Tag prediction_interface [24 articles] Export

Recent papers classified by the tag prediction_interface.

	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to svm structure_aided prediction_interface by phoenixzxl on 2009-11-04 01:31:12 as along with 5 people apaydin kshameer zwang higueruelo neils
	The interwinding nature of protein-protein interfaces and its implication for protein complex formation. [My Copy] Bioinformatics (Oxford, England) (29 September 2009), btp563. by Kei Yura, Steven Hayward posted to prediction_interface complex by phoenixzxl on 2009-09-30 02:18:32 as along with 3 people dfdong higueruelo tprpip
	Prediction of antigenic epitopes on protein surfaces by consensus scoring [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 302. by Shide Liang, Dandan Zheng, Chi Zhang, Martin Zacharias posted to prediction_interface by phoenixzxl on 2009-09-23 02:16:54 as along with 2 people zwang niallhaslam
	Regression Applied to Protein Binding Site Prediction and Comparison with Classification [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 September 2009), 276. by Joachim Giard, Jerome Ambroise, Jean L. Gala, Benoit Macq posted to prediction_interface machine_learning by phoenixzxl on 2009-09-07 03:11:26 as along with 1 person jinghu_fandm
	Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000490. by Roberto Mosca, Carles Pons, Juan Fernández-Recio, Patrick Aloy posted to structure prediction_interface by phoenixzxl on 2009-08-31 07:52:26 as along with 4 people and 1 group klexa bdessailly zwang TRHvidsten Orengo Group Journal Picks
	A Tool for calculating binding-site residues on proteins from PDB Structures [My Copy] BMC Structural Biology, Vol. 9, No. 1. (2009), 52. by Jing Hu, Changhui Yan posted to prediction_interface by phoenixzxl on 2009-08-06 02:26:46 as along with 3 people dfdong balewis peteruetz
	Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. 1513-1520. by Nurcan Tuncbag, Attila Gursoy, Ozlem Keskin posted to prediction_interface by phoenixzxl on 2009-04-15 02:01:38 as along with 5 people and 1 group dfdong ubcg08l marti apaydin kshameer structural_bioinformatics
	Accurate Prediction of Peptide Binding Sites on Protein Surfaces [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (27 March 2009), e1000335. by Evangelia Petsalaki, Alexander Stark, Eduardo García-Urdiales, Robert B. Russell posted to prediction_interface by phoenixzxl on 2009-04-01 03:49:24 as along with 8 people and 1 group dfdong higueruelo pablocarb nickolay neils idoerg sobolevnrm paulschlesinger baker-group
	Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000316. by Jessica H. Fong, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, Michail Y. Lobanov, Oxana V. Galzitskaya, Anna R. Panchenko posted to prediction_interface structure structure_aided by phoenixzxl on 2009-04-01 03:47:11 as along with 7 people kiekyon agustinarce pablocarb chica zwang bobychan bpcusack
	A feature-based approach to modeling protein-protein interaction hot spots [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (1 May 2009), pp. 2672-2687. by Kyu-Il Cho, Dongsup Kim, Doheon Lee posted to machine_learning prediction_interface prediction_ppi svm tutorial by phoenixzxl on 2009-03-11 08:05:19 as along with 5 people pablocarb higueruelo flbarroso zwang neils
	Predicting RNA-binding sites of proteins using support vector machines and evolutionary information [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008), S6. by Cheng W. Cheng, Emily Su, Jenn K. Hwang, Ting Y. Sung, Wen L. Hsu posted to evolution prediction_interface svm by phoenixzxl on 2009-03-02 09:53:54 as along with 3 people balewis iaolier zwang
	Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (23 January 2009), e1000267. by Stefan Engelen, Ladislas A. Trojan, Sophie Sacquin-Mora, Richard Lavery, Alessandra Carbone posted to evolution prediction_interface sequence_alignment by phoenixzxl on 2009-02-02 08:59:00 as along with 3 people zwang kshameer druvus
	Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains [My Copy] Mol Cell Proteomics (20 November 2008), M800450-MCP200. by Tingjun Hou, Zheng Xu, Wei Zhang, et al.William A. Mclaughlin, David A. Case, Yang Xu, Wei Wang posted to domain prediction_interface specificity structure_aided by phoenixzxl on 2008-11-25 01:20:19 as along with 2 people kgutwin zwang
	A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein-Protein Interfaces [My Copy] Journal of Molecular Biology, Vol. 381, No. 2. (29 August 2008), pp. 407-418. by Ryan N. Gilbreth, Kaori Esaki, Akiko Koide, Sachdev S. Sidhu, Shohei Koide posted to prediction_interface by phoenixzxl on 2008-07-18 02:47:47 as along with 2 people mapplab zwang
	Design of multi-specificity in protein interfaces. [My Copy] PLoS computational biology, Vol. 3, No. 8. (1 August 2007), e164. by Elisabeth L. Humphris, Tanja Kortemme posted to prediction_interface specificity synthetic_biology by phoenixzxl on 2008-06-23 11:03:15 as along with 9 people and 3 groups bmduggan allmensch msuarezdiez jwm bicko Einat dpollard Scis0000002 marck structural_bioinformatics Bioinformatics EisenLab
	Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7708-7713. by Hocine Madaoui, RaphaÃ«l Guerois posted to co-evolution complex prediction_interface by phoenixzxl on 2008-06-03 07:10:50 as along with 8 people dfdong qluo robfsouza RebeccaHamer orr cabbagesofdoom bicko zwang
	Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andrew J. Bordner, Andrey A. Gorin posted to complex data_integration prediction_interface by phoenixzxl on 2008-05-13 07:28:04 as along with 6 people somak bicko robfsouza chad_davis guhjy neils
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted to dynamics network_dynamic network_evolution network_ppi prediction_interface by phoenixzxl on 2008-04-06 05:22:52 as along with 23 people and 2 groups ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang carlk paolomarcatili saket structural_bioinformatics kdl
	A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity [My Copy] Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2333-2339. by E. Ferraro, A. Via, G. Ausiello, M. Helmer-Citterich posted to machine_learning prediction_ddi prediction_interface specificity by phoenixzxl on 2008-03-31 03:44:33 as
	Reaching for high-hanging fruit in drug discovery at protein–protein interfaces [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 1001-1009. by James A. Wells, Christopher L. Mcclendon posted to insight prediction_interface review by phoenixzxl on 2008-03-28 05:47:11 as along with 8 people semin allmensch ramensky cjeans chgjb higueruelo bicko guhjy
	Interaction-site prediction for protein complexes: a critical assessment [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2203-2209. by Huan-Xiang Zhou, Sanbo Qin posted to machine_learning prediction_interface prediction_ppi review by phoenixzxl on 2008-03-19 06:03:59 as along with 14 people dfdong jinghu_fandm flbarroso timg tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi marti higueruelo kintoki
	Characterization of Domain-Peptide Interaction Interface: A Case Study on the Amphiphysin-1 SH3 Domain [My Copy] Journal of Molecular Biology, Vol. 376, No. 4. (29 February 2008), pp. 1201-1214. by Tingjun Hou, Wei Zhang, David A. Case, Wei Wang posted to prediction_interface by phoenixzxl on 2008-03-17 12:11:01 as along with 1 person Evangelia
	Improved prediction of protein-protein binding sites using a support vector machines approach [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1487-1494. by James R. Bradford, David R. Westhead posted to prediction_interface svm by phoenixzxl on 2008-03-15 01:52:59 as along with 8 people bicko sriram_s chaleil ameetsoni cjeans Evangelia marti kevinemamy
	Insights into Protein-Protein Interfaces using a Bayesian Network Prediction Method [My Copy] Journal of Molecular Biology, Vol. In Press, Corrected Proof by James R. Bradford, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead posted to prediction_interface bayesian by phoenixzxl on 2008-03-15 01:51:40 as along with 8 people and 2 groups dfdong barry conkymacro ameetsoni grahamc massivemayhem marti paolomarcatili structural_bioinformatics Bioinformatics

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machine_learning	4
svm	4
complex	3
specificity	3
structure_aided	3
evolution	2
prediction_ppi	2
review	2
structure	2
bayesian	1
co-evolution	1
data_integration	1
domain	1
dynamics	1
insight	1
network_dynamic	1
network_evolution	1
network_ppi	1
prediction_ddi	1
sequence_alignment	1
synthetic_biology	1
tutorial	1

Tag prediction_interface [24 articles] Export

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