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	Contact prediction in protein modeling: scoring, folding and refinement of coarse-grained models. [My Copy] BMC structural biology, Vol. 8 (11 August 2008), 36. by Dorota Latek, Andrzej Kolinski posted to structure restraints protein predict contact cabs by saunders on 2009-12-19 15:46:00 as along with 4 people RamuAnandakrishnan mcbla sterl0601 j3xucite
	A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2655-2662. by Qiwen Dong, Shuigeng Zhou, Jihong Guan posted to predict contact coevolution by dfdong on 2009-12-05 05:05:39 as along with 1 person j3xucite
	A comprehensive assessment of sequence-based and template-based methods for protein contact prediction [My Copy] In Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 924-931. by Sitao Wu, Yang Zhang posted to predict contact coevolution by dfdong on 2009-12-05 05:04:41 as
	Statistical analysis and prediction of protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 3. (19 May 2005), pp. 353-366. by Andrew J. Bordner, Ruben Abagyan posted to predict patch docking complex by dfdong on 2009-11-28 02:24:30 as along with 8 people and 2 groups boris_aguilar barry bicko lyongu ameetsoni cjeans Evangelia marti structural_bioinformatics Bioinformatics
	Docking Ligands into Flexible and Solvated Macromolecules. 5. Force-Field-Based Prediction of Binding Affinities of Ligands to Proteins [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 11. (23 November 2009), pp. 2564-2571. by Pablo Englebienne, Nicolas Moitessier posted to tuning structures scoring roc proteinligand protein predict inactives ensembles empirical discriminate decoys crystal cross-dock conformational coefficients binding affinities actives by zimbo1 on 2009-11-27 07:49:48 as along with 2 people middledomain nickolay
	Protein binding site prediction using an empirical scoring function [My Copy] Nucl. Acids Res., Vol. 34, No. 13. (7 August 2006), pp. 3698-3707. by Shide Liang, Chi Zhang, Song Liu, Yaoqi Zhou posted to seq_interface predict docking by dfdong on 2009-11-23 08:33:29 as along with 4 people iaolier bicko emidio_capriotti marti
	Protein structure prediction via combinatorial assembly of sub-structural units [My Copy] Bioinformatics, Vol. 19, No. suppl_1. (3 July 2003), pp. i158-168. by Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson posted to segment predict folding by dfdong on 2009-11-11 09:05:22 as along with 1 person chad_davis
	Finding of residues crucial for supersecondary structure formation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18996-19000. by Alexander E. Kister, Israel Gelfand posted to predict folding by dfdong on 2009-11-11 07:10:57 as along with 1 person zwang
	Cardiovascular Reactivity and Development of Preclinical and Clinical Disease States [My Copy] Psychosom Med, Vol. 65, No. 1. (1 January 2003), pp. 46-62. by Frank A. Treiber, Thomas Kamarck, Neil Schneiderman, David Sheffield, Gaston Kapuku, Teletia Taylor posted to stress review reactivity predict cvd by sophiebostock on 2009-11-09 13:48:46 as
	Sympathoadrenal Stress Reactivity Is a Predictor of Future Blood Pressure: An 18-Year Follow-Up Study [My Copy] Hypertension, Vol. 52, No. 2. (1 August 2008), pp. 336-341. by Arnljot Flaa, Ivar K. Eide, Sverre E. Kjeldsen, Morten Rostrup posted to sympathetic stress reactivity pressure predict pathways longitudinal hypertension blood by sophiebostock on 2009-11-09 11:50:35 as along with 1 person ajw
	An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels. [My Copy] Journal of molecular biology, Vol. 340, No. 2. (2 July 2004), pp. 307-318. by Sarel J. Fleishman, Ofer Yifrach, Nir Ben-Tal posted to tree_path predict coevolution by dfdong on 2009-11-04 08:10:19 as along with 3 people qluo cjeans mingzhi
	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232. by Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, Ruth Nussinov posted to review predict ppi complex analysis by dfdong on 2009-11-04 03:28:16 as along with 12 people and 3 groups jinghu_fandm daforerog qluo SaraNasser mikaellund reyez diamantis apaydin barry semin renatomilani svozil structural_bioinformatics McCammon Bioinformatics
	Predicting domain-domain interactions using a parsimony approach [My Copy] Genome Biology, Vol. 7, No. 11. (09 November 2006), R104. by Katia Guimaraes, Raja Jothi, Elena Zotenko, Teresa Przytycka posted to predict ddi by dfdong on 2009-11-04 03:27:18 as along with 6 people qluo marti cerca phoenixzxl carlk saket
	Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics [My Copy] BMC Evolutionary Biology, Vol. 8, No. 1. (03 December 2008), 327. by J. Gregory Caporaso, Sandra Smit, Brett Easton, Lawrence Hunter, Gavin Huttley, Rob Knight posted to sequence_weighting predict coevolution by dfdong on 2009-11-04 03:26:15 as along with 4 people and 1 group mgomes qluo sjcockell djkt iSEEM
	Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences. [My Copy] Journal of molecular biology, Vol. 319, No. 3. (7 June 2002), pp. 729-743. by K. Fukami-Kobayashi, D. R. Schreiber, S. A. Benner posted to tree_path predict coevolution by dfdong on 2009-11-04 03:25:40 as along with 3 people chica qluo ramensky
	In silico two-hybrid system for the selection of physically interacting protein pairs [My Copy] Proteins: Structure, Function, and Genetics, Vol. 47, No. 2. (2002), pp. 219-227. by Florencio Pazos, Alfonso Valencia posted to predict ppi coevolution by dfdong on 2009-11-04 03:24:54 as along with 3 people qluo Robinder tale
	ISIS: interaction sites identified from sequence. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 2. (15 January 2007), pp. e13-16. by Yanay Ofran, Burkhard Rost posted to predict docking coevolution by dfdong on 2009-11-04 03:23:25 as along with 2 people bicko qluo
	Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data. [My Copy] Proteins. , Vol. 61, No. 1. (1 October 2005), pp. 21-35. by H. Chen, H. X. Zhou posted to predict ml docking complex coevolution by dfdong on 2009-11-04 03:23:02 as along with 2 people qluo karbak
	Prediction of Protein-Protein Interface Residues Using Sequence Neighborhood and Surface Properties [My Copy] Advances in Neural Networks - ISNN 2006 (2006), pp. 660-666. by Yasir Arafat, Joarder Kamruzzaman, Gour Karmakar posted to window predict complex coevolution by dfdong on 2009-11-04 03:22:03 as along with 1 person qluo
	Improved residue contact prediction using support vector machines and a large feature set. [My Copy] BMC bioinformatics, Vol. 8 (02 April 2007), 113. by Jianlin Cheng, Pierre Baldi posted to predict ml contact by dfdong on 2009-11-04 02:40:56 as along with 3 people iaolier pjcite ndiaz
	Using inferred residue contacts to distinguish between correct and incorrect protein models. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 14. (15 July 2008), pp. 1575-1582. by Christopher S. Miller, David Eisenberg posted to predict decoy contact by dfdong on 2009-11-04 02:11:04 as along with 1 group MuraLab
	Insights into Protein–Protein Interfaces using a Bayesian Network Prediction Method [My Copy] Journal of Molecular Biology, Vol. 362, No. 2. (15 September 2006), pp. 365-386. by James R. Bradford, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead posted to predict docking complex by dfdong on 2009-11-03 15:05:10 as along with 8 people and 2 groups barry conkymacro ameetsoni grahamc massivemayhem phoenixzxl marti paolomarcatili structural_bioinformatics Bioinformatics
	Interaction-site prediction for protein complexes: a critical assessment [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2203-2209. by Huan-Xiang Zhou, Sanbo Qin posted to predict docking complex by dfdong on 2009-11-03 15:03:56 as along with 14 people jinghu_fandm flbarroso timg phoenixzxl tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi marti higueruelo kintoki
	Accurate Prediction of Peptide Binding Sites on Protein Surfaces [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (27 March 2009), e1000335. by Evangelia Petsalaki, Alexander Stark, Eduardo García-Urdiales, Robert B. Russell posted to predict docking complex by dfdong on 2009-11-03 15:02:34 as along with 8 people and 1 group higueruelo pablocarb nickolay phoenixzxl neils idoerg sobolevnrm paulschlesinger baker-group
	Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1513-1520. by Nurcan Tuncbag, Attila Gursoy, Ozlem Keskin posted to predict docking complex by dfdong on 2009-11-03 15:02:04 as along with 6 people and 1 group okapi ubcg08l marti apaydin kshameer phoenixzxl structural_bioinformatics
	ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2882-2889. by Gerald Quon, Quaid Morris posted to sequencing python predict gene expression cancer algorithm by torfinnnome on 2009-10-28 15:01:57 as along with 5 people renatomilani ptrobajo brianb nuin bgordski
	Exercises in prognostication: crystal structures and protein folding. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 40. (5 October 2004), pp. 14309-14311. by Jack D. Dunitz, Harold A. Scheraga posted to scd predict crystal by dimka on 2009-10-15 19:11:28 as
	A third blind test of crystal structure prediction [My Copy] Acta Crystallographica Section B, Vol. 61, No. 5. (01 Oct 2005), pp. 511-527. by G. M. Day, W. D. S. Motherwell, H. L. Ammon, et al.S. X. M. Boerrigter, R. G. Della Valle, E. Venuti, A. Dzyabchenko, J. D. Dunitz, B. Schweizer, B. P. van Eijck, P. Erk, J. C. Facelli, V. E. Bazterra, M. B. Ferraro, D. W. M. Hofmann, F. J. J. Leusen, C. Liang, C. C. Pantelides, P. G. Karamertzanis, S. L. Price, T. C. Lewis, H. Nowell, A. Torrisi, H. A. Scheraga, Y. A. Arnautova, M. U. Schmidt, P. Verwer posted to predict csp crystal by dimka on 2009-10-15 19:01:55 as
	Autotagger: A Model for Predicting Social Tags from Acoustic Features on Large Music Databases [My Copy] Journal of New Music Research, Vol. 37, No. 2. (2008), pp. 115-135. by Thierry Bertin-Mahieux, Douglas Eck, François Maillet, Paul Lamere posted to tag predict jnmr content 2008 by maximzhao on 2009-09-06 10:25:53 as along with 2 people and 1 group eddymier asterix77 Music Information Retrieval - Audio Similarity and Retrieval
	How well can hospital readmission be predicted in a cohort of hospitalized children? A retrospective, multicenter study. [My Copy] Pediatrics, Vol. 123, No. 1. (January 2009), pp. 286-293. by Chris Feudtner, James E. Levin, Rajendu Srivastava, et al.Denise M. Goodman, Anthony D. Slonim, Vidya Sharma, Samir S. Shah, Susmita Pati, Crayton Fargason, Matt Hall posted to predict by wilvc on 2009-08-03 19:22:25 as
	A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1694-1701. by Jonathan D. Wren posted to analysis data divide estimate expression functions gene global literature meta microarray predict unknown by dswan to the group Bioinformatics on 2009-06-18 11:14:32 as along with 11 people and 1 group bsamal jfr jperkins fenghezi guhjy renatomilani VGreiff mitko TRHvidsten daforerog shikin Orengo Group Journal Picks
	Contact Model for the Prediction of NMR N−H Order Parameters in Globular Proteins [My Copy] Journal of the American Chemical Society, Vol. 124, No. 43. (1 October 2002), pp. 12654-12655. by Fengli Zhang, Rafael Bruschweiler posted to order_parameter predict by yxue on 2009-06-08 19:49:31 as along with 2 people rpetrenko allmensch
	Powers and Pitfalls in Sequence Analysis: The 70% Hurdle [My Copy] Genome Research, Vol. 10, No. 4. (1 April 2000), pp. 398-400. by Peer Bork posted to predict review by pengchy on 2009-05-10 07:24:47 as
	Current tools for the identification of miRNA genes and their targets [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (18 March 2009), pp. gkp145-2433. by N. D. Mendes, A. T. Freitas, M. F. Sagot posted to microrna predict review software target by pengchy on 2009-03-24 03:27:58 as along with 18 people and 1 group frohike jfr hzoltan heliopais orzenil leemond31 tonamswish gdb ptrobajo guhjy dakelley GustavoLacerda giovenko natstreet druvus nuin valeriehilgers daforerog microRNA
	Using interest and transition models to predict visitor locations in museums [My Copy] AI Commun., Vol. 21, No. 2-3. (2008), pp. 195-202. by Fabian Bohnert, Ingrid Zukerman, Shlomo Berkovsky, Timothy Baldwin, Liz Sonenberg posted to and in interest lecture-9 locations models museums predict to transition using visitor by yuanzhou to the group Adaptive-Web on 2009-03-18 01:09:31 as
	Efficacy and tolerability of doxazosin and finasteride, alone or in combination, in treatment of symptomatic benign prostatic hyperplasia: the Prospective European Doxazosin and Combination Therapy (PREDICT) trial. [My Copy] Urology, Vol. 61, No. 1. (January 2003), pp. 119-126. by R. S. Kirby, C. Roehrborn, P. Boyle, et al.G. Bartsch, A. Jardin, M. M. Cary, M. Sweeney, E. B. Grossman, posted to bph doxazosin finasteride predict trial by soarthroughlife on 2009-02-10 22:57:48 as
	Can doctors accurately predict the life expectancy of patients with terminal cancer? [My Copy] Palliat Med, Vol. 1, No. 2. (1 June 1987), pp. 165-166. by L. H. Heyse-Moore, V. E. Johnson-Bell posted to accurately cancer expectancy life of patients predict terminal the with by kfmorton on 2009-02-05 06:03:06 as
	Molecular-thermodynamic approach to predict micellization, phase behavior and phase separation of micellar solutions. I. Application to nonionic surfactants [My Copy] The Journal of Chemical Physics, Vol. 92, No. 6. (1990), pp. 3710-3724. by Sudhakar Puvvada, Daniel Blankschtein posted to and application approach behavior i micellar micellization molecular-thermodynamic nonionic of phase predict separation solutions surfactants to by htn4g on 2009-01-23 20:18:53 as
	Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. [My Copy] Genome research, Vol. 17, No. 12. (7 December 2007), pp. 1850-1864. by J. Graham Ruby, Alexander Stark, Wendy K. Johnston, Manolis Kellis, David P. Bartel, Eric C. Lai posted to drosophila expression microrna predict target by pengchy on 2009-01-12 02:26:02 as along with 9 people and 3 groups isimpson valeriehilgers hrogers stajich lp2 cabbagezs heliopais urgi Alexander_Kanitz Jarman Lab microRNA Mycology
	Most mammalian mRNAs are conserved targets of microRNAs [My Copy] Genome Research In Genome Research, Vol. 19, No. 1. (27 January 2009), pp. 92-105. by Robin C. Friedman, Kyle K. Farh, Christopher B. Burge, David P. Bartel posted to conservation microrna predict target targetscan by pengchy on 2009-01-12 02:13:43 as along with 19 people and 2 groups ilyashl danaiancu hzoltan giovenko gbloeb sterovetta gdb guhjy jfr qfwills druvus felsani heliopais dchughes valeriehilgers Stew fpattyn MSchipper samgj microRNA Bioinformatics - CRUK
	Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes [My Copy] Genome Res. (7 November 2007), gr.6593807. by Alexander Stark, Pouya Kheradpour, Leopold Parts, et al.Julius Brennecke, Emily Hodges, Gregory J. Hannon, Manolis Kellis posted to comparative_genomics drosophila microrna predict by pengchy on 2009-01-12 02:05:25 as along with 6 people and 2 groups valeriehilgers stajich lp2 cabbagezs heliopais maralena microRNA Mycology
	Using a kernel density estimation based classifier to predict species-specific microRNA precursors [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008) by Darby Chang, Chih C. Wang, Jian W. Chen posted to algorithm microrna predict species-specific by pengchy on 2009-01-12 01:26:26 as along with 2 people and 1 group jfr mhamada microRNA
	Filtering of false positive microRNA candidates by a clustering-based approach [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008) by Wing S. Leung, Marie Lin, David Cheung, S. M. Yiu posted to cluster microrna predict by pengchy on 2009-01-12 01:17:10 as along with 1 person and 1 group jfr microRNA
	MiRTif: a support vector machine-based microRNA target interaction filter [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008) by Yuchen Yang, Yu P. Wang, Kuo B. Li posted to microrna predict software target by pengchy on 2009-01-12 01:13:55 as along with 3 people and 1 group jfr heliopais guhjy microRNA
	Computational prediction of candidate miRNAs and their targets from Medicago truncatula non-protein-coding transcripts. [My Copy] In silico biology, Vol. 8, No. 3-4. (2008), pp. 291-306. by J. Wen, T. Frickey, G. F. Weiller posted to microrna predict target by pengchy on 2008-12-28 05:36:37 as along with 1 person natstreet
	HuMiTar: A sequence-based method for prediction of human microRNA targets [My Copy] Algorithms for Molecular Biology, Vol. 3, No. 1. (2008), 16. by Jishou Ruan, Hanzhe Chen, Lukasz Kurgan, Ke Chen, Chunsheng Kang, Peiyu Pu posted to algorithm microrna predict target by pengchy on 2008-12-25 04:48:54 as along with 6 people and 1 group danaiancu heliopais jfr nuin guhjy valeriehilgers microRNA
	MicroRNA target prediction by expression analysis of host genes [My Copy] Genome Research, Vol. 19, No. 3. (16 March 2009), pp. 481-490. by Vincenzo A. Gennarino, Marco Sardiello, Raffaella Avellino, et al.Nicola Meola, Vincenza Maselli, Santosh Anand, Luisa Cutillo, Andrea Ballabio, Sandro Banfi posted to expression-profiles microrna predict target by pengchy on 2008-12-24 01:42:39 as along with 16 people and 2 groups danaiancu gbloeb ptrobajo guhjy tonamswish gennarino heliopais megraw tmmurali jfr samgj valeriehilgers Zephyrus giovenko daforerog ealloza microRNA Roswell Cancer Crosstalk
	High-resolution human core-promoter prediction with CoreBoost_HM. [My Copy] Genome research, Vol. 19, No. 2. (7 February 2009), pp. 266-275. by Xiaowo Wang, Zhenyu Xuan, Xiaoyue Zhao, Yanda Li, Michael Q. Zhang posted to human mirna predict promoter by pengchy on 2008-12-03 13:53:06 as along with 6 people and 1 group guhjy megraw tonamswish rpatward abizar maximilianh microRNA
	Predicting aberrant CpG island methylation [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 21. (14 October 2003), pp. 12253-12258. by F. A. Feltus, E. K. Lee, J. F. Costello, C. Plass, P. M. Vertino posted to methylation predict by huiminC on 2008-11-07 21:41:26 as along with 3 people christoffpale oelemento kaarsinogen
	Computational Approaches for Predicting Protein---Protein Interactions: A Survey [My Copy] J. Med. Syst., Vol. 30, No. 1. (February 2006), pp. 39-44. by Jingkai Yu, Farshad Fotouhi posted to analogies interaction predict protein by eduardod on 2008-10-28 20:14:40 as along with 1 person iris_2001

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microrna	12
coevolution	9
complex	8
docking	8
target	8
context-aware	6
expression	6
pervasive	6
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review	6
contact	5
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behavior	4
ppi	4
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therapy	4
algorithm	3
analysis	3
cancer	3
crystal	3
depression	3
home	3
lbs	3
microarray	3
probability	3
procalcitonin	3
sepsis	3
software	3
stress	3
structure	3
user-centric	3
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blood	2
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divide	2
drosophila	2
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folding	2
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functions	2
global	2
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meta	2
ml	2
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proteinligand	1
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render	1
restraints	1
rosetta	1
seq_interface	1
sequence_weighting	1
sympathetic	1
transition	1
transthyretin	1
using	1
validity	1

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