Tag phosphoproteomics [46 articles] Export

Recent papers classified by the tag phosphoproteomics.

	A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 11. (November 2009), pp. 2418-2431. by Vinh Nguyen, Lulu Cao, Jonathan T. Lin, et al.Norris Hung, Anna Ritz, Kebing Yu, Radu Jianu, Samuel P. Ulin, Benjamin J. Raphael, David H. Laidlaw, Laurent Brossay, Arthur R. Salomon posted to signaling phosphoproteomics by guhjy on 2009-12-04 15:20:59 as
	Use of stable isotope labeling by amino acids in cell culture (SILAC) for phosphotyrosine protein identification and quantitation. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 527 (2009) by Guoan Zhang, Thomas A. Neubert posted to silac phosphoproteomics book by guhjy on 2009-12-03 14:06:10 as
	Reconstructing Regulatory Kinase Pathways from Phosphopeptide Data: A Bioinformatics Approach [My Copy] Methods in molecular biology (Clifton, N.J.) In Phospho-Proteomics, Vol. 527 (2009), pp. 311-319. by Lawrence G. Puente, Robin E. C. Lee, Lynn A. Megeney edited by Marjo Graauw posted to phosphoproteomics kinase book bioinf by guhjy on 2009-11-26 12:51:31 as
	Global Effects of Kinase Inhibitors on Signaling Networks Revealed by Quantitative Phosphoproteomics [My Copy] Molecular & cellular proteomics : MCP In Mol Cell Proteomics, Vol. 8, No. 12. (1 December 2009), pp. 2796-2808. by Cuiping Pan, Jesper V. Olsen, Henrik Daub, Matthias Mann posted to silac phosphoproteomics kinase inhibitor by guhjy on 2009-11-12 09:18:49 as along with 1 person brianb
	Phosphoproteomic Study of Human Tubular Epithelial Cell in Response to Transforming Growth Factor-Beta-1-Induced Epithelial-to-Mesenchymal Transition. [My Copy] American journal of nephrology, Vol. 31, No. 1. (28 October 2009), pp. 24-35. by Yong-Xi X. Chen, Ya Li, Wei-Ming M. Wang, et al.Wen Zhang, Xiao-Nong N. Chen, Yin-Yin Y. Xie, Jing Lu, Qiu-Hua H. Huang, Nan Chen posted to tgfb pt phosphoproteomics ms itraq emt 1 by guhjy on 2009-11-10 09:26:20 as
	Global Analysis of Cdk1 Substrate Phosphorylation Sites Provides Insights into Evolution [My Copy] Science, Vol. 325, No. 5948. (25 September 2009), pp. 1682-1686. by Liam J. Holt, Brian B. Tuch, Judit Villen, Alexander D. Johnson, Steven P. Gygi, David O. Morgan posted to phosphorylation phosphoproteomics by nzm on 2009-10-01 04:16:59 as along with 5 people brianb walshtp djkt jjray neils
	Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. [My Copy] Molecular cell, Vol. 31, No. 3. (8 August 2008), pp. 438-448. by Henrik Daub, Jesper V. Olsen, Michaela Bairlein, et al.Florian Gnad, Felix S. Oppermann, Roman Körner, Zoltán Greff, György Kéri, Olaf Stemmann, Matthias Mann posted to quantitative proteomics phosphoproteomics kinaxo by yeastyboy to the group Drug-Design on 2009-09-09 21:44:26 as along with 4 people nzm fredrikberglund renatomilani guhjy
	Quantitative phosphoproteomics--an emerging key technology in signal-transduction research. [My Copy] Proteomics, Vol. 8, No. 21. (7 November 2008), pp. 4416-4432. by Thiemo B. Schreiber, Nina Mäusbacher, Susanne B. Breitkopf, Kathrin Grundner-Culemann, Henrik Daub posted to quantitative proteomics phosphoproteomics kinaxo by yeastyboy to the group Drug-Design on 2009-09-09 21:43:17 as along with 1 person guhjy
	Impact of phosphorylation on structure and thermodynamics of the interaction between the N-terminal domain of enzyme I and the histidine phosphocarrier protein of the bacterial phosphotransferase system. [My Copy] The Journal of biological chemistry, Vol. 283, No. 27. (4 July 2008), pp. 18980-18989. by Jeong-Yong Y. Suh, Mengli Cai, G. Marius Clore posted to phosphorylation phosphoproteomics by nzm on 2009-08-27 05:32:05 as
	The phosphoproteomics data explosion. [My Copy] Current opinion in chemical biology, Vol. 13, No. 4. (18 October 2009), pp. 414-420. by Simone Lemeer, Albert J. Heck posted to phosphoproteomics by sjcockell on 2009-07-31 13:45:29 as along with 1 person guhjy
	Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 8. (1 August 2009), pp. 1908-1920. by Maximiliane Hilger, Tiziana Bonaldi, Florian Gnad, Matthias Mann posted to silac ptp1b phosphorylation phosphoproteomics ko by guhjy on 2009-07-14 05:01:26 as along with 2 people brianb csardas
	Mapping protein post-translational modifications with mass spectrometry. [My Copy] Nature methods, Vol. 4, No. 10. (October 2007), pp. 798-806. by E. S. Witze, W. M. Old, K. A. Resing, N. G. Ahn posted to lcms phosphoproteomics phosphorylation review by nzm on 2009-07-14 03:09:03 as along with 1 person guhjy
	Mass spectrometry-based proteomics [My Copy] Nature, Vol. 422, No. 6928. (13 March 2003), pp. 198-207. by Ruedi Aebersold, Matthias Mann posted to lcms phosphoproteomics phosphorylation review by nzm on 2009-07-14 03:07:23 as along with 9 people nedwards emmackinnon jmeppley dgront frohike sverzijl olberd carlk taenneken
	The biological impact of mass-spectrometry-based proteomics [My Copy] Nature, Vol. 450, No. 7172. (13 December 2007), pp. 991-1000. by Benjamin F. Cravatt, Gabriel M. Simon, John R. Yates Iii posted to lcms phosphoproteomics phosphorylation review by nzm on 2009-07-14 03:06:19 as along with 6 people guhjy becarmson zwang Jporci phoenixzxl Yanno
	Quantitative analysis of cell signaling and drug action via mass spectrometry-based systems level phosphoproteomics. [My Copy] Proteomics, Vol. 9, No. 6. (March 2009), pp. 1469-1487. by Nathan C. Tedford, Amy B. Hall, James R. Graham, Cheryl E. Murphy, Neal F. Gordon, Jeffrey A. Radding posted to phosphoproteomics by guhjy on 2009-06-27 10:21:31 as
	The chemical biology of protein phosphorylation. [My Copy] Annual review of biochemistry, Vol. 78, No. 1. (2009), pp. 797-825. by Mary Katherine K. Tarrant, Philip A. Cole posted to phosphoproteomics kinase inhibitor by guhjy on 2009-06-13 04:05:33 as along with 1 person renatomilani
	Bioinformatics analysis of mass spectrometry-based proteomics data sets. [My Copy] FEBS letters, Vol. 583, No. 11. (5 June 2009), pp. 1703-1712. by Chanchal Kumar, Matthias Mann posted to phosphoproteomics phosphorylation protein proteomics review by nzm on 2009-06-09 04:47:58 as along with 6 people and 1 group greg ptrobajo ppgardne fishtank sjcockell brianb Journal picks
	Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction. [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 117. by Pawel Durek, Christian Schudoma, Wolfram Weckwerth, Joachim Selbig, Dirk Walther posted to phosphoproteomics phosphorylation by oelemento on 2009-05-31 19:20:06 as along with 2 people neils reyez
	Host cell interactome of tyrosine-phosphorylated bacterial proteins. [My Copy] Cell host & microbe, Vol. 5, No. 4. (23 April 2009), pp. 397-403. by M. Selbach, F. E. Paul, S. Brandt, et al.P. Guye, O. Daumke, S. Backert, C. Dehio, M. Mann posted to phosphoproteomics phosphorylation protein proteomics by nzm on 2009-05-16 00:38:36 as along with 2 people brianb renatomilani
	A multidimensional chromatography technology for in-depth phosphoproteome analysis. [My Copy] Molecular & cellular proteomics : MCP (11 April 2008) by Claudio P P. Albuquerque, Marcus B B. Smolka, Samuel H H. Payne, Vineet Bafna, Jimmy Eng, Huilin Zhou posted to phosphoproteomics phosphorylome by oelemento on 2009-05-07 16:56:17 as along with 2 people brianb guhjy
	Mapping pathways and phenotypes by systematic gene overexpression. [My Copy] Molecular cell, Vol. 21, No. 3. (3 February 2006), pp. 319-330. by R. Sopko, D. Huang, N. Preston, et al.G. Chua, B. Papp, K. Kafadar, M. Snyder, S. G. Oliver, M. Cyert, T. R. Hughes, C. Boone, B. Andrews posted to phosphoproteomics phosphorylation protein proteomics yeast by nzm on 2009-04-25 04:14:10 as along with 4 people and 1 group Annab nirfriedman nickluscombe koller EBI-regulation
	Phenotypic activation to discover biological pathways and kinase substrates. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 5, No. 13. (July 2006), pp. 1397-1402. by R. Sopko, B. Papp, S. G. Oliver, B. J. Andrews posted to genetic interaction phosphoproteomics phosphorylation protein proteomics yeast by nzm on 2009-04-25 04:11:01 as
	Linking the kinome and phosphorylome--a comprehensive review of approaches to find kinase targets. [My Copy] Molecular bioSystems, Vol. 4, No. 9. (September 2008), pp. 920-933. by Richelle Sopko, Brenda J. Andrews posted to phosphoproteomics phosphorylation protein proteomics review by nzm on 2009-04-25 04:08:17 as along with 3 people hryk oelemento guhjy
	Linear motif atlas for phosphorylation-dependent signaling. [My Copy] Science signaling, Vol. 1, No. 35. (2 September 2008), ra2. by Martin Lee L. Miller, Lars Juhl J. Jensen, Francesca Diella, et al.Claus Jørgensen, Michele Tinti, Lei Li, Marilyn Hsiung, Sirlester A. Parker, Jennifer Bordeaux, Thomas Sicheritz-Ponten, Marina Olhovsky, Adrian Pasculescu, Jes Alexander, Stefan Knapp, Nikolaj Blom, Peer Bork, Shawn Li, Gianni Cesareni, Tony Pawson, Benjamin E. Turk, Michael B. Yaffe, Søren Brunak, Rune Linding posted to phosphoproteomics phosphorylation protein proteomics by nzm on 2009-04-22 10:44:50 as along with 5 people hryk guhjy noraziz neils renatomilani
	A quantitative atlas of mitotic phosphorylation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 31. (5 August 2008), pp. 10762-10767. by Noah Dephoure, Chunshui Zhou, Judit Villén, et al.Sean A. Beausoleil, Corey E. Bakalarski, Stephen J. Elledge, Steven P. Gygi posted to cell-cycle lcms phosphoproteomics phosphorylation protein proteomics by nzm on 2009-04-22 10:36:32 as along with 5 people lyrial fredrikberglund brianb guhjy renatomilani
	ATM and ATR Substrate Analysis Reveals Extensive Protein Networks Responsive to DNA Damage [My Copy] Science, Vol. 316, No. 5828. (25 May 2007), pp. 1160-1166. by Shuhei Matsuoka, Bryan A. Ballif, Agata Smogorzewska, et al.Robert E. Mcdonald, Kristen E. Hurov, Ji Luo, Corey E. Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal, Yosef Shiloh, Steven P. Gygi, Stephen J. Elledge posted to dna-damage phosphoproteomics phosphorylation protein proteomics by nzm on 2009-04-22 10:33:32 as along with 9 people and 1 group zhlei guhjy ahab2001 jfr cactus stonest lonettma RyanGray taten 8_01
	Directional and quantitative phosphorylation networks [My Copy] Brief Funct Genomic Proteomic, Vol. 7, No. 1. (1 January 2008), pp. 17-26. by Claus Jorgensen, Rune Linding posted to lcms phosphoproteomics phosphorylation protein proteomics review by nzm on 2009-04-22 10:29:29 as along with 4 people hryk coela guhjy renatomilani
	Getting connected: analysis and principles of biological networks [My Copy] Genes & Development, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024. by Xiaowei Zhu, Mark Gerstein, Michael Snyder posted to interaction phosphoproteomics phosphorylation protein proteomics review yeast by nzm on 2009-04-03 08:51:48 as along with 16 people abhishek_tiwari arsyed jaimie ptrobajo davidecellai pengchy jfr balajis grahamc fishtank nedwards naegele Evangelia kristen carlk renatomilani
	Functional and quantitative proteomics using SILAC [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 12., pp. 952-958. by Matthias Mann posted to lcms phosphoproteomics phosphorylation protein proteomics silac by nzm on 2009-04-03 07:10:46 as
	Modularity of MAP kinases allows deformation of their signalling pathways [My Copy] Nature Cell Biology, Vol. 11, No. 4. (22 March 2009), pp. 484-491. by Areez Mody, Joan Weiner, Sharad Ramanathan posted to phosphoproteomics phosphorylation yeast by nzm on 2009-04-03 04:47:48 as along with 1 person renatomilani
	Global analysis of protein phosphorylation in yeast [My Copy] Nature, Vol. 438, No. 7068., pp. 679-684. by Jason Ptacek, Geeta Devgan, Gregory Michaud, et al.Heng Zhu, Xiaowei Zhu, Joseph Fasolo, Hong Guo, Ghil Jona, Ashton Breitkreutz, Richelle Sopko, Rhonda R. Mccartney, Martin C. Schmidt, Najma Rachidi, Soo-Jung Lee, Angie S. Mah, Lihao Meng, Michael J. R. Stark, David F. Stern, Claudio De Virgilio, Mike Tyers, Brenda Andrews, Mark Gerstein, Barry Schweitzer, Paul F. Predki, Michael Snyder posted to phosphoproteomics phosphorylation proteomics yeast by nzm on 2009-03-23 09:46:24 as along with 11 people and 1 group rsaito nedwards coela MarcJungbluth tmmurali tuck balabu nickluscombe koller carlk neils EBI-regulation
	The Protein Kinase Complement of the Human Genome [My Copy] Science, Vol. 298, No. 5600. (6 December 2002), pp. 1912-1934. by G. Manning, D. B. Whyte, R. Martinez, T. Hunter, S. Sudarsanam posted to phosphoproteomics phosphorylation proteomics by nzm on 2009-03-23 09:44:20 as along with 14 people guhjy saradtc nedwards catcremona Yanno ceolas tjimenez kuhn aqeel lenov Evangelia renatomilani taten daed
	Systematic discovery of in vivo phosphorylation networks. [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426. by Rune Linding, Lars Juhl J. Jensen, Gerard J. Ostheimer, et al.Marcel A. van Vugt, Claus Jørgensen, Ioana M. Miron, Francesca Diella, Karen Colwill, Lorne Taylor, Kelly Elder, Pavel Metalnikov, Vivian Nguyen, Adrian Pasculescu, Jing Jin, Jin Gyoon G. Park, Leona D. Samson, James R. Woodgett, Robert B. Russell, Peer Bork, Michael B. Yaffe, Tony Pawson posted to interaction motif phosphoproteomics phosphorylation protein proteomics by nzm on 2009-03-20 14:02:02 as along with 21 people and 2 groups rsaito jaimie nedwards MatthiasReimann ptrobajo guhjy skhadar julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen Evangelia renatomilani carlk daed chad_davis bouncingbudha SysbioMPI-TCells Durbin group
	Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks. [My Copy] Cell, Vol. 127, No. 3. (3 November 2006), pp. 635-648. by Jesper V V. Olsen, Blagoy Blagoev, Florian Gnad, et al.Boris Macek, Chanchal Kumar, Peter Mortensen, Matthias Mann posted to lcms phosphoproteomics phosphorylation proteomics silac by nzm on 2009-03-20 13:59:53 as along with 7 people rsaito coela guhjy aswin csardas carlk nsamways
	In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution. [My Copy] Molecular & cellular proteomics : MCP (9 January 2009) by Nozomu Yachie, Rintaro Saito, Junichi Sugahara, Masaru Tomita, Yasushi Ishihama posted to evolutionary_model ishihama phosphoproteomics phosphorylation proteomics yachie by nzm on 2009-03-20 12:19:54 as
	NetPhosBac - A predictor for Ser/Thr phosphorylation sites in bacterial proteins13 [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2008), NA. by Martin L. Miller, Boumediene Soufi, Carsten Jers, Nikolaj Blom, Boris Macek, Ivan Mijakovic posted to ecoli phosphoproteomics phosphorylation site by csardas on 2008-12-26 13:04:05 as
	Global and site-specific quantitative phosphoproteomics: principles and applications. [My Copy] Annual review of pharmacology and toxicology, Vol. 49 (3 October 2009), pp. 199-221. by Boris Macek, Matthias Mann, Jesper V. Olsen posted to phosphoproteomics by guhjy on 2008-10-10 05:19:33 as along with 1 person hryk
	Dissection of the insulin signaling pathway via quantitative phosphoproteomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2451-2456. by Marcus KrÃ¼ger, Irina Kratchmarova, Blagoy Blagoev, Yu-Hua Tseng, C. Ronald Kahn, Matthias Mann posted to silac signaling phosphoproteomics insulin by guhjy on 2008-08-22 15:10:48 as along with 3 people renatomilani Evangelia brianb
	SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides. [My Copy] Molecular & cellular proteomics : MCP, Vol. 7, No. 4. (April 2008), pp. 661-671. by T. E. Thingholm, O. N. Jensen, P. J. Robinson, M. R. Larsen posted to elution from imac monophosphorylated multiply peptides phosphoproteomics phosphorylated rapid separation sequential simac strategy by BMBatSDU on 2008-08-01 09:43:27 as
	PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. [My Copy] Genome biology, Vol. 8, No. 11. (2007) by Florian Gnad, Shubin Ren, Juergen Cox, et al.Jesper V. Olsen, Boris Macek, Mario Oroshi, Matthias Mann posted to bioinformatics phosphoproteomics phosphorylation ptm site by csardas on 2008-07-10 04:18:50 as along with 3 people nzm niallhaslam neils
	Global phosphoproteome of HT-29 human colon adenocarcinoma cells. [My Copy] J Proteome Res, Vol. 4, No. 4. (g 2005), pp. 1339-1346. by J. E. Kim, S. R. Tannenbaum, F. M. White posted to cdp_center phosphoproteomics by cdppublications on 2007-04-04 15:10:09 as along with 1 group CDP
	Quantitative analysis of phosphotyrosine signaling networks triggered by CD3 and CD28 costimulation in jurkat cells. [My Copy] J Immunol, Vol. 176, No. 5. (1 March 2006), pp. 2833-2843. by J. E. Kim, F. M. White posted to cdp_center phosphoproteomics proteomics by cdppublications on 2007-04-03 16:52:29 as along with 2 people and 3 groups rhem1224 julius TCR_Signaling SysbioMPI-TCells CDP
	Phosphoproteomic approaches to elucidate cellular signaling networks. [My Copy] Curr Opin Biotechnol (26 June 2006) by Katrin Schmelzle, Forest M M. White posted to proteomics phosphoproteomics cell_signalling by cdppublications to the group CDP on 2007-04-03 16:49:50 as along with 3 people and 2 groups guhjy dchughes lhonigberg G4ID Genetics-of-Gambling
	A probability-based approach for high-throughput protein phosphorylation analysis and site localization [My Copy] Nature Biotechnology, Vol. 24, No. 10. (10 September 2006), pp. 1285-1292. by Sean A. Beausoleil, Judit Villen, Scott A. Gerber, John Rush, Steven P. Gygi posted to bioinformatics phosphoproteomics phosphorylation proteomics sequest by csardas on 2007-03-20 14:13:09 as along with 6 people saradtc alexgeorgiou guhjy wnpx Ao_Li2007 Thomasah
	An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets [My Copy] Nature Biotechnology, Vol. 23, No. 11. (04 November 2005), pp. 1391-1398. by Daniel Schwartz, Steven P. Gygi posted to bioinformatics mass motif phosphoproteomics phosphorylation proteomics by csardas on 2006-11-22 18:04:19 as along with 1 person rsaito
	Phosphoproteomics: new insights into cellular signaling. [My Copy] Genome Biol, Vol. 6, No. 9. (2005) by M. Mumby, D. Brekken posted to phosphoproteomics phosphorylation proteomics by csardas on 2006-08-29 05:16:15 as

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phosphorylation	30
proteomics	28
protein	13
lcms	8
review	7
silac	6
yeast	5
kinaxo	4
quantitative	4
bioinformatics	3
cdp_center	3
interaction	3
kinase	3
book	2
cell-cycle	2
cell_signalling	2
inhibitor	2
motif	2
signaling	2
site	2
1	1
bioinf	1
dna-damage	1
ecoli	1
elution	1
emt	1
evolutionary_model	1
from	1
genetic	1
imac	1
insulin	1
ishihama	1
itraq	1
ko	1
mass	1
monophosphorylated	1
ms	1
multiply	1
peptides	1
phosphorylated	1
phosphorylome	1
pt	1
ptm	1
ptp1b	1
rapid	1
separation	1
sequential	1
sequest	1
simac	1
strategy	1
tgfb	1
yachie	1

Tag phosphoproteomics [46 articles] Export

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