Tag ppi [more than 800 articles] Export

Recent papers classified by the tag ppi.

	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted to prediction ppi by aceol on 2009-11-23 16:04:28 as along with 25 people colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	STRING: a database of predicted functional associations between proteins. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 258-261. by Christian von Mering, Martijn Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel posted to prediction ppi database by aceol on 2009-11-23 16:01:29 as along with 4 people and 2 groups kuhn lfriedl eweaver nickluscombe kdl EBI-regulation
	Comparative assessment of large-scale data sets of protein-protein interactions. [My Copy] Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403. by Christian von Mering, Roland Krause, Berend Snel, et al.Michael Cornell, Stephen G. Oliver, Stanley Fields, Peer Bork posted to validation ppi by aceol on 2009-11-23 15:58:50 as along with 25 people and 6 groups nzm lawraga semin camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu Evangelia shikin Pao-Yang carlk cerca ethkim dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, JosÃ© M. PeregrÃn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted to ppi experimental by aceol on 2009-11-23 15:57:29 as along with 30 people and 5 groups mpotamias paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim Paccanaro Lab kdl EBI-regulation BioinfoCIPF SGU-CIPF
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to ppi by aceol on 2009-11-23 15:56:59 as along with 31 people and 10 groups tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	Literature-curated protein interaction datasets [My Copy] Nature Methods, Vol. 6, No. 1. (30 December 2008), pp. 39-46. by Michael E. Cusick, Haiyuan Yu, Alex Smolyar, et al.Kavitha Venkatesan, Anne-Ruxandra Carvunis, Nicolas Simonis, Jean-François Rual, Heather Borick, Pascal Braun, Matija Dreze, Jean Vandenhaute, Mary Galli, Junshi Yazaki, David E. Hill, Joseph R. Ecker, Frederick P. Roth, Marc Vidal posted to ppi database by aceol on 2009-11-23 15:56:42 as along with 16 people fgibson allysonlister carlk aramesh2 ocs reyez kshameer neils daforerog lesikv sjcockell dullhunk icq242500260 guhjy zwang hmk
	Functional organization of the yeast proteome by systematic analysis of protein complexes [My Copy] Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147. by Anne-Claude Gavin, Markus Bosche, Roland Krause, et al.Paola Grandi, Martina Marzioch, Andreas Bauer, Jorg Schultz, Jens M. Rick, Anne-Marie Michon, Cristina-Maria Cruciat, Marita Remor, Christian Hofert, Malgorzata Schelder, Miro Brajenovic, Heinz Ruffner, Alejandro Merino, Karin Klein, Manuela Hudak, David Dickson, Tatjana Rudi, Volker Gnau, Angela Bauch, Sonja Bastuck, Bettina Huhse, Christina Leutwein, Marie-Anne Heurtier, Richard R. Copley, Angela Edelmann, Erich Querfurth, Vladimir Rybin, Gerard Drewes, Manfred Raida, Tewis Bouwmeester, Peer Bork, Bertrand Seraphin, Bernhard Kuster, Gitte Neubauer, Giulio Superti-Furga posted to ppi by aceol on 2009-11-23 15:56:24 as along with 24 people and 2 groups carlk chica lawraga semin cerca taenneken adiel baaden dragonrez shivaram helenc lfriedl chad_davis balajis opheliav wnpx becarmson raiyar grahamc nicoleq iris_2001 csanford frohike ethkim kdl steinmetzlab
	High-Quality Binary Protein Interaction Map of the Yeast Interactome Network [My Copy] Science, Vol. 322, No. 5898. (3 October 2008), pp. 104-110. by Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, et al.Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E. Hill, Marc Vidal posted to ppi by aceol on 2009-11-23 15:55:45 as along with 27 people and 1 group mgomes nzm pauldobson cabbagezs mariap3636 semin roys phoenixzxl kintoki jbhiatt elenaz jfr ocs cerca ptrobajo carlk zwang gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy guhjy maralena neils BenosLab
	Enhancing the prediction of protein pairings between interacting families using orthology information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 35. by Jose Izarzugaza, David Juan, Carles Pons, Florencio Pazos, Alfonso Valencia posted to ppi coevolution by dfdong on 2009-11-23 08:47:32 as along with 3 people biomcgary chad_davis neils
	Graphical models of protein-protein interaction specificity from correlated mutations and interaction data [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2 February 2009), pp. 911-929. by John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg posted to ppi coevolution by dfdong on 2009-11-23 08:46:25 as along with 5 people and 2 groups sobolevnrm AliC qluo RebeccaHamer barry Orengo Group Journal Picks baker-group
	The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. [My Copy] Nature biotechnology, Vol. 22, No. 2. (February 2004), pp. 177-183. by Henning Hermjakob, Luisa Montecchi-Palazzi, Gary Bader, et al.Jérôme Wojcik, Lukasz Salwinski, Arnaud Ceol, Susan Moore, Sandra Orchard, Ugis Sarkans, Christian von Mering, Bernd Roechert, Sylvain Poux, Eva Jung, Henning Mersch, Paul Kersey, Michael Lappe, Yixue Li, Rong Zeng, Debashis Rana, Macha Nikolski, Holger Husi, Christine Brun, K. Shanker, Seth G. Grant, Chris Sander, Peer Bork, Weimin Zhu, Akhilesh Pandey, Alvis Brazma, Bernard Jacq, Marc Vidal, David Sherman, Pierre Legrain, Gianni Cesareni, Ioannis Xenarios, David Eisenberg, Boris Steipe, Chris Hogue, Rolf Apweiler posted to standard ppi by aceol on 2009-11-20 10:01:26 as along with 7 people and 1 group allysonlister irenas balajis grahamc jmuhlich lpfernandes lenov dbk-lab
	Comparative interactomics. [My Copy] FEBS letters In Systems Biology, Vol. 579, No. 8. (21 March 2005), pp. 1828-1833. by Gianni Cesareni, Arnaud Ceol, Caius Gavrila, Luisa Montecchi M. Palazzi, Maria Persico, Maria Victoria V. Schneider posted to prediction ppi homology database by aceol on 2009-11-20 10:01:05 as along with 2 people chica Evangelia
	HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms. [My Copy] BMC bioinformatics, Vol. 6 Suppl 4 (1 December 2005) by Maria Persico, Arnaud Ceol, Caius Gavrila, Robert Hoffmann, Arnaldo Florio, Gianni Cesareni posted to prediction ppi database by aceol on 2009-11-20 10:00:42 as along with 4 people Scis0000002 cerca maryee mariap3636
	DOMINO: a database of domain-peptide interactions. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by Arnaud Ceol, Andrew Chatr-aryamontri, Elena Santonico, Roberto Sacco, Luisa Castagnoli, Gianni Cesareni posted to ppi domains database by aceol on 2009-11-20 10:00:00 as along with 2 people guhjy Evangelia
	MINT: the Molecular INTeraction database. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (12 January 2007), pp. D572-574. by Andrew Chatr-aryamontri, Arnaud Ceol, Luisa Montecchi M. Palazzi, et al.Giuliano Nardelli, Maria Victoria V. Schneider, Luisa Castagnoli, Gianni Cesareni posted to ppi database by aceol on 2009-11-20 09:59:37 as along with 4 people jperkins swp09 guhjy cerca
	The minimum information required for reporting a molecular interaction experiment (MIMIx). [My Copy] Nature biotechnology, Vol. 25, No. 8. (08 August 2007), pp. 894-898. by Sandra Orchard, Lukasz Salwinski, Samuel Kerrien, et al.Luisa Montecchi-Palazzi, Matthias Oesterheld, Volker Stümpflen, Arnaud Ceol, Andrew Chatr-aryamontri, John Armstrong, Peter Woollard, John J. Salama, Susan Moore, Jérôme Wojcik, Gary D. Bader, Marc Vidal, Michael E. Cusick, Mark Gerstein, Anne-Claude C. Gavin, Giulio Superti-Furga, Jack Greenblatt, Joel Bader, Peter Uetz, Mike Tyers, Pierre Legrain, Stan Fields, Nicola Mulder, Michael Gilson, Michael Niepmann, Lyle Burgoon, Javier De Las Rivas, Carlos Prieto, Victoria M. Perreau, Chris Hogue, Hans-Werner W. Mewes, Rolf Apweiler, Ioannis Xenarios, David Eisenberg, Gianni Cesareni, Henning Hermjakob posted to standard ppi database by aceol on 2009-11-20 09:59:14 as along with 8 people aramesh2 guhjy hpiwowar yeastyboy grahamc jandot softsimu zwang
	Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition. [My Copy] Proteomics, Vol. 7 Suppl 1 (September 2007), pp. 28-34. by Sandra Orchard, Samuel Kerrien, Philip Jones, et al.Arnaud Ceol, Andrew Chatr-Aryamontri, Lukasz Salwinski, Jason Nerothin, Henning Hermjakob posted to standard ppi database by aceol on 2009-11-20 09:58:14 as along with 1 person bicko
	Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. [My Copy] BMC biology, Vol. 5 (09 October 2007), 44. by Samuel Kerrien, Sandra Orchard, Luisa Montecchi-Palazzi, et al.Bruno Aranda, Antony F. Quinn, Nisha Vinod, Gary D. Bader, Ioannis Xenarios, Jérôme Wojcik, David Sherman, Mike Tyers, John J. Salama, Susan Moore, Arnaud Ceol, Andrew Chatr-Aryamontri, Matthias Oesterheld, Volker Stümpflen, Lukasz Salwinski, Jason Nerothin, Ethan Cerami, Michael E. Cusick, Marc Vidal, Michael Gilson, John Armstrong, Peter Woollard, Christopher Hogue, David Eisenberg, Gianni Cesareni, Rolf Apweiler, Henning Hermjakob posted to standard ppi database by aceol on 2009-11-20 09:58:00 as
	Linking entries in protein interaction database to structured text: the FEBS Letters experiment. [My Copy] FEBS letters, Vol. 582, No. 8. (9 April 2008), pp. 1171-1177. by Arnaud Ceol, Andrew Chatr-Aryamontri, Luana Licata, Gianni Cesareni posted to validation ppi database by aceol on 2009-11-20 09:57:45 as along with 2 people vlachmore guhjy
	Protein interactions: integration leads to belief. [My Copy] Trends in biochemical sciences, Vol. 33, No. 6. (June 2008) by Andrew Chatr-Aryamontri, Arnaud Ceol, Luana Licata, Gianni Cesareni posted to validation ppi database by aceol on 2009-11-20 09:57:27 as
	Searching the MINT database for protein interaction information. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 8 (June 2008) by Gianni Cesareni, Andrew Chatr-aryamontri, Luana Licata, Arnaud Ceol posted to ppi database by aceol on 2009-11-20 09:57:05 as along with 1 person guhjy
	Searching the protein interaction space through the MINT database. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 484 (2008), pp. 305-317. by Andrew Chatr-Aryamontri, Andreas Zanzoni, Arnaud Ceol, Gianni Cesareni posted to ppi database by aceol on 2009-11-20 09:56:49 as along with 1 person guhjy
	MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data. [My Copy] Genome biology, Vol. 9 Suppl 2 (2008) by Andrew Chatr-aryamontri, Samuel Kerrien, Jyoti Khadake, et al.Sandra Orchard, Arnaud Ceol, Luana Licata, Luisa Castagnoli, Stefano Costa, Cathy Derow, Rachael Huntley, Bruno Aranda, Catherine Leroy, Dave Thorneycroft, Rolf Apweiler, Gianni Cesareni, Henning Hermjakob posted to ppi datamining database by aceol on 2009-11-20 09:55:53 as along with 1 person liblab
	VirusMINT: a viral protein interaction database. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (30 January 2009) by Andrew Chatr-aryamontri, Arnaud Ceol, Daniele Peluso, et al.Aurelio Nardozza, Simona Panni, Francesca Sacco, Michele Tinti, Alex Smolyar, Luisa Castagnoli, Marc Vidal, Michael E. Cusick, Gianni Cesareni posted to ppi database by aceol on 2009-11-20 09:48:51 as
	Hydrophile scanning as a complement to alanine scanning for exploring and manipulating protein-protein recognition: Application to the Bim BH3 domain [My Copy] Protein Sci (8 May 2008), ps.032896.107. by Melissa D. Boersma, Jack D. Sadowsky, York A. Tomita, Samuel H. Gellman posted to protein-protein protein ppi pauly boersma by wilbur on 2009-11-18 14:09:27 as along with 2 people emiko paulschlesinger
	Knitting and untying the protein network: modulation of protein ensembles as a therapeutic strategy. [My Copy] Protein science : a publication of the Protein Society, Vol. 18, No. 3. (March 2009), pp. 481-493. by S. Gordo, E. Giralt posted to protein_ensembles protein prebiotic_soup ppi needlework by wilbur on 2009-11-18 12:25:43 as along with 1 person guhjy
	MINT, the molecular interaction database: 2009 update [My Copy] Nucl. Acids Res. (6 November 2009), gkp983. by Arnaud Ceol, Andrew Chatr Aryamontri, Luana Licata, et al.Daniele Peluso, Leonardo Briganti, Livia Perfetto, Luisa Castagnoli, Gianni Cesareni posted to ppi by aceol on 2009-11-17 14:35:47 as along with 2 people brianb neils
	Towards the mammalian interactome: Inference of a core mammalian interaction set in mouse [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2009), NA. by Chang J. Shin, Melissa J. Davis, Mark A. Ragan posted to prediction ppi by aceol on 2009-11-17 14:34:14 as along with 1 person sjcockell
	An experimentally derived confidence score for binary protein-protein interactions [My Copy] Nat Meth, Vol. 6, No. 1. (07 December 2008), pp. 91-97. by Pascal Braun, Murat Tasan, Matija Dreze, et al.Miriam Barrios-Rodiles, Irma Lemmens, Haiyuan Yu, Julie M. Sahalie, Ryan R. Murray, Luba Roncari, Anne-Sophie de Smet, Kavitha Venkatesan, Jean-Francois Rual, Jean Vandenhaute, Michael E. Cusick, Tony Pawson, David E. Hill, Jan Tavernier, Jeffrey L. Wrana, Frederick P. Roth, Marc Vidal posted to validation ppi by aceol on 2009-11-17 11:42:52 as along with 7 people lawraga anf carlk ocs zwang guhjy sjcockell
	CORUM: the comprehensive resource of mammalian protein complexes--2009 [My Copy] Nucl. Acids Res. (1 November 2009), gkp914. by Andreas Ruepp, Brigitte Waegele, Martin Lechner, et al.Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Mewes posted to ppi complexes by aceol on 2009-11-17 11:12:54 as along with 1 group Journal picks
	Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Resaerch in computational molecular biology (2004), pp. 282-289. by Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp posted to readlater ppi networks complexes clustering by colmryan on 2009-11-13 14:58:34 as along with 6 people and 2 groups dakelley dragonrez okarsligil lfriedl wnpx iris_2001 kdl Bioinformatics
	Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases [My Copy] PLoS Comput Biol, Vol. 3, No. 3. (30 March 2007), e42. by Benjamin A. Shoemaker, Anna R. Panchenko posted to ppi networks by colmryan on 2009-11-13 14:47:45 as along with 12 people chica flbarroso kiekyon semin giovenko Yanno IbnBio zwang Evangelia carlk higueruelo ethkim
	Predicting genetic interactions with random walks on biological networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 17. by Kyle Chipman, Ambuj Singh posted to ppi networks genetic-interactions by colmryan on 2009-11-13 14:39:43 as along with 7 people ilyashl guhjy rdiaz dakelley barriot phoenixzxl colinDotAIBN
	Structure discovery in PPI networks using pattern-based network decomposition [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1814-1821. by Philip Bachman, Ying Liu posted to readlater ppi networks motifs by colm on 2009-11-13 14:05:22 as along with 5 people ess30 carlk apocapoc grahamc colmryan
	SnapShot: Convenient, Comprehensive, and Now Clickable [My Copy] Cell, Vol. 138, No. 5. (04 September 2009), pp. 1034-1034. by Nathan E. Bress, Robert P. Kruger, Andrew A. Tang posted to tgfb ppi by guhjy on 2009-11-13 10:41:07 as
	Interaction between Intrinsically Disordered Proteins Frequently Occurs in a Human Protein–Protein Interaction Network [My Copy] Journal of Molecular Biology, Vol. 392, No. 5. (09 October 2009), pp. 1253-1265. by Kana Shimizu, Hiroyuki Toh posted to structure protein ppi interaction go disorder 13-nov-09 by bdessailly to the group Orengo Group Journal Picks on 2009-11-13 10:14:04 as along with 8 people jjray nzm ekotelnikova kiekyon tprpip higueruelo cabbagesofdoom reyez
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted to protein_protein_interaction ppi gene_network function_prediction expression drosophila_melanogaster 13-nov-09 by bdessailly to the group Orengo Group Journal Picks on 2009-11-13 10:13:07 as along with 8 people and 1 group meanerelk abc623 Borelli carlk sotacam kiekyon druvus daveGerrard BergmanLab
	Evolution of Protein Binding Modes in Homooligomers [My Copy] Journal of Molecular Biology (30 October 2009) by J. Dayhoff posted to symmetry structural_analysis protein_interactions ppi phylogenetic_analysis interface_size interface_evolution interaction_evolution homooligomers binding_mode 13-nov-09 by bdessailly to the group Orengo Group Journal Picks on 2009-11-13 10:07:22 as
	G protein-coupled receptor cross-talk: pivotal roles of protein phosphorylation and protein?protein interactions [My Copy] Cellular Signalling, Vol. 15, No. 6. (June 2003), pp. 549-557. by J. Vazquezprado posted to ppi gpcr by guhjy on 2009-11-13 02:27:50 as
	Mammalian target of rapamycin complex 1-mediated phosphorylation of eukaryotic initiation factor 4E-binding protein 1 requires multiple protein-protein interactions for substrate recognition. [My Copy] Cellular signalling, Vol. 21, No. 7. (July 2009), pp. 1073-1084. by Elaine A. Dunlop, Kayleigh M. Dodd, Lyndsey A. Seymour, Andrew R. Tee posted to ppi mtorc1 mtor by guhjy on 2009-11-12 08:47:03 as
	Elucidation of functional consequences of signalling pathway interactions [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 370. by Adaoha Ihekwaba, Phuong Nguyen, Corrado Priami posted to readlater ppi networks by colmryan on 2009-11-09 10:17:51 as along with 4 people and 1 group sillitoe karthikraman calderonv renatomilani Orengo Group Journal Picks
	The human protein coevolution network. [My Copy] Genome research, Vol. 19, No. 10. (20 October 2009), pp. 1861-1871. by Elisabeth R. Tillier, Robert L. Charlebois posted to sequence_weighting ppi coevolution by dfdong on 2009-11-06 08:33:01 as along with 7 people Garamonfok venancio jperkins TRHvidsten djkt phoenixzxl tmmurali
	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232. by Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, Ruth Nussinov posted to review predict ppi complex analysis by dfdong on 2009-11-04 03:28:16 as along with 12 people and 3 groups jinghu_fandm daforerog qluo SaraNasser mikaellund reyez diamantis apaydin barry semin renatomilani svozil structural_bioinformatics McCammon Bioinformatics
	In silico two-hybrid system for the selection of physically interacting protein pairs [My Copy] Proteins: Structure, Function, and Genetics, Vol. 47, No. 2. (2002), pp. 219-227. by Florencio Pazos, Alfonso Valencia posted to predict ppi coevolution by dfdong on 2009-11-04 03:24:54 as along with 3 people qluo Robinder tale
	The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2404-2410. by Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy, David C. Hess, Olga G. Troyanskaya posted to protein ppi pfp humor after_eights 26 by wilbur on 2009-11-03 21:57:16 as along with 3 people tmmurali TRHvidsten phoenixzxl
	An assessment of the uses of homologous interactions [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 689-695. by Ramazan Saeed, Charlotte Deane posted to ppi homologue by snow_dragon on 2009-11-03 21:06:03 as along with 11 people carlk lawraga winterschlaefer chad_davis grahamc cjeans laughcry mingzhi cdeane Pao-Yang samesense
	A novel and efficient tool for locating and characterizing protein cavities and binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (11 September 2009), NA. by Ashutosh Tripathi, Glen E. Kellogg posted to shape ppi pocket interface 2009 by higueruelo on 2009-11-03 16:48:01 as along with 2 people nickolay ahmetbakan
	Identification of Lead Compounds As Antagonists of Protein Bcl-xL with a Diversity-Oriented Multidisciplinary Approach [My Copy] Journal of Medicinal Chemistry, Vol. 0, No. 0. (23 October 0000) by Simone Di Micco, Romina Vitale, Maurizio Pellecchia, et al.Michele F. Rega, Renata Riva, Andrea Basso, Giuseppe Bifulco posted to xf sm ppi dos bclxl 2009 by higueruelo on 2009-11-03 16:43:30 as along with 1 person jianfengcai
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to ppi interface hotspots 2009 by higueruelo on 2009-11-03 16:40:16 as along with 6 people and 1 group sillitoe apaydin kshameer zwang phoenixzxl neils Orengo Group Journal Picks
	N-Acylpolyamine inhibitors of HDM2 and HDMX binding to p53. [My Copy] Bioorganic & medicinal chemistry (21 October 2009) by Ryo Hayashi, Deyun Wang, Toshiaki Hara, Jaclyn A. Iera, Stewart R. Durell, Daniel H. Appella posted to xf sm ppi p53 2009 by higueruelo on 2009-11-03 16:38:41 as

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sm	221
xf	220
review	163
network	147
2008	102
bio	101
interface	100
2007	97
2009	83
networks	71
structure	66
protein	63
prediction	61
evolution	51
yeast	47
database	44
db	43
proj_assembly	42
2006	41
chapter	41
peptidomimetics	40
2005	38
intimbal	38
interaction	37
complex	36
complexes	36
bionlp	32
algorithm	30
textmining	30
docking	29
proj_interprets	28
binding	25
2004	24
p53	24
function	23
graph_based_analysis	22
hotspots	22
mdm2	21
method	21
bcl2	20
annotation	18
peptides	18
topology	18
bioinformatics	17
human	17
software	17
ctmc7	16
disorder	16
flexibility	16
interactome	16
pin	16
struct-determination	16
clustering	15
2002	14
domain	14
embl	14
graph	14
nmr	14
reliability	14
systems_biology	14
y2h	14
hiv1	13
sequence	13
2003	12
hubs	12
modelling	12
smac	12
data_integration	11
htp	11
ms	11
tpo	11
xiap	11
allosteric	10
bclxl	10
cancer	10
coevolution	10
high_throughput_dataset	10
motif	10
svm	10
usesmipsset	10
classic	9
data	9
disease	9
integration	9
model	9
motifs	9
ner	9
pathway	9
pocket	9
ppi_verification	9
proteomics	9
statistics	9
thermo	9
validation	9
candidate-gene	8
computational	8
ecoli	8
max	8
myc	8
service	8

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