Tag poisson-boltzmann [57 articles] Export

Recent papers classified by the tag poisson-boltzmann.

	The flexibility of polyelectrolyte molecules [My Copy] The Journal of Chemical Physics, Vol. 76, No. 12. (1982), pp. 6346-6353. by Marshall Fixman posted to polyelectrolyte poisson-boltzmann by afenley on 2009-10-22 20:22:46 as along with 1 person Elena_Zubova
	Free Energy Landscapes of Encounter Complexes in Protein-Protein Association [My Copy] Vol. 76, No. 3. (1 March 1999), pp. 1166-1178. by Carlos J. Camacho, Zhiping Weng, Sandor Vajda, Charles Delisi posted to poisson-boltzmann free-energy encounter-complex by ras on 2009-08-21 15:39:46 as
	IONIC EFFECTS BEYOND POISSON-BOLTZMANN THEORY [My Copy] Annual Review of Physical Chemistry, Vol. 50, No. 1. (1999), pp. 145-165. by Vojko Vlachy posted to poisson-boltzmann ion by ras on 2009-08-21 14:42:14 as along with 3 people scampos flbarroso softsimu
	Electrostatics of nanosystems: Application to microtubules and the ribosome [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 18. (28 August 2001), pp. 10037-10041. by Nathan A. Baker, David Sept, Simpson Joseph, Michael J. Holst, J. Andrew McCammon posted to poisson-boltzmann electrostatics by ras on 2009-08-21 01:23:09 as along with 7 people and 1 group nickolay Martin8223 flbarroso ssomani gane5h qwermish mschofie structure-bii
	The Smoluchowski-Poisson-Boltzmann description of ion diffusion at charged interfaces. [My Copy] Biophysical journal, Vol. 46, No. 3. (September 1984), pp. 387-407. by D. Y. Chan, B. Halle posted to charged-interface diffusion physics poisson-boltzmann theory by chiufanlee on 2009-06-12 13:10:04 as
	Solution of the Poisson--Boltzmann Equation about a Cylindrical Particle [My Copy] The Journal of Chemical Physics, Vol. 52, No. 2. (1970), pp. 953-959. by J. R. Philip, R. A. Wooding posted to electrostatics physics poisson-boltzmann rod theory by chiufanlee on 2009-06-11 16:26:26 as
	DIRECT SOLUTION OF THE POISSON EQUATION FOR BIOMOLECULES OF ARBITRARY SHAPE, POLARIZABILITY DENSITY, AND CHARGE DISTRIBUTION [My Copy] Annals of the New York Academy of Sciences, Vol. 303, No. Electrical Properties of Biological Polymers Water and Membranes. (1977), pp. 22-37. by William H. Orttung posted to finite-element-method poisson poisson-boltzmann by stephenbond on 2009-04-03 00:12:42 as
	A smooth permittivity function for Poisson-Boltzmann solvation methods [My Copy] Journal of Computational Chemistry, Vol. 22, No. 6. (2001), pp. 608-640. by J. Andrew Grant, Barry T. Pickup, Anthony Nicholls posted to poisson-boltzmann by stephenbond on 2009-04-02 23:58:51 as along with 4 people nickolay dmitry_s_yershov cen4ik onufriev
	Solvent-accessible surfaces of proteins and nucleic acids [My Copy] Science, Vol. 221, No. 4612. (19 August 1983), pp. 709-713. by M. L. Connolly posted to poisson poisson-boltzmann by stephenbond on 2009-04-02 23:48:08 as along with 2 people flbarroso cen4ik
	A new method for computing the macromolecular electric potential [My Copy] Journal of Molecular Biology, Vol. 186, No. 4. (20 December 1985), pp. 815-820. by R. Zauhar, R. Morgan posted to boundary_element_method boundary_integral_equation poisson-boltzmann by stephenbond on 2009-04-02 23:39:51 as along with 2 people dmitry_s_yershov flbarroso
	Adaptive multilevel finite element solution of the Poisson-Boltzmann equation I. Algorithms and examples [My Copy] Journal of Computational Chemistry, Vol. 21, No. 15. (2000), pp. 1319-1342. by M. Holst, N. Baker, F. Wang posted to finite-element-method multigrid poisson-boltzmann by stephenbond on 2009-04-02 23:33:41 as along with 1 person dmitry_s_yershov
	Adaptive multilevel finite element solution of the Poisson-Boltzmann equation II. Refinement at solvent-accessible surfaces in biomolecular systems [My Copy] Journal of Computational Chemistry, Vol. 21, No. 15. (2000), pp. 1343-1352. by N. Baker, M. Holst, F. Wang posted to finite-element-method multigrid poisson-boltzmann by stephenbond on 2009-04-02 23:30:50 as along with 1 person dmitry_s_yershov
	A combined iterative and boundary-element approach for solution of the nonlinear Poisson-Boltzmann equation [My Copy] Journal of the American Chemical Society, Vol. 114, No. 9. (1 April 1992), pp. 3189-3196. by Y. N. Vorobjev, J. A. Grant, H. A. Scheraga posted to boundary_element_method poisson-boltzmann by stephenbond on 2009-04-02 23:21:43 as along with 1 person dmitry_s_yershov
	A fast adaptive multigrid boundary element method for macromolecular electrostatic computations in a solvent [My Copy] Journal of Computational Chemistry, Vol. 18, No. 4. (1997), pp. 569-583. by Yury N. Vorobjev, Harold A. Scheraga posted to boundary_element_method multigrid poisson poisson-boltzmann by stephenbond on 2009-04-02 23:08:08 as
	Theory of Solutions of Molecules Containing Widely Separated Charges with Special Application to Zwitterions [My Copy] The Journal of Chemical Physics, Vol. 2, No. 7. (1934), pp. 351-361. by John G. Kirkwood posted to generalized_born helmholtz poisson poisson-boltzmann by stephenbond on 2009-04-02 16:39:44 as along with 2 people dmitry_s_yershov mikaellund
	Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures [My Copy] Journal of Computational Chemistry, Vol. 25, No. 2. (30 January 2004), pp. 265-284. by Michael Feig, Alexey Onufriev, Michael S. Lee, Wonpil Im, David A. Case, Charles L. Brooks posted to generalized_born poisson poisson-boltzmann by stephenbond on 2009-03-31 21:26:45 as along with 4 people itolokh allmensch yxue Lombardo_7
	A boundary element method for molecular electrostatics with electrolyte effects [My Copy] Journal of Computational Chemistry, Vol. 11, No. 9. (1990), pp. 1080-1086. by Byung J. Yoon, A. M. Lenhoff posted to electrostatics poisson solvation_energy boundary_elements poisson-boltzmann by dmitry_s_yershov on 2009-03-26 18:12:01 as along with 1 person stephenbond
	Computation of molecular electrostatics with boundary element methods [My Copy] Vol. 73, No. 4. (1 October 1997), pp. 1830-1841. by J. Liang, S. Subramaniam posted to boundary_elements boundary_integral poisson poisson-boltzmann by dmitry_s_yershov on 2009-03-25 15:03:58 as
	Treatment of charge singularities in implicit solvent models [My Copy] The Journal of Chemical Physics, Vol. 127, No. 11. (2007) by Weihua Geng, Sining Yu, Guowei Wei posted to finite-differences poisson poisson-boltzmann by stephenbond on 2009-03-24 19:19:29 as along with 2 people and 1 group dmitry_s_yershov sobolevnrm baker-group
	Solvation of complex molecules in a polar liquid: An integral equation theory [My Copy] The Journal of Chemical Physics, Vol. 104, No. 21. (1996), pp. 8678-8689. by Dmitrii Beglov, Benoît Roux posted to integral_equations poisson poisson-boltzmann by stephenbond on 2009-03-24 18:50:44 as along with 2 people dmitry_s_yershov onufriev
	Semianalytical treatment of solvation for molecular mechanics and dynamics [My Copy] Journal of the American Chemical Society, Vol. 112, No. 16. (1 August 1990), pp. 6127-6129. by W. Clark Still, Anna Tempczyk, Ronald C. Hawley, Thomas Hendrickson posted to poisson-boltzmann by stephenbond on 2009-03-24 18:45:49 as along with 6 people chemrahul82 blackgen Lombardo_7 GermanErlenkamp dmitry_s_yershov dfgreen
	A Poisson--Boltzmann dynamics method with nonperiodic boundary condition [My Copy] The Journal of Chemical Physics, Vol. 119, No. 21. (2003), pp. 11035-11047. by Qiang Lu, Ray Luo posted to finite-differences poisson-boltzmann by stephenbond on 2009-03-24 18:35:49 as along with 1 person dmitry_s_yershov
	Order N algorithm for computation of electrostatic interactions in biomolecular systems [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 51. (19 December 2006), pp. 19314-19319. by Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, J. Andrew Mccammon posted to boundary_integral_equation poisson-boltzmann by stephenbond on 2009-03-24 18:31:16 as along with 5 people flbarroso dmitry_s_yershov eyliu choonpeng qwermish
	Multigrid solution of the Poisson - Boltzmann equation [My Copy] Journal of Computational Chemistry, Vol. 14, No. 1. (1993), pp. 105-113. by Michael Holst, Faisal Saied posted to finite-volume multigrid poisson-boltzmann by stephenbond on 2009-03-24 18:14:52 as along with 1 person dmitry_s_yershov
	Continuum solvation model: Computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation [My Copy] Computer Physics Communications, Vol. 111, No. 1-3. (June 1998), pp. 59-75. by Wonpil Im, Dmitrii Beglov, Benoît Roux posted to poisson-boltzmann by stephenbond on 2009-03-24 16:58:07 as along with 2 people dmitry_s_yershov onufriev
	Comparison of implicit solvent models for the simulation of protein-surface interactions [My Copy] Journal of Computational Chemistry, Vol. 27, No. 16. (2006), pp. 1908-1922. by Yu Sun, Robert A. Latour posted to coarse-graining free_energy poisson-boltzmann by stephenbond on 2009-03-24 16:06:56 as along with 2 people dmitry_s_yershov hlwoodcock
	Electrodiffusion: A continuum modeling framework for biomolecular systems with realistic spatiotemporal resolution [My Copy] The Journal of Chemical Physics, Vol. 127, No. 13. (2007) by Benzhuo Lu, Y. C. Zhou, Gary A. Huber, Stephen D. Bond, Michael J. Holst, Andrew J. Mccammon posted to electrodiffusion electrostatics method_of_lines poisson-boltzmann poisson-nernst-planck by stephenbond on 2009-03-24 00:19:28 as along with 1 person and 1 group sobolevnrm baker-group
	Brownian dynamics simulation of diffusion-influenced bimolecular reactions [My Copy] The Journal of Chemical Physics, Vol. 80, No. 4. (1984), pp. 1517-1524. by Scott H. Northrup, Stuart A. Allison, Andrew J. Mccammon posted to brownian_dynamics electrodiffusion electrostatics poisson poisson-boltzmann by stephenbond on 2009-03-23 23:56:44 as along with 3 people choonpeng barry Martin8223
	Implicit solvent models [My Copy] Biophysical Chemistry, Vol. 78, No. 1-2. (5 April 1999), pp. 1-20. by Benoît Roux, Thomas Simonson posted to electrostatics poisson-boltzmann by stephenbond on 2009-03-23 22:43:56 as along with 3 people dmitry_s_yershov Martin8223 qwermish
	Classical electrostatics in biology and chemistry. [My Copy] Science (New York, N.Y.), Vol. 268, No. 5214. (26 May 1995), pp. 1144-1149. by B. Honig, A. Nicholls posted to electrostatics pka poisson poisson-boltzmann by stephenbond on 2009-03-23 22:38:14 as along with 4 people onufriev dmitry_s_yershov flbarroso apostola
	Calculation of the electric potential in the active site cleft due to alpha-helix dipoles [My Copy] Journal of Molecular Biology, Vol. 157, No. 4. (June 1982), pp. 671-679. by J. Warwicker, H. C. Watson posted to electrostatics poisson poisson-boltzmann by stephenbond on 2009-03-23 22:20:04 as along with 3 people Scis0000002 dmitry_s_yershov flbarroso
	Electrostatic calculations for an ion channel. I. Energy and potential profiles and interactions between ions [My Copy] Biophysical Journal, Vol. 22, No. 2. (May 1978), pp. 209-219. by D. Levitt posted to electrostatics poisson poisson-boltzmann by stephenbond on 2009-03-23 22:01:43 as along with 1 person dmitry_s_yershov
	Computational Modeling of Three-Dimensional Electrodiffusion in Biological Systems: Application to the Node of Ranvier [My Copy] Vol. 95, No. 6. (15 September 2008), pp. 2624-2635. by Courtney L. Lopreore, Thomas M. Bartol, Jay S. Coggan, et al.Daniel X. Keller, Gina E. Sosinsky, Mark H. Ellisman, Terrence J. Sejnowski posted to electrostatics finite-volume poisson-boltzmann poisson-nernst-planck by stephenbond on 2009-03-23 21:17:13 as
	Implicit Solvent Electrostatics in Biomolecular Simulation [My Copy] New Algorithms for Macromolecular Simulation (2006), pp. 263-295. by Nathan Baker, Donald Bashford, David Case posted to electrostatics poisson-boltzmann by stephenbond on 2009-03-23 18:57:59 as along with 6 people flbarroso Scis0000002 dmitry_s_yershov sunhwan onufriev qwermish
	The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology. [My Copy] Journal of molecular recognition : JMR, Vol. 15, No. 6. (c 2002), pp. 377-392. by F. Fogolari, A. Brigo, H. Molinari posted to electrostatics poisson poisson-boltzmann by stephenbond on 2009-03-23 18:53:39 as along with 3 people Martin8223 flbarroso dmitry_s_yershov
	Calculating the electrostatic potential of molecules in solution: Method and error assessment [My Copy] Journal of Computational Chemistry, Vol. 9, No. 4. (1988), pp. 327-335. by Michael K. Gilson, Kim A. Sharp, Barry H. Honig posted to electrostatics poisson-boltzmann software by dfgreen on 2009-01-08 23:13:27 as along with 2 people dmitry_s_yershov RamuAnandakrishnan
	Calculation of electrostatic potentials in an enzyme active site [My Copy] Nature, Vol. 330, No. 6143. (5 November 1987), pp. 84-86. by Michael K. Gilson, Barry H. Honig posted to electrostatics poisson-boltzmann by dfgreen on 2009-01-08 22:52:32 as along with 1 person flbarroso
	Calculation of the total electrostatic energy of a macromolecular system: Solvation energies, binding energies, and conformational analysis [My Copy] Proteins: Structure, Function, and Genetics, Vol. 4, No. 1. (1988), pp. 7-18. by Michael K. Gilson, Barry Honig posted to binding electrostatics poisson-boltzmann solvation by dfgreen on 2009-01-08 22:50:19 as along with 1 person flbarroso
	Macroscopic models of aqueous solutions: biological and chemical applications [My Copy] The Journal of Physical Chemistry, Vol. 97, No. 6. (1 February 1993), pp. 1101-1109. by Barry Honig, Kim Sharp, An S. Yang posted to binding electrostatics poisson-boltzmann protein by dfgreen on 2009-01-08 22:49:05 as
	Electrostatic Interactions in Macromolecules: Theory and Applications [My Copy] Annual Review of Biophysics and Biophysical Chemistry, Vol. 19, No. 1. (1990), pp. 301-332. by K. A. Sharp, B. Honig posted to electrostatics poisson-boltzmann review by dfgreen on 2009-01-08 22:47:45 as along with 3 people scampos flbarroso RamuAnandakrishnan
	Calculating total electrostatic energies with the nonlinear Poisson-Boltzmann equation [My Copy] The Journal of Physical Chemistry, Vol. 94, No. 19. (1990), pp. 7684-7692. by Kim A. Sharp, Barry Honig posted to electrostatics poisson-boltzmann solvation by dfgreen on 2009-01-08 22:46:01 as along with 2 people Elena_Zubova dmitry_s_yershov
	Accurate Calculation of Hydration Free Energies Using Macroscopic Solvent Models [My Copy] The Journal of Physical Chemistry, Vol. 98, No. 7. (1 February 1994), pp. 1978-1988. by Doree Sitkoff, Kim A. Sharp, Barry Honig posted to electrostatics poisson-boltzmann solvation by dfgreen on 2009-01-08 22:45:17 as along with 4 people melo_mcr onufriev dmitry_s_yershov flbarroso
	Image charge approximations of reaction fields in solvents with arbitrary ionic strength [My Copy] Journal of Computational Physics (07 December 2008) by Z. Xu, S. Deng, W. Cai posted to electrostatics poisson-boltzmann by afenley on 2009-01-03 01:32:51 as
	Improving implicit solvent simulations: a Poisson-centric view [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 2. (April 2005), pp. 137-143. by N. Baker posted to implicit-solvent poisson-boltzmann water by softsimu on 2008-11-12 20:19:53 as along with 5 people oteri flbarroso ttjoseph qwermish RamuAnandakrishnan
	Nonlinear Poisson--Boltzmann model of charged lipid membranes: Accounting for the presence of zwitterionic lipids [My Copy] The Journal of Chemical Physics, Vol. 129, No. 12. (2008) by Demmelash H. Mengistu, Sylvio May posted to lipid membrane mengis08pdf model poisson-boltzmann by paulschlesinger on 2008-09-30 01:58:10 as along with 2 people agrossfield sunhwan
	An analytical approach to computing biomolecular electrostatic potential. I. Derivation and analysis [My Copy] The Journal of Chemical Physics, Vol. 129, No. 7. (2008) by Andrew T. Fenley, John C. Gordon, Alexey Onufriev posted to electrostatics implicit_solvation poisson-boltzmann by afenley on 2008-09-17 20:50:21 as along with 2 people RamuAnandakrishnan agrossfield
	Approximate analytical solutions to the Poisson--Boltzmann equation [My Copy] The Journal of Chemical Physics, Vol. 63, No. 4. (1975), pp. 1699-1700. by J. Y. Parlange posted to analytical equation parlang08pdf poisson-boltzmann solution by paulschlesinger on 2008-09-08 01:35:37 as
	Assessing implicit models for nonpolar mean solvation forces: The importance of dispersion and volume terms [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 22. (30 May 2006), pp. 8331-8336. by Jason A. Wagoner, Nathan A. Baker posted to electrostatics poisson-boltzmann solvation by rok on 2008-08-22 18:40:33 as along with 3 people ahmetbakan afenley flbarroso
	Poisson-Boltzmann Theory for Membranes with Mobile Charged Lipids and the pH-Dependent Interaction of a DNA Molecule with a Membrane [My Copy] Biophys. J., Vol. 82, No. 1. (1 January 2002), pp. 76-92. by Christian Fleck, Roland R. Netz, Hans H. von Grunberg posted to biomembranes debye-huckel electrostatics nucleic_acids pka poisson-boltzmann solvation by rok on 2008-08-21 19:54:50 as along with 2 people and 1 group softsimu sobolevnrm baker-group
	Phase separation, interface properties, and charge density waves in a simplified model for a macroion suspension [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 73, No. 1. (2006) by Patrick B. Warren posted to poisson-boltzmann by softsimu on 2008-02-16 23:24:46 as

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electrostatics	33
poisson	14
solvation	5
free-energy	4
multigrid	4
boundary_element_method	3
finite-element-method	3
binding	2
biomolecule-sim	2
boundary_elements	2
boundary_integral_equation	2
debye-huckel	2
electrodiffusion	2
fem-adaptivity	2
finite-differences	2
finite-volume	2
generalized_born	2
implicit_solvation	2
physics	2
pka	2
poisson-nernst-planck	2
polyelectrolyte	2
protein	2
theory	2
analytical	1
biomembranes	1
boundary_integral	1
brownian_dynamics	1
charged-interface	1
coarse-graining	1
complexation	1
continuum-electrostatics	1
counterion-condensation	1
diffusion	1
dna	1
encounter-complex	1
equation	1
fem	1
finite_element	1
free_energy	1
generalized-born	1
helmholtz	1
hydrophobicity	1
implicit-solvent	1
integral_equations	1
ion	1
ions	1
lipid	1
lysozyme	1
membrane	1
membranes	1
mengis08pdf	1
method_of_lines	1
micelles	1
model	1
nucleic_acids	1
oppositely-charged	1
parlang08pdf	1
proteins	1
review	1
rod	1
software	1
solution	1
solvation_energy	1
thermodynamics	1
water	1

Tag poisson-boltzmann [57 articles] Export

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