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Tag phage [178 articles]

Recent papers classified by the tag phage.
  • Understanding the Evolutionary Fate of Finite Populations: The Dynamics of Mutational Effects
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e94.
    by Olin K Silander, Olivier Tenaillon, Lin Chao
    posted to evolution fitness genetic_drift mutations phage selection virus by yvoronin on 2008-08-02 19:09:59 as ** along with 3 people and 1 group stevanspringer joepickrell zwang FAB-lab
  • notes Little lambda, who made thee?
    Microbiol Mol Biol Rev, Vol. 68, No. 4. (December 2004), pp. 796-813.
    by ME Gottesman, RA Weisberg
    posted to initiation lamda phage prokariote repressor review transcription by xico on 2006-04-04 17:52:26 as *** along with 1 person and 1 group gloria WetBiology
  • The origin of viruses and their possible roles in major evolutionary transitions
    Virus Research, Vol. 117, No. 1. (April 2006), pp. 5-16.
    by Patrick Forterre
    posted to phage by vwchan on 2006-06-21 00:00:03 as ** along with 1 person and 1 group philosof beta
  • Distribution of minigenes in the bacteriophage lambda chromosome.
    Gene, Vol. 329 (31 March 2004), pp. 115-124.
    by NA Oviedo, H Salgado, J Collado-Vides, G Guarneros
    posted to phage phage-genes by vwchan on 2006-11-03 01:15:37 as ** along with 1 person and 1 group discreteonyxorb beta
  • Chromosomal insertion sites for phages and plasmids.
    J Bacteriol, Vol. 174, No. 23. (December 1992), pp. 7495-7499.
    by AM Campbell
    posted to insertion-site phage prophage by vwchan on 2006-06-09 19:51:59 as ** along with 1 group beta
  • A proline tRNA(CGG) gene encompassing the attachment site of temperate phage 16-3 is functional and convertible to suppressor tRNA.
    Mol Microbiol, Vol. 54, No. 3. (November 2004), pp. 742-754.
    by B Blaha, S Semsey, S Ferenczi, Z Csiszovszki, PP Papp, L Orosz
    posted to insertion-site phage trna by vwchan on 2006-11-03 01:08:24 as ** along with 1 group beta
  • Does common architecture reveal a viral lineage spanning all three domains of life?
    Mol Cell, Vol. 16, No. 5. (3 December 2004), pp. 673-685.
    by SD Benson, JK Bamford, DH Bamford, RM Burnett
    posted to classification phage by vwchan on 2007-04-05 21:03:04 as ** along with 1 group beta
  • Guidelines for bacteriophage characterization.
    Adv Virus Res, Vol. 23 (1978), pp. 1-24.
    by HW Ackermann, A Audurier, L Berthiaume, LA Jones, JA Mayo, AK Vidaver
    posted to classification phage by vwchan on 2007-04-05 20:50:01 as ** along with 1 group beta
  • Site-specific integration of the Haemophilus influenzae bacteriophage HP1: location of the boundaries of the phage attachment site.
    J Bacteriol, Vol. 174, No. 20. (October 1992), pp. 6674-6677.
    by MA Hauser, JJ Scocca
    posted to boundary insertion-site integration phage by vwchan on 2006-06-09 19:59:42 as *** along with 1 group beta
  • Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome
    BMC Genomics, Vol. 7 (13 June 2006), 150.
    by Vasily T Tcherepanov, Angelika Ehlers, Chris Upton
    posted to phage-genes phage by vwchan on 2007-01-26 00:43:59 as ** along with 1 group beta
  • Phage Integrases: Biology and Applications
    Journal of Molecular Biology, Vol. 335, No. 3. (16 January 2004), pp. 667-678.
    by Amy C Groth, Michele P Calos
    posted to insertion-site integrase phage by vwchan on 2006-06-20 18:47:43 as ** along with 1 group beta
  • Virology: The gene weavers
    Nature, Vol. 441, No. 7094. (07 June 2006), pp. 683-685.
    by Garry Hamilton
    posted to phage by vwchan on 2006-06-20 18:50:58 as ** along with 3 people and 2 groups dayjm cmm rhyss FAB-lab beta
  • Analysis of the phage sequence space: The benefit of structured information
    Virology, Vol. 365, No. 2. (01 September 2007), pp. 241-249.
    by G Limamendez, A Toussaint, R Leplae
    posted to prophage phage-genes phage classification by vwchan on 2008-10-07 19:05:57 as **
  • Virus Taxonomy: Classification and Nomenclature of Viruses: Seventh Report of the International Committee on Taxonomy of Viruses
    (15 October 2000)
    by MH Van Regenmortel, International, CM Fauquet
    posted to phage review by vwchan on 2006-06-20 22:45:43 as ** along with 1 group beta
  • Distribution of prophages and SGI-1 antibiotic-resistance genes among different Salmonella enterica serovar Typhimurium isolates.
    Microbiology, Vol. 152, No. Pt 7. (July 2006), pp. 2137-2147.
    by AP Hermans, AM Beuling, AH van Hoek, HJ Aarts, T Abee, MH Zwietering
    posted to prophage phage antibiotic_resistance by vwchan on 2007-01-21 18:51:59 as ** along with 1 group beta
  • On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer
    BMC Evolutionary Biology, Vol. 6 (16 August 2006), 63.
    by Yanbin Yin, Daniel Fischer
    posted to phage-genes phage by vwchan on 2007-01-26 00:46:58 as ** along with 1 group beta
  • Diversity of phage integrases in Enterobacteriaceae: development of markers for environmental analysis of temperate phages
    Environmental Microbiology, Vol. 7, No. 10. (October 2005), pp. 1558-1567.
    by Claire Balding, Stephen A Bromley, Roger W Pickup, Jon R Saunders
    posted to integrase phage by vwchan on 2006-06-20 18:57:39 as ** along with 1 group beta
  • Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences.
    Nucleic Acids Res (24 October 2006)
    by Derrick E Fouts
    posted to lateral_gene_transfer phage prediction prophage trna by vwchan on 2006-11-03 22:13:11 as ***** along with 1 group beta
  • Opinion: Viral metagenomics
    Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 504-510.
    by Robert A Edwards, Forest Rohwer
    posted to classification phage by vwchan on 2007-04-05 20:42:07 as ** along with 4 people and 1 group dayjm AaronDarling bluto mcox beta
  • Detecting overlapping coding sequences in virus genomes.
    BMC Bioinformatics, Vol. 7, No. 1. (16 February 2006)
    by Andrew E Firth, Chris M Brown
    posted to phage-genes phage by vwchan on 2007-01-26 00:53:17 as ** along with 1 person and 1 group Ayest beta
  • GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
    Nucleic Acids Res, Vol. 29, No. 12. (15 June 2001), pp. 2607-2618.
    by J Besemer, A Lomsadze, M Borodovsky
    posted to phage-genes phage by vwchan on 2007-01-26 00:38:11 as ** along with 3 people and 1 group dakelley azazello wenhan beta
  • Prophage insertion sites.
    Res Microbiol, Vol. 154, No. 4. (May 2003), pp. 277-282.
    by A Campbell
    posted to insertion-site phage prophage by vwchan on 2006-06-09 19:50:03 as ** along with 1 group beta
  • Fifty-three years since Hershey and Chase; much ado about pressure but which pressure is it?
    Virology, Vol. 344, No. 1. (5 January 2006), pp. 221-229.
    by Ian J Molineux
    posted to phage review by vwchan on 2006-06-20 18:39:12 as ** along with 1 group beta
  • Transfer RNA genes in pieces
    EMBO Reports, Vol. aop, No. current. (13 June 2008)
    by Lennart Randau, Dieter Soll
    posted to trna phage lateral_gene_transfer introns fragment by vwchan on 2008-10-07 19:48:13 as *****
  • Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion.
    Microbiol Mol Biol Rev, Vol. 68, No. 3. (September 2004), pp. 560-602.
    by H Brüssow, C Canchaya, WD Hardt
    posted to phage by vwchan on 2006-06-20 18:29:32 as ** along with 1 group beta
  • Recoding in bacteriophages and bacterial IS elements.
    Trends Genet, Vol. 22, No. 3. (March 2006), pp. 174-181.
    by PV Baranov, O Fayet, RW Hendrix, JF Atkins
    posted to phage-genes phage by vwchan on 2007-01-26 00:24:06 as ** along with 1 group beta
  • Role of Secondary Attachment Sites in Changing the Specificity of Site-Specific Recombination
    J. Bacteriol., Vol. 188, No. 9. (1 May 2006), pp. 3409-3411.
    by Edit Rutkai, Andrea Gyorgy, Laszlo Dorgai, Robert A Weisberg
    posted to insertion-site phage by vwchan on 2006-06-16 20:03:24 as ** along with 1 group beta
  • Bacteriophage taxonomy in 1987.
    Microbiol Sci, Vol. 4, No. 7. (July 1987), pp. 214-218.
    by HW Ackermann
    posted to classification phage by vwchan on 2007-04-05 20:55:04 as ** along with 1 group beta
  • Bacteriophages and pathogenicity: more than just providing a toxin?
    Microbes Infect, Vol. 8, No. 5. (April 2006), pp. 1365-1371.
    by CR Tinsley, E Bille, X Nassif
    posted to review phage by vwchan on 2007-01-21 19:09:28 as **** along with 1 person and 1 group pibm beta
  • Phage Taxonomy: We Agree To Disagree
    J. Bacteriol., Vol. 186, No. 21. (1 November 2004), pp. 7029-7031.
    by Daniel Nelson
    posted to phage by vwchan on 2006-06-16 19:20:22 as ** along with 1 group beta
  • Construction, characterization, and use of two Listeria monocytogenes site-specific phage integration vectors.
    J Bacteriol, Vol. 184, No. 15. (August 2002), pp. 4177-4186.
    by P Lauer, MY Chow, MJ Loessner, DA Portnoy, R Calendar
    posted to integration phage by vwchan on 2006-06-28 21:00:14 as ** along with 1 group beta
  • ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes.
    BMC Bioinformatics, Vol. 7 (2006)
    by FB Guo, CT Zhang
    posted to phage-genes phage by vwchan on 2007-01-26 00:30:57 as ** along with 1 group beta
  • Here a virus, there a virus, everywhere the same virus?
    Trends in Microbiology, Vol. 13, No. 6. (June 2005), pp. 278-284.
    by Mya Breitbart, Forest Rohwer
    posted to phage by saru on 2007-05-21 09:22:42 as **
  • Refactoring bacteriophage T7
    Molecular Systems Biology, Vol. 1, No. 1. (13 September 2005), pp. msb4100025-E1-msb4100025-E10.
    by Leon Y Chan, Sriram Kosuri, Drew Endy
    posted to phage synthetic_biology by rklancer on 2005-09-14 04:09:37 as *** along with 4 people tmmurali lingchong bobolino hukkinen
  • Genetic analysis of a bacterial genetic exchange element: The gene transfer agent of Rhodobacter capsulatus
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 2. (18 January 2000), pp. 859-864.
    by Andrew S Lang, JT Beatty
    posted to transfer phage minimal gta gene agent by ramykaram on 2008-09-07 23:46:45 as ***
  • In vivo acquisition of prophage in Streptococcus pyogenes.
    Trends Microbiol (30 May 2007)
    by Vincent A A Fischetti
    posted to comparative-genomics fischetti gas phage prophage by ramykaram on 2007-06-06 22:28:23 as *****
  • Fluorescence correlation spectroscopy as a method for assessment of interactions between phage displaying antibodies and soluble antigen
    Protein Sci, Vol. 10, No. 8. (1 August 2001), pp. 1522-1528.
    by Ann C Lagerkvist, Zeno Foldes-Papp, Mats A Persson, Rudolf Rigler
    posted to phage interaction fcs catrin01pd antibody by paulschlesinger on 2008-09-07 02:25:33 as **
  • Identification of Peptide Ligands for Target RNA Structures Derived from the HIV-1 Packaging Signal
    ChemBioChem, Vol. 4, No. 10. (26 September 2003), pp. 1093-1097.
    by Anette Pustowka, Julia Dietz, Jan Ferner, Michael Baumann, Dr, Margot Landersz, Christoph Königs, Harald Schwalbe, Dr, Ursula Dietrich, Dr
    posted to display hiv-1 interactions packaging peptides phage rna rna-peptide by P2324548 on 2005-06-08 15:30:08 as **
  • Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes
    Mol Biol Evol, Vol. 25, No. 4. (1 April 2008), pp. 762-777.
    by Gipsi Lima-Mendez, Jacques Van Helden, Ariane Toussaint, Raphael Leplae
    posted to algorithm graph horizontal mcl modularity networks phage transfer weighted by osilander on 2008-03-25 09:22:19 as ** along with 1 person cmzmasek
  • Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution
    Nature, Vol. 449, No. 7158., pp. 83-86.
    by Debbie Lindell, Jacob D Jaffe, Maureen L Coleman, Matthias E Futschik, Ilka M Axmann, Trent Rector, Gregory Kettler, Matthew B Sullivan, Robert Steen, Wolfgang R Hess, George M Church, Sallie W Chisholm
    posted to expression marine phage virus by mellabee on 2007-09-23 17:08:43 as ***** along with 2 people dayjm zwang
  • War is peace -- dispatches from the bacterial and phage killing fields
    Current Opinion in Microbiology, Vol. 8, No. 4. (August 2005), pp. 488-494.
    by Andre M Comeau, Henry M Krisch
    posted to co-evolution phage by mellabee on 2007-09-28 18:13:18 as *****
  • The Third Age of Phage
    PLoS Biology, Vol. 3, No. 5. (1 May 2005), e182.
    by Nicholas H Mann
    posted to phage by mellabee on 2007-09-23 10:39:08 as **** along with 1 person Katje
  • Genetic organization of the psbAD region in phages infecting marine Synechococcus strains.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 30. (27 July 2004), pp. 11007-11012.
    by A Millard, MR Clokie, DA Shub, NH Mann
    posted to marine phage by mcox on 2008-05-19 18:09:29 as **
  • Abundance of Virus-Sized Non-DNase-Digestible DNA (Coated DNA) in Eutrophic Seawater.
    Applied and environmental microbiology, Vol. 59, No. 3. (March 1993), pp. 712-717.
    by A Maruyama, M Oda, T Higashihara
    posted to dna marine phage viruses by mcox on 2008-05-15 15:58:33 as **
  • Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques.
    Applied and environmental microbiology, Vol. 64, No. 6. (June 1998), pp. 2051-2060.
    by NJ Fuller, WH Wilson, IR Joint, NH Mann
    posted to marine pcr phage qpcr by mcox on 2008-05-12 18:28:04 as **
  • CTXphi infection of Vibrio cholerae requires the tolQRA gene products.
    J Bacteriol, Vol. 182, No. 6. (March 2000), pp. 1739-1747.
    by AJ Heilpern, MK Waldor
    posted to ctx phage pilus tolq vibrio virulence by martainn on 2008-03-18 17:33:43 as **
  • A minimized M13 coat protein defines the requirements for assembly into the bacteriophage particle.
    J Mol Biol, Vol. 322, No. 2. (13 September 2002), pp. 357-367.
    by TA Roth, GA Weiss, C Eigenbrot, SS Sidhu
    posted to assembly evolution phage by martainn on 2008-02-13 18:22:21 as **
  • Structure of the filamentous phage pIV multimer by cryo-electron microscopy.
    J Mol Biol, Vol. 325, No. 3. (17 January 2003), pp. 461-470.
    by N Opalka, R Beckmann, N Boisset, MN Simon, M Russel, SA Darst
    posted to assembly phage secretin structure by martainn on 2008-02-13 10:43:38 as **
  • A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus
    Molecular Microbiology, Vol. 63, No. 4. (February 2007), pp. 1145-1157.
    by Derbise, Anne, Chenal-Francisque, Viviane, Pouillot, Flavie, Fayolle, Corinne, Prevost, Marie-Christine, Medigue, Claudine, Hinnebusch, Bernard Joseph, Carniel, Elisabeth
    posted to evolution phage virulence yersinia by martainn on 2008-02-21 17:08:51 as **
  • Assembling filamentous phage occlude pIV channels.
    Proc Natl Acad Sci U S A, Vol. 98, No. 16. (31 July 2001), pp. 9359-9364.
    by DK Marciano, M Russel, SM Simon
    posted to assembly phage secretin by martainn on 2008-02-13 10:39:12 as **
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