Tag polyadenylation [51 articles] Export Sort

Recent papers classified by the tag polyadenylation.

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	RNA processing and its regulation: global insights into biological networks. [My Copy] Nature reviews. Genetics, Vol. 11, No. 1. (01 January 2010), pp. 75-87. by Donny D. Licatalosi, Robert B. Darnell posted to validation polyadenylation maps insights_into_mechanisms global_insights complexity biological_networks alternative_splicing by darnelr to the group Molecular Biology on 2009-12-28 11:05:45 as along with 2 people TRHvidsten guhjy
	Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 41. (10 October 2006), pp. 14994-15001. by Alan J. Herr, Attila Molnàr, Alex Jones, David C. Baulcombe posted to polyadenylation mirna genetic_screen flowering arabidopsis by ongenetics on 2009-11-24 11:31:36 as along with 1 person braingrind
	Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 673-684. by Christine Mayr, David P. Bartel posted to polyadenylation mirna alternative_3end 3utr by ongenetics on 2009-11-24 11:27:51 as along with 12 people and 1 group provero frohike jwfoley colinveal bertelsen manto hcoller gbloeb jbhiatt ashkelon13 megraw rschulz cube_and_beyond
	Pre-mRNA processing reaches back to transcription and ahead to translation. [My Copy] Cell, Vol. 136, No. 4. (20 February 2009), pp. 688-700. by M. J. Moore, N. J. Proudfoot posted to translation transcription splicing rna polyadenylation by aprickett on 2009-11-05 15:04:36 as along with 2 people heliopais rschulz
	Alternative polyadenylation: A mechanism maximizing transcriptome diversity in higher eukaryotes. [My Copy] Plant signaling & behavior, Vol. 4, No. 5. (May 2009), pp. 440-442. by Denghui Xing, Qingshun Quinn Q. Li posted to transcription polyadenylation plants diversity by clearbluespring on 2009-10-12 17:14:46 as along with 2 people dchughes aprickett
	Regulation of alternative polyadenylation by genomic imprinting [My Copy] Genes & Development, Vol. 22, No. 9. (1 May 2008), pp. 1141-1146. by Andrew J. Wood, Reiner Schulz, Kathryn Woodfine, et al.Katarzyna Koltowska, Colin V. Beechey, Jo Peters, Deborah Bourcâhis, Rebecca J. Oakey posted to polyadenylation imprinting by aprickett on 2009-09-28 11:28:50 as along with 4 people and 1 group stefanjanusz rschulz bertelsen sebastien_vigneau Imprinting
	A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation. [My Copy] Genome research, Vol. 18, No. 8. (16 August 2008), pp. 1224-1237. by Zheng Lian, Alexander Karpikov, Jin Lian, et al.Milind C. Mahajan, Stephen Hartman, Mark Gerstein, Michael Snyder, Sherman M. Weissman posted to 3ends h3k36me3 polyadenylation by clearbluespring on 2009-08-03 14:17:33 as along with 2 people inesdesantiago rschulz
	Transcription termination by nuclear RNA polymerases [My Copy] Genes & Development, Vol. 23, No. 11. (1 June 2009), pp. 1247-1269. by Patricia Richard, James L. Manley posted to polyadenylation review termination transcription by clearbluespring on 2009-06-22 13:57:40 as
	Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing [My Copy] PLoS ONE, Vol. 4, No. 1. (23 January 2009), e4229. by Xiangqin Cui, Ann E. Loraine posted to affymetrix microarray mrna mrna-processing multiple-probe polyadenylation probe three-prime-expression-array by sebastien_vigneau on 2009-06-17 16:08:26 as along with 1 person ivanek
	Biased alternative polyadenylation in human tissues [My Copy] Genome Biology, Vol. 6, No. 12. (2005), R100. by Haibo Zhang, Ju Lee, Bin Tian posted to alt-polya brain est polyadenylation by rschulz on 2009-06-02 15:04:04 as along with 1 person heliopais
	Gene regulation by sense-antisense overlap of polyadenylation signals. [My Copy] RNA (New York, N.Y.) (23 April 2009) by Rui Gu, Zuo Zhang, Joshua N N. Decerbo, Gordon G G. Carmichael posted to polyadenylation by clearbluespring on 2009-05-01 17:50:27 as
	Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 17. (28 April 2009), pp. 7028-7033. by Zhe Ji, Ju Y. Lee, Zhenhua Pan, Bingjun Jiang, Bin Tian posted to development microrna myogenesis polyadenylation transcription by ericsuh on 2009-04-19 21:25:09 as along with 1 person and 1 group inesdesantiago BenosLab
	A human B cell methylome at 100âbase pair resolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 3. (20 January 2009), pp. 671-678. by Tibor A. Rauch, Xiwei Wu, Xueyan Zhong, Arthur D. Riggs, Gerd P. Pfeifer posted to b-cell dna-methylation epigenetics human methylome polyadenylation by rschulz on 2009-01-28 13:59:45 as along with 1 person and 1 group oelemento Epigenetics
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature In Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted to alternative human isoform polyadenylation regulation transcriptome by bertelsen on 2008-12-05 15:40:27 as along with 23 people and 1 group cajunsushi hzoltan ajbattle stubrown jonilaserson tonamswish frohike fenghezi heliopais zxmon21 tanglingfung xingxu felsani wimufi Zephyrus gjuggler eluinka gfliustu vplagnol kieran101 emptyhb rschulz abizar Roswell Cancer Crosstalk
	HITS-CLIP yields genome-wide insights into brain alternative RNA processing. [My Copy] Nature, Vol. 456, No. 7221. (27 November 2008), pp. 464-469. by Donny D. Licatalosi, Aldo Mele, John J. Fak, et al.Jernej Ule, Melis Kayikci, Sung Wook W. Chi, Tyson A. Clark, Anthony C. Schweitzer, John E. Blume, Xuning Wang, Jennifer C. Darnell, Robert B. Darnell posted to alt-polya brain chip-seq deep-seq polyadenylation protein rna by rschulz on 2008-11-27 16:20:46 as along with 6 people gbloeb darnelr asg kieran101 gfliustu dchughes
	Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines [My Copy] Nat Genet, Vol. 40, No. 12. (2 December 2008), pp. 1416-1425. by John C. Castle, Chaolin Zhang, Jyoti K. Shah, et al.Amit V. Kulkarni, Auinash Kalsotra, Thomas A. Cooper, Jason M. Johnson posted to alt-polya microarray motif polyadenylation rna splicing by rschulz on 2008-11-10 09:46:46 as along with 8 people ericrpaquet fenghezi tanglingfung xingxu asg pengchy djkt dchughes
	Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation [My Copy] Mol Biol Evol, Vol. 26, No. 2. (1 February 2009), pp. 327-334. by Chongjian Chen, Takeshi Ara, Daniel Gautheret posted to alt-polya alu intron polyadenylation repeat by rschulz on 2008-11-10 09:42:08 as along with 3 people operon andreasapostolides dchughes
	Species-specific cis-Regulatory Elements in the 3'-Untranslated Region Direct Alternative Polyadenylation of Bone Morphogenetic Protein 2 mRNA [My Copy] J. Biol. Chem., Vol. 283, No. 42. (17 October 2008), pp. 28010-28019. by Donglin Liu, David T. Fritz, Melissa B. Rogers, Aaron J. Shatkin posted to 3utr alternative polyadenylation by Alexander_Kanitz on 2008-10-13 09:50:20 as along with 1 person heliopais
	Patterns of variant polyadenylation signal usage in human genes. [My Copy] Genome Res, Vol. 10, No. 7. (July 2000), pp. 1001-1010. by E. Beaudoing, S. Freier, J. R. Wyatt, J. M. Claverie, D. Gautheret posted to human pas polyadenylation by Alexander_Kanitz on 2008-09-30 14:32:02 as along with 4 people Cortel bertelsen yoanjacquemin kcrawlik
	Alternative Polyadenylation: A Twist on mRNA 3' End Formation. [My Copy] ACS chemical biology (26 September 2008) by Carol S. Lutz posted to polyadenylation review by rschulz on 2008-09-30 08:40:07 as along with 2 people heliopais inesdesantiago
	Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes [My Copy] Nucl. Acids Res., Vol. 36, No. 17. (30 August 2008), pp. gkn540-5590. by Ju Y. Lee, Zhe Ji, Bin Tian posted to alternative evolution polyadenylation retrotransposition retrotransposon by rschulz on 2008-09-03 16:16:02 as along with 2 people operon inesdesantiago
	Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes. [My Copy] BMC Genomics, Vol. 8 (23 July 2007), 244. by Christian Weile, Paul P. Gardner, Mads M. Hedegaard, Jeppe Vinther posted to non-protein-coding identification microarray polyadenylation prediction rna structure tiling by bertelsen on 2008-08-14 18:02:23 as along with 1 person myrtilus
	Compilation of mRNA Polyadenylation Signals in Arabidopsis Revealed a New Signal Element and Potential Secondary Structures [My Copy] Plant Physiol., Vol. 138, No. 3. (1 July 2005), pp. 1457-1468. by Johnny C. Loke, Eric A. Stahlberg, David G. Strenski, Brian J. Haas, Paul C. Wood, Qingshun Q. Li posted to maturation mrna polyadenylation processing by agustinarce on 2008-07-28 19:40:31 as
	Connections between mRNA 3' end processing and transcription termination. [My Copy] Current opinion in cell biology, Vol. 17, No. 3. (June 2005), pp. 257-261. by S. Buratowski posted to polyadenylation review termination transcription by rschulz on 2008-06-26 09:49:44 as
	Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts. [My Copy] Molecular cell, Vol. 21, No. 2. (20 January 2006), pp. 239-248. by L. Vasiljeva, S. Buratowski posted to exosome nrd1 polyadenylation transcription by rschulz on 2008-06-26 09:45:04 as
	Polyadenylation site choice in yeast is affected by competition between Npl3 and polyadenylation factor CFI. [My Copy] RNA (New York, N.Y.), Vol. 13, No. 10. (October 2007), pp. 1756-1764. by M. E. Bucheli, X. He, C. D. Kaplan, C. L. Moore, S. Buratowski posted to cfi npl3 polyadenylation transcription yeast by rschulz on 2008-06-26 09:38:10 as
	The Rpb4 subunit of RNA polymerase II contributes to cotranscriptional recruitment of 3' processing factors. [My Copy] Molecular and cellular biology, Vol. 28, No. 6. (March 2008), pp. 1883-1891. by V. M. Runner, V. Podolny, S. Buratowski posted to polyadenylation polymerase rpb4 transcription by rschulz on 2008-06-26 09:35:30 as
	On the Reliable Identification of Plant Sequences Containing a Polyadenylation Site [My Copy] Journal of Computational Biology, Vol. 14, No. 9. (2007), pp. 1229-1245. by Ilkka Havukkala, Stijn Vanderlooy posted to plants polyadenylation by eskay on 2008-05-26 14:05:45 as
	Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs [My Copy] RNA, Vol. 10, No. 12. (December 2004), pp. 1957-1966. by Xuezhong Cai, Curt H. Hagedorn, Bryan R. Cullen posted to humans mirna mrna polyadenylation transcripts by bertelsen on 2008-04-25 00:24:33 as along with 5 people and 3 groups daforerog heliopais dchughes mtagaya matstuff microRNA G4ID Genetics-of-Gambling
	Translational control by the 3'-UTR: the ends specify the means. [My Copy] Trends in biochemical sciences, Vol. 28, No. 2. (February 2003), pp. 91-98. by B. Mazumder, V. Seshadri, P. L. Fox posted to 3-utr control polyadenylation translation utr by bertelsen on 2008-04-21 21:42:19 as
	AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by V. Le Texier, J. J. Riethoven, V. Kumanduri, et al.C. Gopalakrishnan, F. Lopez, D. Gautheret, T. A. Thanaraj posted to alternative pattern polyadenylation splicing transcript variants by bertelsen on 2008-04-20 23:34:03 as
	Regulating Gene Expression through RNA Nuclear Retention [My Copy] Cell, Vol. 123, No. 2. (21 October 2005), pp. 249-263. by Kannanganattu V. Prasanth, Supriya G. Prasanth, Zhenyu Xuan, et al.Stephen Hearn, Susan M. Freier, C. Frank Bennett, Michael Q. Zhang, David L. Spector posted to expression gene-regulation nuclear polyadenylation retention rna by bertelsen on 2008-04-18 22:05:36 as along with 4 people haarcuba operon rklancer Jporci
	PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by J. Y. Lee, I. Yeh, J. Y. Park, B. Tian posted to database mammal polyadenylation by rschulz on 2008-04-10 10:41:11 as
	Molecular dissection of mammalian RNA polymerase II transcriptional termination. [My Copy] Mol Cell, Vol. 29, No. 5. (14 March 2008), pp. 600-610. by S. West, N. J. Proudfoot, M. J. Dye posted to mechanism polyadenylation termination transcription by rschulz on 2008-03-22 14:06:29 as along with 1 person lesander
	RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes [My Copy] Nature Structural & Molecular Biology, Vol. 15, No. 1. (23 December 2007), pp. 71-78. by Kira Glover-Cutter, Soojin Kim, Joaquin Espinosa, David L. Bentley posted to initiation mechanism polyadenylation transcription by rschulz on 2008-03-12 16:40:59 as
	Polyadenylation in mammalian mitochondria: Insights from recent studies. [My Copy] Biochim Biophys Acta (14 February 2008) by Takashi Nagaike, Tsutomu Suzuki, Takuya Ueda posted to mammalian mitochondria polyadenylation by bertelsen on 2008-03-11 23:53:17 as
	Cytoplasmic mRNA polyadenylation and translation assays. [My Copy] Methods Mol Biol, Vol. 322 (2006), pp. 183-198. by M. Piqué, J. M. López, R. Méndez posted to assay polyadenylation by bertelsen on 2008-03-11 23:52:15 as
	Polyadenylation: a tail of two complexes. [My Copy] Curr Biol, Vol. 12, No. 24. (23 December 2002) by N. Proudfoot, J. O'Sullivan posted to 3 polyadenylation polymerase by bertelsen on 2008-03-11 23:50:49 as
	Polyadenylation of mRNA in prokaryotes. [My Copy] Annu Rev Biochem, Vol. 66 (1997), pp. 173-197. by N. Sarkar posted to polyadenylation prokaryotes by bertelsen on 2008-03-11 23:49:15 as
	Non-polyadenylated RNA polymerase II termination is induced by transcript cleavage. [My Copy] J Biol Chem (5 March 2008) by Sadeq Nabavi, Ross N N. Nazar posted to cleavage polyadenylation termination by bertelsen on 2008-03-11 23:43:49 as
	Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data. [My Copy] Genome Res, Vol. 11, No. 9. (September 2001), pp. 1520-1526. by E. Beaudoing, D. Gautheret posted to alternate identification polyadenylation sites by bertelsen on 2008-03-11 21:57:12 as along with 1 person Cortel
	Eukaryotic mRNA 3' processing: a common means to different ends [My Copy] Genes Dev., Vol. 19, No. 21. (1 November 2005), pp. 2517-2521. by Gregory M. Gilmartin posted to control polyadenylation post-transcriptional by bertelsen on 2008-03-11 21:44:28 as
	A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains [My Copy] BMC Genomics, Vol. 8 (01 February 2007), 39. by John N. Hutchinson, Alexander W. Ensminger, Christine M. Clemson, Christopher R. Lynch, Jeanne B. Lawrence, Andrew Chess posted to non-protein-coding affymetrix microarray polyadenylation rna by bertelsen on 2008-03-09 20:00:34 as
	Origin of phenotypes: genes and transcripts. [My Copy] Genome research, Vol. 17, No. 6. (June 2007), pp. 682-690. by T. R. Gingeras posted to cds gene phenotype polyadenylation review transcripts by bertelsen on 2008-03-09 17:02:29 as along with 10 people and 4 groups inesdesantiago klo guhjy balicea xico dchughes michC ghattem Garamonfok Jporci Bioinformatics WetBiology G4ID Genetics-of-Gambling
	Mechanism and regulation of mRNA polyadenylation [My Copy] Genes Dev., Vol. 11, No. 21. (1 November 1997), pp. 2755-2766. by Diana F. Colgan, James L. Manley posted to polyadenylation review by bertelsen on 2008-01-21 13:18:05 as along with 1 person kcrawlik
	Regulatory mechanisms for 3'-end alternative splicing and polyadenylation of the Glial Fibrillary Acidic Protein, GFAP, transcript. [My Copy] Nucleic Acids Res, Vol. 35, No. 22. (2007), pp. 7636-7650. by J. Blechingberg, S. Lykke-Andersen, T. H. Jensen, A. L. Jørgensen, A. L. Nielsen posted to alternative cytoskeleton gfap glia neuron polyadenylation rat srp20 stimulation by rschulz on 2008-01-21 09:18:20 as
	Loss of polyadenylation protein tauCstF-64 causes spermatogenic defects and male infertility [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 51. (18 December 2007), pp. 20374-20379. by Brinda Dass, Steve Tardif, Ji Y. Park, et al.Bin Tian, Harry M. Weitlauf, Rex A. Hess, Kay Carnes, Michael D. Griswold, Christopher L. Small, Clinton C. Macdonald posted to cstf-64 polyadenylation spermatogenesis by clintmacd on 2007-12-25 13:11:26 as
	Secondary structure as a functional feature in the downstream region of mammalian polyadenylation signals. [My Copy] Mol Cell Biol, Vol. 24, No. 7. (April 2004), pp. 2789-2796. by C. Wu, J. C. Alwine posted to mrna polyadenylation structure by bertelsen on 2007-09-04 23:58:56 as along with 1 person miguel
	Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation. [My Copy] RNA (30 August 2005) by Jun Hu, Carol S S. Lutz, Jeffrey Wilusz, Bin Tian posted to 3-utr human mrna polyadenylation regulation rna by bertelsen on 2007-09-04 23:43:06 as along with 4 people and 2 groups miguel Cortel jmrivort kcrawlik G-quadruplex Supramolecular
	Alternative poly(A) site selection in complex transcription units: means to an end? [My Copy] Nucleic Acids Res, Vol. 25, No. 13. (1 July 1997), pp. 2547-2561. by G. Edwalds-Gilbert, K. L. Veraldi, C. Milcarek posted to polyadenylation by bertelsen on 2007-09-04 23:28:35 as along with 2 people miguel Cortel

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review	5
splicing	5
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microarray	4
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mirna	3
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complexity	2
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dna-methylation	2
epigenetics	2
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global_insights	2
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insights_into_mechanisms	2
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humans	1
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maturation	1
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