mass-spectrometry by nedwards on 2008-10-03 16:56:18 as along with 4 people timhubbard mdharsee olberd brianb
	Improved Sequence Tag Generation Method for Peptide Identification in Tandem Mass Spectrometry [My Copy] J. Proteome Res. (12 September 2008) by Xia Cao, Alexey I. Nesvizhskii posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 16:53:45 as along with 1 person brianb
	Multi-spectra peptide sequencing and its applications to multistage mass spectrometry [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i416-423. by Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 16:51:47 as
	How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra? [My Copy] Journal of the American Society for Mass Spectrometry (7 August 2008) by Jürgen Cox, Nina C C. Hubner, Matthias Mann posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-10-03 16:49:44 as along with 3 people yylin guhjy brianb
	Open Mass Spectrometry Search Algorithm [My Copy] J. Proteome Res., Vol. 3, No. 5. (11 October 2004), pp. 958-964. by L. Y. Geer, S. P. Markey, J. A. Kowalak, et al.L. Wagner, M. Xu, D. M. Maynard, X. Yang, W. Shi, S. H. Bryant posted to omssa peptide-identification peptide-identification-statistics proteomics proteomics-software tandem-mass-spectrometry by nedwards on 2008-09-29 01:37:41 as along with 1 person robert
	Protein sequence tags: A novel solution for comparative proteomics [My Copy] PROTEOMICS, Vol. 5, No. 9. (2005), pp. 2364-2368. by Karsten Kuhn, Thorsten Prinz, Jürgen Schäfer, et al.Christian Baumann, Marco Schärfke, Stefan Kienle, Josef Schwarz, Sandra Steiner, Christian Hamon posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-09-22 22:18:37 as along with 1 person brianb
	Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses [My Copy] PROTEOMICS, Vol. 8, No. 14. (2008), pp. 2791-2797. by Alexander Scherl, Yihsuan S. Tsai, Scott A. Shaffer, David R. Goodlett posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-08-28 22:10:25 as along with 2 people guhjy brianb
	RAId DbS: Peptide Identification using Database Searches with Realistic Statistics [My Copy] Biology Direct, Vol. 2 (25 October 2007), 25. by Gelio Alves, Aleksey Y. Ogurtsov, Yi-Kuo Yu posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:39:57 as
	Calibrating E-values for MS2 database search methods [My Copy] Biology Direct, Vol. 2 (05 November 2007), 26. by Gelio Alves, Aleksey Y. Ogurtsov, Wells W. Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:37:35 as along with 1 person brianb
	Semisupervised model-based validation of Peptide identifications in mass spectrometry-based proteomics. [My Copy] J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 254-265. by H. Choi, A. I. Nesvizhskii posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:47:35 as along with 1 person guhjy
	Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies [My Copy] J. Proteome Res., Vol. 7, No. 1. (4 January 2008), pp. 245-253. by Brian C. Searle, Mark Turner, Alexey I. Nesvizhskii posted to machine-learning peptide-identification peptide-identification-combiners proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:43:14 as
	Semi-supervised learning for peptide identification from shotgun proteomics datasets [My Copy] Nature Methods, Vol. 4, No. 11. (21 October 2007), pp. 923-925. by Lukas Käll, Jesse D. Canterbury, Jason Weston, William S. Noble, Michael J. Maccoss posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-01-31 20:55:27 as along with 2 people Yanno tmmurali
	De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization [My Copy] Anal. Chem., Vol. 79, No. 4. (15 February 2007), pp. 1433-1446. by P. A. Dimaggio, C. A. Floudas posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:02:10 as
	Error tolerant searching of uninterpreted tandem mass spectrometry data [My Copy] PROTEOMICS, Vol. 2, No. 10. (2002), pp. 1426-1434. by David M. Creasy, John S. Cottrell posted to mascot nopdf peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:01:12 as
	Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics [My Copy] Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732. by Gelio Alves, Yi-Kuo Yu posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 20:53:55 as
	Optimal Construction of Theoretical Spectra for MS/MS Spectra Identification [My Copy] OMICS: A Journal of Integrative Biology, Vol. 9, No. 4. (2005), pp. 380-390. by Tema Fridman, Vladimir Protopopescu, Greg Hurst, Andrei Borziak, Andrey Gorin posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:42:10 as
	Spectral Quality Assessment for High-Throughput Tandem Mass Spectrometry Proteomics [My Copy] OMICS: A Journal of Integrative Biology, Vol. 8, No. 3. (2004), pp. 255-265. by Samuel Purvine, Natali Kolker, Eugene Kolker posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:39:03 as
	Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry [My Copy] Journal of Computational Biology, Vol. 8, No. 6. (2001), pp. 571-583. by Ting Chen, Jacob D. Jaffe, George M. Church posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:29:53 as
	HMMatch: Peptide Identification by Spectral Matching of Tandem Mass Spectra Using Hidden Markov Models [My Copy] Journal of Computational Biology, Vol. 14, No. 8. (2007), pp. 1025-1043. by Xue Wu, Chau-Wen Tseng, Nathan Edwards posted to peptide-identification peptide-identification-statistics proteomics spectral-matching tandem-mass-spectrometry by nedwards on 2007-12-31 14:21:47 as along with 1 person guhjy
	Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry [My Copy] Algorithms in Bioinformatics: Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002. Proceedings (2002), pp. 68-81. by Nathan Edwards, Ross Lippert posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-10 16:29:41 as
	PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling [My Copy] Anal. Chem., Vol. 77, No. 4. (15 February 2005), pp. 964-973. by A. Frank, P. Pevzner posted to denovo-interpretation peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 21:13:46 as
	Analysis and validation of proteomic data generated by tandem mass spectrometry [My Copy] Nat Meth, Vol. 4, No. 10. (October 2007), pp. 787-797. by Alexey Nesvizhskii, Olga Vitek, Ruedi Aebersold posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 16:03:29 as along with 4 people debasis robert guhjy fishtank
	Mass spectrometry and the age of the proteome [My Copy] Journal of Mass Spectrometry, Vol. 33, No. 1. (1998), pp. 1-19. by John R. Yates posted to peptide-identification proteomics shotgun tandem-mass-spectrometry by nedwards on 2007-10-18 17:33:29 as
	Large Scale Protein Profiling by Combination of Protein Fractionation and Multidimensional Protein Identification Technology (MudPIT) [My Copy] Mol Cell Proteomics, Vol. 5, No. 1. (1 January 2006), pp. 53-56. by Emily I. Chen, Johannes Hewel, Brunhilde Felding-Habermann, John R. Yates posted to mudpit peptide-identification proteomics by nedwards on 2007-10-18 17:21:50 as
	ProbIDtree: An automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer [My Copy] PROTEOMICS, Vol. 5, No. 16. (2005), pp. 4096-4106. by Ning Zhang, Xiao-Jun Li, Mingliang Ye, Sheng Pan, Benno Schwikowski, Ruedi Aebersold posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:39:40 as along with 1 person olberd
	Intensity-Based Statistical Scorer for Tandem Mass Spectrometry [My Copy] Anal. Chem., Vol. 75, No. 3. (1 February 2003), pp. 435-444. by M. Havilio, Y. Haddad, Z. Smilansky posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:37:53 as
	Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data. [My Copy] J Proteome Res, Vol. 4, No. 5. (t 2005), pp. 1687-1698. by W. R. Cannon, K. H. Jarman, B. J. Webb-Robertson, et al.D. J. Baxter, C. S. Oehmen, K. D. Jarman, A. Heredia-Langner, K. J. Auberry, G. A. Anderson posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:22:15 as
	High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics. [My Copy] Proteomics, Vol. 4, No. 7. (July 2004), pp. 1977-1984. by J. Colinge, A. Masselot, I. Cusin, et al.E. Mahé, A. Niknejad, G. Argoud-Puy, S. Reffas, N. Bederr, A. Gleizes, P. A. Rey, L. Bougueleret posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:21:46 as
	OLAV: towards high-throughput tandem mass spectrometry data identification. [My Copy] Proteomics, Vol. 3, No. 8. (August 2003), pp. 1454-1463. by J. Colinge, A. Masselot, M. Giron, T. Dessingy, J. Magnin posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:21:22 as
	A Statistical Basis for Testing the Significance of Mass Spectrometric Protein Identification Results [My Copy] Anal. Chem., Vol. 72, No. 5. (1 March 2000), pp. 999-1005. by J. Eriksson, B. T. Chait, D. Fenyo posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:19:03 as
	ProbID: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data [My Copy] PROTEOMICS, Vol. 2, No. 10. (2002), pp. 1406-1412. by Ning Zhang, Ruedi Aebersold, Benno Schwikowski posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:14:05 as along with 1 person robert
	A Hypergeometric Probability Model for Protein Identification and Validation Using Tandem Mass Spectral Data and Protein Sequence Databases [My Copy] Anal. Chem., Vol. 75, No. 15. (1 August 2003), pp. 3792-3798. by R. G. Sadygov, J. R. Yates posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-11 18:57:40 as
	Prediction of Error Associated with False-Positive Rate Determination for Peptide Identification in Large-Scale Proteomics Experiments Using a Combined Reverse and Forward Peptide Sequence Database Strategy [My Copy] J. Proteome Res., Vol. 6, No. 1. (5 January 2007), pp. 392-398. by E. L. Huttlin, A. D. Hegeman, A. C. Harms, M. R. Sussman posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-11 18:51:56 as
	De Novo peptide sequencing via tandem mass spectrometry: a graph-theoretical approach [My Copy] In RECOMB '99: Proceedings of the third annual international conference on Computational molecular biology (1999), pp. 135-144. by Vlado Dancik, Theresa A. Addona, Karl R. Clauser, James E. Vath, Pavel A. Pevzner posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-10-10 19:55:35 as
	Selective Isolation of N-Blocked Peptides by Isocyanate-Coupled Resin [My Copy] Anal. Chem., Vol. 79, No. 20. (14 September 2007), pp. 7910-7915. by Toshiyuki Mikami, Toshifumi Takao posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-09-21 13:45:34 as

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proteomics	137
tandem-mass-spectrometry	133
peptide-identification-statistics	36
denovo-interpretation	27
genome-annotation	15
proteomics-software	8
machine-learning	7
n-terminal-peptides	7
peptide-spectrum-score	6
spectral-matching	6
msblast	4
peptide-atlas	3
protein-homology	3
tandem	3
hidden-markov-models	2
high-accuracy	2
mascot	2
mass-spectrometry	2
omssa	2
peptide-identification-combiners	2
protein-quantitation	2
cloud-computing	1
digest-specificity	1
locality-sensitive-hashing	1
microorganism-identification	1
mudpit	1
nopdf	1
post-translational-modifications	1
proteomics-data	1
proteomics-data-repository	1
proteomics-workflows	1
sequence-alignment	1
sequence-database	1
sequencing-by-hybridization-graph	1
sequest	1
shotgun	1
tandem-mass-spectra	1

Tag peptide-identification [138 articles] Export

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