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	Case studies in interannual to decadal climate predictability [My Copy] Climate Dynamics by Leon Hermanson, Rowan Sutton posted to skill seasonal prediction ocean interannual decadal climate by nurban on 2009-11-21 00:34:44 as along with 1 person DanHodson
	Decadal climate prediction (project GCEP) [My Copy] Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 367, No. 1890. (13 March 2009), pp. 925-937. by Keith Haines, Leon Hermanson, Chunlei Liu, et al.Debbie Putt, Rowan Sutton, Alan Iwi, Doug Smith posted to skill prediction decadal climate by nurban on 2009-11-21 00:34:15 as
	Folding simulations of gramicidin A into the beta-helix conformations: Simulated annealing molecular dynamics study [My Copy] The Journal of Chemical Physics, Vol. 131, No. 16. (2009), 165103. by Takaharu Mori, Yuko Okamoto posted to protein-folding prediction membrane-proteins by agrossfield on 2009-11-20 17:43:53 as
	Comparative interactomics. [My Copy] FEBS letters In Systems Biology, Vol. 579, No. 8. (21 March 2005), pp. 1828-1833. by Gianni Cesareni, Arnaud Ceol, Caius Gavrila, Luisa Montecchi M. Palazzi, Maria Persico, Maria Victoria V. Schneider posted to prediction ppi homology database by aceol on 2009-11-20 10:01:05 as along with 2 people chica Evangelia
	HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms. [My Copy] BMC bioinformatics, Vol. 6 Suppl 4 (1 December 2005) by Maria Persico, Arnaud Ceol, Caius Gavrila, Robert Hoffmann, Arnaldo Florio, Gianni Cesareni posted to prediction ppi database by aceol on 2009-11-20 10:00:42 as along with 4 people Scis0000002 cerca maryee mariap3636
	Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R124. by Ana Marques, Chris Ponting posted to prediction ncrna identification genomics annotation by hrogers on 2009-11-19 12:20:22 as along with 5 people and 2 groups yogita bdessailly daforerog reyez gdb Orengo Group Journal Picks Journal picks
	Information theory provides a comprehensive framework for the evaluation of protein structure predictions. [My Copy] Proteins, Vol. 74, No. 3. (15 February 2009), pp. 701-711. by Rosemarie Swanson, Marina Vannucci, Jerry W. Tsai posted to theory structural-biology similarity_measures protein prediction information framework by bertelsen on 2009-11-18 20:39:06 as
	Exploiting availability prediction in distributed systems [My Copy] In NSDI'06: Proceedings of the 3rd conference on Networked Systems Design \& Implementation (2006), pp. 6-6. by James W. Mickens, Brian D. Noble posted to trace prediction planetlab-trace overnet-trace microsoft-trace churn availability by matteodellamico on 2009-11-18 13:28:44 as along with 2 people MiamiGuyToo gerold
	An examination of the influence of surprise on judges and jurors’ outcome effects [My Copy] Critical Perspectives on Accounting, Vol. 19, No. 7. (November 2008), pp. 1020-1033. by K. Charron, D. Lowe posted to surprise prediction outcome legal jurors judges influence hindsight foresight examination effects dm by H-Arrietaumn to the group 8_01 on 2009-11-18 12:23:31 as along with 1 person MarkPezzo
	MONSSTER: a method for folding globular proteins with a small number of distance restraints. [My Copy] Journal of molecular biology, Vol. 265, No. 2. (17 January 1997), pp. 217-241. by J. Skolnick, A. Kolinski, A. R. Ortiz posted to structure restraints prediction by saunders on 2009-11-18 11:26:11 as
	Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model. [My Copy] Proteins, Vol. 32, No. 4. (1 September 1998), pp. 475-494. by A. Kolinski, J. Skolnick posted to structure restraints prediction by saunders on 2009-11-18 11:23:49 as along with 2 people wilbur dgront
	Progress and challenges in protein structure prediction [My Copy] Curr. Opin. Struct. Biol. In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 342-348. by Yang Zhang posted to template structure review prediction free by saunders on 2009-11-18 11:02:15 as along with 11 people ameetsoni rodrigofaccioli jperkins newton1234 hadesnumb kgutwin chad_davis barry phoenixzxl marck zwang
	Lost in translation: an assessment and perspective for computational microRNA target identification [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3049-3055. by Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou posted to prediction microrna computational by dswan on 2009-11-18 10:40:01 as along with 11 people and 1 group pattersonee Jporci heliopais kintoki dandaman kshameer lwaldron toni_marco frohike lp2 daforerog Journal picks
	Identification of genes associated with multiple cancers via integrative analysis [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 535. by Shuangge Ma, Jian Huang, Meena Moran posted to prediction microarray integration genetics data cancer by neils on 2009-11-17 22:22:30 as
	Towards the mammalian interactome: Inference of a core mammalian interaction set in mouse [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2009), NA. by Chang J. Shin, Melissa J. Davis, Mark A. Ragan posted to prediction ppi by aceol on 2009-11-17 14:34:14 as along with 1 person sjcockell
	Theoretical tools for understanding and aiding dynamic decision making [My Copy] Journal of Mathematical Psychology, Vol. 53, No. 3. (06 June 2009), pp. 126-138. by Jerome R. Busemeyer, Timothy J. Pleskac posted to prediction operator model method calculation by sherdim to the group EPLab on 2009-11-17 09:02:50 as along with 1 person jasonasm
	Forward prediction-based approach to target-tracking with Out-of-Sequence Measurements [My Copy] Decision and Control, 2008. CDC 2008. 47th IEEE Conference on (11 December 2008), pp. 1326-1333. by F. Rheaume, A. R. Benaskeur posted to prediction out-of-sequence oosm measurements forward by lambertch on 2009-11-16 16:51:28 as along with 1 person Xenophon
	Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules. [My Copy] Nature protocols, Vol. 3, No. 10. (18 September 2008), pp. 1578-1588. by Jean-Valery V. Turatsinze, Morgane Thomas-Chollier, Matthieu Defrance, Jacques van Helden posted to tools tfbs prediction cis-regulatory-element by isimpson on 2009-11-16 15:33:35 as along with 7 people and 1 group kshameer heliopais druvus fhsantanna polivares idonaldson natstreet BergmanLab
	Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services: an example with ChIP-chip data. [My Copy] Nature protocols, Vol. 3, No. 10. (18 September 2008), pp. 1604-1615. by Olivier Sand, Morgane Thomas-Chollier, Eric Vervisch, Jacques van Helden posted to web-services tfbs soap prediction cis-regulatory-element by isimpson on 2009-11-16 15:32:06 as along with 2 people and 1 group druvus polivares BergmanLab
	The relationship between Precision-Recall and ROC curves [My Copy] In ICML '06: Proceedings of the 23rd international conference on Machine learning (2006), pp. 233-240. by Jesse Davis, Mark Goadrich posted to roc prediction by djkt on 2009-11-14 20:08:06 as along with 8 people laral rlichten msampson abellogin yaroslavvb imrchen hehrig tvdbulck
	Identification of substrates for Ser/Thr kinases using residue based statistical pair potentials [My Copy] Bioinformatics (12 November 2009), btp633. by Narendra Kumar, Debasisa Mohanty posted to substrate statistics protein-serine-threonine prediction potential kinase energy by neils on 2009-11-14 00:51:39 as along with 1 person kshameer
	ProFunc: a server for predicting protein function from 3D structure [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_2. (1 July 2005), pp. W89-93. by Roman A. Laskowski, James D. Watson, Janet M. Thornton posted to prediction modeling by mijogiffin on 2009-11-13 18:37:01 as along with 2 people gbart siebertm
	Improving the performance of predictive process modeling for large datasets [My Copy] Computational Statistics & Data Analysis, Vol. 53, No. 8. (15 June 2009), pp. 2873-2884. by Andrew O. Finley, Huiyan Sang, Sudipto Banerjee, Alan E. Gelfand posted to statistics spatial spacetime prediction nonstationary non-gaussian mcmc hierarchical gaussian-process dimensionality-reduction bayesian by nurban on 2009-11-13 17:36:27 as
	Evaluating Parameterizations in General Circulation Models: Climate Simulation Meets Weather Prediction [My Copy] Bulletin of the American Meteorological Society, Vol. 85, No. 12. (1 December 2004), pp. 1903-1915. by Thomas J. Phillips, Gerald L. Potter, David L. Williamson, et al.Richard T. Cederwall, James S. Boyle, Michael Fiorino, Justin J. Hnilo, Jerry G. Olson, Shaocheng Xie, John J. Yio posted to weather skill prediction parameterization model gcm error climate by nurban on 2009-11-13 12:34:38 as
	Protein function prediction with the shortest path in functional linkage graph and boosting [My Copy] International Journal of Bioinformatics Research and Applications, Vol. 4, No. 4. (1 January 2008), pp. 375-384. by Xing-Ming Zhao, Luonan Chen, Kazuyuki Aihara posted to protein_function prediction_accuracy prediction ontology high-throughput go gene_ontology gene_expression_data function bioinformatics by davidmam on 2009-11-13 10:50:58 as
	Joining forces in the quest for orthologs [My Copy] Genome Biology, Vol. 10, No. 9. (2009), 403. by Toni Gabaldon, Christophe Dessimoz, Julie H. Jones, Albert Vilella, Erik Sonnhammer, Suzanna Lewis posted to prediction orthology orthologue 13-nov-09 by bdessailly to the group Orengo Group Journal Picks on 2009-11-13 10:12:10 as along with 5 people and 1 group operon kshameer tmmurali ppgardne druvus Journal picks
	A brighter future for protein structure prediction [My Copy] Nature Structural & Molecular Biology, Vol. 6, No. 2. (01 February 1999), pp. 108-111. by Patrice Koehl, Michael Levitt posted to structure protein prediction holy grail by saunders on 2009-11-12 17:44:40 as
	Predicting protein three-dimensional structure [My Copy] Current Opinion in Biotechnology, Vol. 10, No. 6. (1 December 1999), pp. 583-588. by J. Moult posted to structure protein prediction holy grail by saunders on 2009-11-12 17:43:59 as
	Progress in protein structure prediction. [My Copy] Current opinion in structural biology, Vol. 7, No. 3. (June 1997), pp. 377-387. by D. T. Jones posted to structure protein prediction holy grail by saunders on 2009-11-12 17:40:00 as along with 1 person j3xucite
	Protein structure prediction begins well but ends badly [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 999A. (2009), NA. by Rhodri Saunders, Charlotte M. Deane posted to tertiary structure secondary protein prediction casp bias by saunders to the group OPIG on 2009-11-12 14:21:06 as
	Relating protein pharmacology by ligand chemistry [My Copy] Nat Biotech, Vol. 25, No. 2. (07 February 2007), pp. 197-206. by Michael J. Keiser, Bryan L. Roth, Blaine N. Armbruster, Paul Ernsberger, John J. Irwin, Brian K. Shoichet posted to protein prediction pharmacology ligand drug chemical_similarity chemical_fingerprints by pablocarb on 2009-11-12 09:18:53 as along with 9 people mnishimu ucbcjbm Yanno tjimenez kuhn daevans massivemayhem dgront jerome_ucsf_slb
	Predicting new molecular targets for known drugs [My Copy] Nature, Vol. 462, No. 7270. (01 November 2009), pp. 175-181. by Michael J. Keiser, Vincent Setola, John J. Irwin, et al.Christian Laggner, Atheir I. Abbas, Sandra J. Hufeisen, Niels H. Jensen, Michael B. Kuijer, Roberto C. Matos, Thuy B. Tran, Ryan Whaley, Richard A. Glennon, Jerome Hert, Kelan L. H. Thomas, Douglas D. Edwards, Brian K. Shoichet, Bryan L. Roth posted to promiscuity prediction molecular_targets drug_target drug_discovery drug by pablocarb on 2009-11-12 09:16:14 as along with 14 people and 1 group venancio okapi ahmetbakan zufar zwang TRHvidsten phoenixzxl qshao Yanno mnishimu tmmurali sjcockell seb1 abhishek_tiwari Journal picks
	Prediction and simulation of motion in pairs of transmembrane alpha-helices [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. e212-218. by Angela Enosh, Sarel J. Fleishman, Nir Ben-Tal, Dan Halperin posted to transmembrane_helices simulation prediction alpha-helices by viktor21614 on 2009-11-11 16:07:37 as
	Relative predicted protein levels of functionally associated proteins are conserved across organisms [My Copy] Nucl. Acids Res., Vol. 33, No. 3. (17 February 2005), pp. 1051-1057. by Gila Lithwick, Hanah Margalit posted to usage protein prediction function codon by davidmam on 2009-11-11 14:50:52 as
	FINDSITE: a combined evolution/structure-based approach to protein function prediction [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 378-391. by Jeffrey Skolnick, Michal Brylinski posted to structure protein prediction function evolution by davidmam on 2009-11-11 14:47:00 as along with 8 people and 1 group jperkins reyez TRHvidsten iaolier dimka gwallau operon idoerg Orengo Group Journal Picks
	Simultaneous prediction of protein folding and docking at high resolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18978-18983. by Rhiju Das, Ingemar AndrÃ©, Yang Shen, et al.Yibing Wu, Alexander Lemak, Sonal Bansal, Cheryl H. Arrowsmith, Thomas Szyperski, David Baker posted to protein prediction folding by zwang on 2009-11-11 10:39:19 as along with 4 people ahmetbakan paulschlesinger apaydin ibuch
	The Nottingham prognostic index for invasive carcinoma of the breast. [My Copy] Pathology oncology research : POR, Vol. 14, No. 2. (1 June 2008), pp. 113-115. by Andrew H. Lee, Ian O. Ellis posted to prognosis prediction index breast by misonneh on 2009-11-10 05:55:51 as along with 1 person Zephyrus
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to protein prediction function bioinformatics by pansapiens on 2009-11-10 01:05:23 as along with 19 people and 1 group kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to protein_protein_binding prediction hotspot by apaydin on 2009-11-08 07:57:00 as along with 6 people and 1 group sillitoe kshameer zwang phoenixzxl higueruelo neils Orengo Group Journal Picks
	Computer-assisted methods for molecular structure elucidation: realizing a spectroscopist's dream [My Copy] Journal of Cheminformatics, Vol. 1, No. 1. (2009), 3. by Mikhail Elyashberg, Kirill Blinov, Sergey Molodtsov, Yegor Smurnyy, Antony Williams, Tatiana Churanova posted to structure prediction nmr elucidation computer-assisted case automated by ChemSpiderman on 2009-11-06 16:58:20 as
	Prediction by the ASOG method of liquid–liquid equilibrium for binary and ternary systems containing 1-alkyl-3-methylimidazolium hexafluorophosphate [My Copy] Fluid Phase Equilibria, Vol. 287, No. 1. (25 December 2009), pp. 43-49. by Pedro A. Robles, Teófilo A. Graber, Martín Aznar posted to ternary rtil prediction lle citation binary asog by majdula on 2009-11-06 14:37:02 as
	Applying an Attentional Set to Perceived and Remembered Features [My Copy] PLoS ONE, Vol. 4, No. 10. (29 October 2009), e7613. by Duncan E. Astle, Anna C. Nobre, Gaia Scerif posted to prediction memory erp attention anticipation by sherdim to the group EPLab on 2009-11-05 14:18:37 as
	Empirical H-alpha emitter count predictions for dark energy surveys [My Copy] (3 Nov 2009) by J. E. Geach, A. Cimatti, W. Percival, et al.Y. Wang, L. Guzzo, G. Zamorani, P. Rosati, L. Pozzetti, A. Orsi, C. M. Baugh, C. G. Lacey, B. Garilli, P. Franzetti, J. R. Walsh, M. Kümmel posted to simulation prediction halpha bao astro-ph by mojin on 2009-11-05 10:37:47 as
	Methylated NEUROD1 promoter is a marker for chemosensitivity in breast cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 11. (1 June 2008), pp. 3494-3502. by Heidi Fiegl, Allison Jones, Cornelia Hauser-Kronberger, et al.Georg Hutarew, Roland Reitsamer, Robin L. Jones, Mitch Dowsett, Elisabeth Mueller-Holzner, Gudrun Windbichler, Günter Daxenbichler, Georg Goebel, Christian Ensinger, Ian Jacobs, Martin Widschwendter posted to response prediction pharmacogenetics neurod1 neoadjuvant methylation gene_specific_methylation epigenetics circ_dna chemotherapy breast by misonneh on 2009-11-04 21:21:37 as
	Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse. [My Copy] Developmental cell, Vol. 17, No. 4. (20 October 2009), pp. 568-579. by Miriam R. Kantorovitz, Majid Kazemian, Sarah Kinston, et al.Diego Miranda-Saavedra, Qiyun Zhu, Gene E. Robinson, Berthold Göttgens, Marc S. Halfon, Saurabh Sinha posted to tf rodents prediction human fly enhancer development by djkt on 2009-11-04 20:55:41 as along with 1 person maximilianh
	Event-Related Potentials Reveal Rapid Verification of Predicted Visual Input [My Copy] PLoS ONE, Vol. 4, No. 3. (31 March 2009), e5047. by Michael Dambacher, Martin Rolfs, Kristin Göllner, Reinhold Kliegl, Arthur M. Jacobs posted to word visual semantic prediction erp early by kimlab on 2009-11-04 20:54:12 as along with 3 people amorgan77 Dendrites dvdsn
	Structure-Based Predictive Models for Allosteric Hot Spots [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (9 October 2009), e1000531. by Omar N. A. Demerdash, Michael D. Daily, Julie C. Mitchell posted to structure prediction model hot_spots allostery by nickolay on 2009-11-04 16:08:16 as along with 3 people and 1 group apaydin klexa barry McCammon
	Docking Ligands into Flexible and Solvated Macromolecules. 5. Force-Field-Based Prediction of Binding Affinities of Ligands to Proteins [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Pablo Englebienne, Nicolas Moitessier posted to solvent prediction nov09 ligand flexibility docking affinity by nickolay on 2009-11-03 20:35:14 as
	Identification and prediction of stochastic dynamical systems in a polynomial chaos basis [My Copy] Computer Methods in Applied Mechanics and Engineering, Vol. 194, No. 12-16. (08 April 2005), pp. 1641-1654. by R. Ghanem, S. Masri, M. Pellissetti, R. Wolfe posted to stochastic reduced prediction nonparametric nonlinear dynamics detection by nurban on 2009-11-03 15:59:13 as
	I'll Walk This Way: Eyes Reveal the Direction of Locomotion and Make Passersby Look and Go the Other Way [My Copy] Psychological Science, Vol. 9999, No. 9999. (2009) by Lauri Nummenmaa, Jukka Hyönä, Jari K. Hietanen posted to trajectory prediction movement gaze eye by hkreysa on 2009-11-03 14:46:08 as

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protein	412
structure	392
bioinformatics	230
rna	195
interaction	139
network	132
function	118
model	111
target	109
review	106
microrna	105
secondary	93
mirna	92
binding	88
statistics	86
climate	82
algorithm	80
cancer	76
gene	76
protein-protein	71
markets	69
sequence	65
modeling	63
breast	60
human	59
motif	59
ppi	59
expression	53
ncrna	52
microarray	49
performance	49
computational	48
interactions	48
methods	47
domain	46
measure	46
method	46
transcription	45
genomics	44
genome	42
evolution	41
prognosis	40
site	40
classification	37
comparative	37
skill	36
modelling	35
svm	35
tfbs	35
learning	34
bayesian	33
forecasting	33
methodspaper	32
mobility	32
regulation	32
thelist	32
traffic	32
folding	31
software	31
drosophila	30
dynamics	30
networks	30
analysis	29
database	29
recognition	29
bias	28
tool	28
disease	27
docking	27
ensemble	27
fold	27
time	27
weather	27
signature	26
alignment	25
data	25
performance-engineering	25
risk	25
simulation	25
annotation	24
binding_site	24
clustering	24
promoter	24
uncertainty	24
cis_regulatory_elements	23
functional	23
neural	23
dna	22
information	22
roc	22
specificity	22
yeast	22
enhancer	21
integration	21
nonlinear	21
pattern	21
epigenetics	20
interfaces	20
link	20
membrane	20

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