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Tag population-structure [40 articles]

Recent papers classified by the tag population-structure.
  • Deep genetic divergences in Aoraki denticulata (Arachnida, Opiliones, Cyphophthalmi): a widespread mite harvestman defies DNA taxonomy
    Molecular Ecology, Vol. 16, No. 23. (December 2007), pp. 4999-5016.
    by Sarah L Boyer, Jessica M Baker, Gonzalo Giribet
    posted to barcoding population-structure by ryanraaum on 2007-11-26 13:05:20 as **
  • notes Clines, Clusters, and the Effect of Study Design on the Inference of Human Population Structure.
    PLoS Genet, Vol. 1, No. 6. (9 December 2005)
    by Noah AA Rosenberg, Saurabh Mahajan, Sohini Ramachandran, Chengfeng Zhao, Jonathan KK Pritchard, Marcus WW Feldman
    posted to cline cluster geographic-structure human-origins population-structure race by ryanraaum on 2007-06-29 16:30:36 as ** along with 3 people ccots larios pcarbo
  • Human population structure detection via multilocus genotype clustering
    BMC Genetics, Vol. 8 (25 June 2007), 34.
    by Xiaoyi Gao, Joshua Starmer
    posted to clustering hapmap methods population-structure snp statistics structure by ryanraaum on 2007-08-10 15:05:26 as **
  • Large-Scale SNP Genotyping with Canine Buccal Swab DNA
    J Hered, Vol. 98, No. 5. (1 July 2007), pp. 428-437.
    by Melanie L Chang, Rebecca L Terrill, Maria M Bautista, Elaine J Carlson, Donna J Dyer, Karen L Overall, Steven P Hamilton
    posted to breeds buccal-swab dogs ld population-structure snp by ryanraaum on 2007-08-30 14:07:13 as **
  • CYP2D6 allele frequency in European Caucasians, Asians, Africans and their descendants.
    Pharmacogenomics, Vol. 3, No. 2. (March 2002), pp. 229-243.
    by LD Bradford
    posted to pharmacogenomics population-structure race to-get by ryanraaum on 2007-09-10 16:46:05 as **
  • Genetic relationships between parishes in the Ebro delta region (Spain) as estimated by migration matrix and surnames.
    Hum Biol, Vol. 78, No. 6. (December 2006), pp. 647-662.
    by M Esparza, C García-Moro, M Hernández
    posted to population-structure surname by ryanraaum on 2007-07-12 14:04:45 as **
  • The distribution of major histocompatibility complex class I polymorphic Alu insertions and their associations with HLA alleles in a Chinese population from Malaysia
    Tissue Antigens, Vol. 70, No. 2. (August 2007), pp. 136-143.
    by DS Dunn, MK Choy, ME Phipps, JK Kulski
    posted to alu haplotype-methods hla mhc population-structure by ryanraaum on 2007-08-26 22:20:12 as **
  • 'Racial' differences in genetic effects for complex diseases
    Nature Genetics, Vol. 36, No. 12. (14 November 2004), 1312.
    by John PA Ioannidis, Evangelia E Ntzani, Thomas A Trikalinos
    posted to association common-disease-common-variant complex-disease population-structure race by ryanraaum on 2007-09-04 20:24:24 as **
  • Integrative use of spatial, genetic, and demographic analyses for investigating genetic connectivity between migratory, montane, and sedentary caribou herds
    Molecular Ecology, Vol. 16, No. 20. (2007), pp. 4223-4240.
    by Marylene Boulet, Serge Couturier, Steeve D Cote, Robert D Otto, Louis Bernatchez
    posted to gene-flow geographically-explicit migration population-history population-structure to-review by ryanraaum on 2007-10-02 13:39:25 as **
  • In search of polymorphic Alu insertions with restricted geographic distributions
    Genomics, Vol. 90, No. 1. (July 2007), pp. 154-158.
    by Richard Cordaux, Deepa Srikanta, Jungnam Lee, Mark Stoneking, Mark A Batzer
    posted to aim alu geographic-structure human-origins population-structure race by ryanraaum on 2007-07-01 19:45:03 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Testing hypotheses of language replacement in the Caucasus: evidence from the Y-chromosome.
    Hum Genet, Vol. 112, No. 3. (March 2003), pp. 255-261.
    by I Nasidze, T Sarkisian, A Kerimov, M Stoneking
    posted to caucausas haplogroup-g population-origins population-structure y-chromosome y-snp by ryanraaum on 2007-07-20 20:32:40 as ** along with 1 person Archaeogenetics
  • Patterns of genetic variation in populations of infectious agents
    BMC Evolutionary Biology, Vol. 7 (13 July 2007), 116.
    by Isabel Gordo, Paulo RA Campos
    posted to infectious-agents population-genetics population-structure to-review by ryanraaum on 2007-09-19 17:21:39 as **
  • BEYOND RACE: TOWARDS A WHOLE-GENOME PERSPECTIVE ON HUMAN POPULATIONS AND GENETIC VARIATION
    Nat Rev Genet, Vol. 5, No. 10. (October 2004), pp. 790-796.
    by Morris W Foster, Richard R Sharp
    posted to population-genomics population-structure race review snp by ryanraaum on 2007-08-09 21:12:33 as ** along with 1 person elsiatcase
  • A genomewide single-nucleotide-polymorphism panel for Mexican American admixture mapping.
    Am J Hum Genet, Vol. 80, No. 6. (June 2007), pp. 1014-1023.
    by C Tian, DA Hinds, R Shigeta, SG Adler, A Lee, MV Pahl, G Silva, JW Belmont, RL Hanson, WC Knowler, PK Gregersen, DG Ballinger, MF Seldin
    posted to admixture aim association disease mapping population-structure race snp to-get by ryanraaum on 2007-06-29 14:03:46 as **
  • An apportionment of human DNA diversity
    Proceedings of the National Academy of Sciences, Vol. 94, No. 9. (29 April 1997), pp. 4516-4519.
    by Guido Barbujani, Arianna Magagni, Eric Minch, Luca L Cavalli-Sforza
    posted to population-structure by ryanraaum on 2007-09-06 20:50:54 as **
  • Demic expansions and human evolution
    Science, Vol. 259, No. 5095. (29 January 1993), pp. 639-646.
    by Ll Cavalli-Sforza, P Menozzi, A Piazza
    posted to population-structure by ryanraaum on 2007-09-06 20:51:53 as **
  • Genetic profile of two Tibetan populations from China by analysis of 15 STR loci.
    Hum Biol, Vol. 78, No. 6. (December 2006), pp. 757-770.
    by B Ying, T Liu, G Chen, Z Zhao, H Fan, F Wen
    posted to asia china population-structure str tibet by ryanraaum on 2007-07-12 14:02:36 as **
  • The study of structured populations--new hope for a difficult and divided science.
    Nat Rev Genet, Vol. 4, No. 7. (July 2003), pp. 535-543.
    by J Hey, CA Machado
    posted to pop-gen population-structure review by ryanraaum on 2007-08-07 15:18:47 as **
  • Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation.
    Hum Genomics, Vol. 2, No. 2. (2005), pp. 81-89.
    by Mark D Shriver, Rui Mei, Esteban J Parra, Vibhor Sonpar, Indrani Halder, Sarah A Tishkoff, Theodore G Schurr, Sergev I Zhadanov, Ludmila P Osipova, Tom D Brutsaert, Jonathan Friedlaender, Lynn B Jorde, WS Watkins, Michael J Bamshad, Gerardo Gutierrez, Halina Loi, Hajime Matsuzaki, Rick A Kittles, George Argyropoulos, Jose R Fernandez, Joshua M Akey, Keith W Jones
    posted to association population-structure sampling snp wga by ryanraaum on 2007-08-09 20:59:30 as ** along with 1 person and 1 group cgreal CGREL
  • A Markov Chain Monte Carlo Approach for Joint Inference of Population Structure and Inbreeding Rates From Multilocus Genotype Data
    Genetics, Vol. 176, No. 3. (1 July 2007), pp. 1635-1651.
    by Hong Gao, Scott Williamson, Carlos D Bustamante
    posted to bayesian bio-tools inbreeding mcmc methods multilocus population-structure selfing simulation structure by ryanraaum on 2007-07-20 13:23:34 as ** along with 2 people lp2 roys
  • Global patterns of human mitochondrial DNA and Y-chromosome structure are not influenced by higher migration rates of females versus males
    Nat Genet, Vol. 36, No. 10. (October 2004), pp. 1122-1125.
    by Jason A Wilder, Sarah B Kingan, Zahra Mobasher, Maya M Pilkington, Michael F Hammer
    posted to ascertainment-bias gene-flow migration mtdna population-structure y-chromosome by ryanraaum on 2007-07-24 18:54:33 as **
  • CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    Bioinformatics, Vol. 23, No. 14. (1 July 2007), pp. 1801-1806.
    by Mattias Jakobsson, Noah A Rosenberg
    posted to bio-tools population-structure structure by ryanraaum on 2007-08-08 15:42:28 as **
  • Hardy Weinberg Expectations in Canine Breeds: Implications for Genetic Studies
    J Hered, Vol. 98, No. 5. (1 July 2007), pp. 445-451.
    by Andrea D Short, Lorna J Kennedy, Annette Barnes, Neale Fretwell, Chris Jones, Wendy Thomson, William E Ollier
    posted to breeds dogs hardy-weinberg hwe population-structure by ryanraaum on 2007-08-30 14:08:24 as ** along with 1 person manduca
  • Using Multilocus Sequence Data to Assess Population Structure, Natural Selection, and Linkage Disequilibrium in Wild Tomatoes
    Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2310-2322.
    by Uraiwan Arunyawat, Wolfgang Stephan, Thomas Stadler
    posted to fst multilocus population-genetics population-structure tajima-d by ryanraaum on 2007-10-09 13:22:59 as ** along with 3 people and 1 group jri ArtemPankin candypmcg Khavkin's lab
  • Geography is a better determinant of human genetic differentiation than ethnicity
    Human Genetics, Vol. 118, No. 3. (18 December 2005), pp. 366-371.
    by Andrea Manica, Franck Prugnolle, François Balloux
    posted to geographic-structure population-structure race str by ryanraaum on 2007-08-10 21:34:53 as **
  • Recombination shapes the natural population structure of the hyperthermophilic archaeon Sulfolobus islandicus.
    Mol Biol Evol, Vol. 22, No. 12. (December 2005), pp. 2354-2361.
    by RJ Whitaker, DW Grogan, JW Taylor
    posted to hgt-archaea horizontal-gene-transfer microbial-populations population-genetics population-structure recombination sulfolobus x-recomb-evidence x-recomb-frequency z-paper-fer1-fer2-species by jmeppley on 2006-05-12 20:14:50 as read
  • Topological structure and interaction strengths in model food webs
    (7 February 2004)
    by Christopher Quince, Paul Higgs, Alan Mckane
    posted to community-structure ecology food-web model population-structure simulation trophic-level x-community-structure by jmeppley on 2005-10-18 19:36:43 as *** along with 2 people and 3 groups camster korakot Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
  • Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data
    Biology Direct, Vol. 2 (07 November 2007), 27.
    by Larry J Wilhelm, James H Tripp, Scott A Givan, Daniel P Smith, Stephen J Giovannoni
    posted to community-genomics comparative-metagenomics population-genetics population-structure sar11 by jmeppley on 2008-04-09 13:41:12 as ** along with 1 person and 2 groups jlgreen Green Lab iSEEM
  • Gene Flow and the Geographic Structure of Natural Populations
    by Montgomery Slatkin
    posted to gene-flow gene-frequency genetics population-structure by jmeppley on 2005-10-04 21:31:39 as **
  • notes The genome sequence of the malaria mosquito Anopheles gambiae.
    Science, Vol. 298, No. 5591. (4 October 2002), pp. 129-149.
    by RA Holt, GM Subramanian, A Halpern, GG Sutton, R Charlab, DR Nusskern, P Wincker, AG Clark, JM Ribeiro, R Wides, SL Salzberg, B Loftus, M Yandell, WH Majoros, DB Rusch, Z Lai, CL Kraft, JF Abril, V Anthouard, P Arensburger, PW Atkinson, H Baden, V de Berardinis, D Baldwin, V Benes, J Biedler, C Blass, R Bolanos, D Boscus, M Barnstead, S Cai, A Center, K Chaturverdi, GK Christophides, MA Chrystal, M Clamp, A Cravchik, V Curwen, A Dana, A Delcher, I Dew, CA Evans, M Flanigan, A Grundschober-Freimoser, L Friedli, Z Gu, P Guan, R Guigo, ME Hillenmeyer, SL Hladun, JR Hogan, YS Hong, J Hoover, O Jaillon, Z Ke, C Kodira, E Kokoza, A Koutsos, I Letunic, A Levitsky, Y Liang, JJ Lin, NF Lobo, JR Lopez, JA Malek, TC McIntosh, S Meister, J Miller, C Mobarry, E Mongin, SD Murphy, DA O'Brochta, C Pfannkoch, R Qi, MA Regier, K Remington, H Shao, MV Sharakhova, CD Sitter, J Shetty, TJ Smith, R Strong, J Sun, D Thomasova, LQ Ton, P Topalis, Z Tu, MF Unger, B Walenz, A Wang, J Wang, M Wang, X Wang, KJ Woodford, JR Wortman, M Wu, A Yao, EM Zdobnov, H Zhang, Q Zhao, S Zhao, SC Zhu, I Zhimulev, M Coluzzi, A della Torre, CW Roth, C Louis, F Kalush, RJ Mural, EW Myers, MD Adams, HO Smith, S Broder, MJ Gardner, CM Fraser, E Birney, P Bork, PT Brey, JC Venter, J Weissenbach, FC Kafatos, FH Collins, SL Hoffman
    posted to diversity population-structure sequencing single-nucleotide-polymorphisms variability x-genomics by jmeppley on 2005-10-23 04:58:39 as ** along with 7 people and 4 groups sdinka jwortman marcius meister1975 stajich niallhaslam Neeperando BioinfoCIPF SGU-CIPF Berkeley Mycology Notre Dame Bioinformatics
  • Genomic plasticity in prokaryotes: the case of the square haloarchaeon.
    ISME J, Vol. 1, No. 3. (July 2007), pp. 235-245.
    by S Cuadros-Orellana, AB Martin-Cuadrado, B Legault, G D'Auria, O Zhaxybayeva, RT Papke, F Rodriguez-Valera
    posted to community-geonomics comparative-metagenomics genomic-islands population-structure by jmeppley on 2008-04-09 13:33:48 as ** along with 3 people operon balicea hpaces
  • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing.
    J. Bacteriol., Vol. 173, No. 14. (1 July 1991), pp. 4371-4378.
    by TM Schmidt, EF Delong, NR Pace
    posted to 16s-rrna community-genomics microbial-ecology population-structure by jmeppley on 2007-05-01 18:00:40 as read
  • Ancestral Inference in Population Genetics
    Statistical Science, Vol. 9, No. 3. (1994), pp. 307-319.
    by RC Griffiths, Simon Tavare
    posted to evolution genetics monte-carlo-estimation phylogenetics population-genetics population-structure by jmeppley on 2005-10-04 21:56:30 as **
  • Fine-scale phylogenetic architecture of a complex bacterial community.
    Nature, Vol. 430, No. 6999. (29 July 2004), pp. 551-554.
    by SG Acinas, V Klepac-Ceraj, DE Hunt, C Pharino, I Ceraj, DL Distel, MF Polz
    posted to community-genomics microbial-diversity microbial-ecology phylogenetics population-structure by jmeppley on 2006-08-30 18:32:27 as ** along with 4 people bluto Thaverkamp kerekesj mcox
  • Likelihood Analysis of Ongoing Gene Flow and Historical Association
    Evolution, Vol. 54, No. 1. (2000), pp. 44-50.
    by Rasmus Nielsen, Montgomery Slatkin
    posted to gene-flow genetics maximum-likelihood population-divergence population-structure single-nucleotide-polymorphisms by jmeppley on 2005-10-04 21:46:15 as **
  • Recombination and the population structures of bacterial pathogens.
    Annu Rev Microbiol, Vol. 55 (2001), pp. 561-590.
    by EJ Feil, BG Spratt
    posted to microbial-populations population-genetics population-structure recombination by jmeppley on 2008-04-17 21:21:20 as ** along with 2 people AaronDarling CharlesM
  • Diversity and population structure of a near-shore marine-sediment viral community.
    Proc Biol Sci, Vol. 271, No. 1539. (22 March 2004), pp. 565-574.
    by M Breitbart, B Felts, S Kelley, JM Mahaffy, J Nulton, P Salamon, F Rohwer
    posted to community-genomics diversity population-structure x-fer2-strains by jmeppley on 2005-10-31 16:08:10 as **
  • DIFFERENTIATION AMONG POPULATIONS WITH MIGRATION, MUTATION, AND DRIFT: IMPLICATIONS FOR GENETIC INFERENCE
    Evolution, Vol. 60, No. 1. (2006), pp. 1-12.
    by Seongho Song, Dipak K Dey, Kent E Holsinger
    posted to population-structure mutation migration genetic-drift f-statistics by jbyoder on 2008-09-22 23:27:14 as ****
  • Contrasting quaternary histories in an ecologically divergent sister pair of low-dispersing intertidal fish (Xiphister) revealed by multilocus DNA analysis.
    Evolution Int J Org Evolution, Vol. 59, No. 2. (February 2005), pp. 344-360.
    by MJ Hickerson, CW Cunningham
    posted to fish population-structure by cmm to the group FAB-lab on 2006-03-26 04:26:53 as read
  • ‘What's larvae got to do with it?’ Disparate patterns of post-glacial population structure in two benthic marine gastropods with identical dispersal potential
    Molecular Ecology, Vol. 13 (2004), pp. 597-611.
    by PB Marko
    posted to gastropod population-structure by cmm to the group FAB-lab on 2006-03-26 04:23:44 as read
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