Tag proj_interprets [27 articles] Export

Recent papers classified by the tag proj_interprets.

	ProtorP: A Protein-Protein Interaction Analysis Server [My Copy] Bioinformatics (11 November 2008), btn584. by Christopher Reynolds, David Damerell, Susan Jones posted to annotation binding proj_assembly proj_interprets service structure by chad_davis on 2009-01-31 18:25:28 as along with 7 people and 1 group idoerg bicko barry behindtherabbit neils kshameer hugowill structural_bioinformatics
	HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information [My Copy] Journal of the American Chemical Society, Vol. 125, No. 7. (1 February 2003), pp. 1731-1737. by Cyril Dominguez, Rolf Boelens, Alexandre M. J. J. Bonvin posted to algorithm binding complexes docking download modelling ppi proj_assembly proj_interprets structure by chad_davis on 2009-01-14 13:34:03 as along with 10 people bmduggan laurabailey A_Coletta_Thesis betainverse dgruiz bicko bluvsh1 gloria ruvido yalexeev
	Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000232. by Wan K. Kim, Edward M. Marcotte posted to complexes evolution networks ppi proj_assembly proj_interprets statistics validation by chad_davis on 2008-12-19 09:35:41 as along with 7 people wangbo dakelley biomcgary cabbagesofdoom grahamc bpcusack tmmurali
	A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique. [My Copy] J Mol Biol, Vol. 260, No. 4. (26 July 1996), pp. 604-620. by C. J. Tsai, S. L. Lin, H. J. Wolfson, R. Nussinov posted to algorithm binding classic complexes database non-redundant ppi proj_assembly proj_interprets statistics structure by chad_davis on 2008-12-18 22:10:13 as along with 1 person bicko
	Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys. [My Copy] BMC structural biology, Vol. 8 (08 December 2008), 53. by Dan M. Bolser, Ioannis Filippis, Henning Stehr, Jose Duarte, Michael Lappe posted to algorithm binding feature_selection ppi proj_interprets statistics structure validation by chad_davis on 2008-12-18 20:51:09 as along with 3 people tcschen RamuAnandakrishnan krapnik
	3did Update: domain-domain and peptide-mediated interactions of known 3D structure. [My Copy] Nucleic acids research (25 October 2008) by Amelie Stein, Alejandro Panjkovich, Patrick Aloy posted to binding classic database embl ppi proj_assembly proj_interprets by chad_davis on 2008-10-29 16:29:48 as
	Inferring protein domain interactions from databases of interacting proteins. [My Copy] Genome Biol, Vol. 6, No. 10. (2005) by R. Riley, C. Lee, C. Sabatti, D. Eisenberg posted to algorithm binding ppi proj_assembly proj_interprets statistics structure validation by chad_davis on 2008-10-20 12:49:20 as along with 4 people maryee j3xucite iris_2001 phoenixzxl
	A comparison of MSA tools. [My Copy] Bioinformation, Vol. 2, No. 10. (2008), pp. 452-455. by N. Essoussi, K. Boujenfa, M. Limam posted to algorithm alignment proj_assembly proj_interprets review validation by chad_davis on 2008-10-20 11:14:46 as along with 1 person jwm
	An integrative approach for predicting interactions of protein regions. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by Sven-Eric E. Schelhorn, Thomas Lengauer, Mario Albrecht posted to algorithm binding complexes ppi proj_assembly proj_interprets structure by chad_davis on 2008-10-16 13:59:56 as along with 1 person kgutwin
	Optimal contact map alignment of protein-protein interfaces. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 20. (15 October 2008), pp. 2324-2328. by V. Pulim, B. Berger, J. Bienkowska posted to algorithm alignment binding complexes ppi proj_interprets structure by chad_davis on 2008-10-09 18:28:32 as along with 1 person i000
	Computational methods for the prediction of protein interactions. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 368-373. by A. Valencia, F. Pazos posted to algorithm ppi proj_assembly proj_interprets review by chad_davis on 2008-10-08 15:48:08 as along with 4 people bicko Robinder eckart_bindewald marti
	Interactome data and databases: different types of protein interaction. [My Copy] Comparative and functional genomics, Vol. 5, No. 2. (2004), pp. 173-178. by De Las, A. de Luis posted to networks ppi proj_assembly proj_interprets review by chad_davis on 2008-10-08 10:56:48 as
	APID: Agile Protein Interaction DataAnalyzer. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by C. Prieto, De Las posted to data_integration database download networks ppi proj_assembly proj_interprets service by chad_davis on 2008-10-08 10:53:05 as along with 1 person satre
	PRISM: protein interactions by structural matching. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by U. Ogmen, O. Keskin, A. S. Aytuna, R. Nussinov, A. Gursoy posted to algorithm binding ppi proj_assembly proj_interprets structure service by chad_davis on 2008-10-07 10:15:00 as along with 4 people apaydin bicko j3xucite henschel
	Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of Mycobacterium tuberculosis [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000174. by Robert Riley, Matteo Pellegrini, David Eisenberg posted to algorithm evolution ppi proj_interprets by chad_davis on 2008-10-06 13:56:25 as along with 2 people robfsouza Ema
	In different organisms, the mode of interaction between two signaling proteins is not necessarily conserved. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 32. (10 August 2004), pp. 11646-11651. by S. Y. Park, B. D. Beel, M. I. Simon, A. M. Bilwes, B. R. Crane posted to binding evolution proj_interprets structure validation by chad_davis on 2008-09-17 16:56:13 as along with 3 people chica bicko RebeccaHamer
	Analyzing Protein Interaction Networks Using Structural Information [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008) by Christina Kiel, Pedro Beltrao, Luis Serrano posted to data_integration embl networks ppi proj_assembly proj_interprets review structure by chad_davis to the group structural_bioinformatics on 2008-09-17 16:51:19 as along with 11 people msuarezdiez flbarroso kshameer Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang
	Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andrew Bordner, Andrey Gorin posted to annotation binding clustering database non-redundant proj_assembly proj_interprets structure service by chad_davis on 2008-09-16 10:09:39 as along with 6 people somak bicko robfsouza guhjy neils phoenixzxl
	MINT: the Molecular INTeraction database. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by Chatr A. Aryamontri, A. Ceol, L. M. Palazzi, et al.G. Nardelli, M. V. Schneider, L. Castagnoli, G. Cesareni posted to database ppi proj_interprets service by chad_davis on 2008-09-16 09:57:32 as along with 3 people viktor21614 massivemayhem bicko
	DAPID: a 3D-domain annotated protein-protein interaction database. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 2. (2006), pp. 206-215. by Y. C. Chen, H. C. Chen, J. M. Yang posted to database ppi proj_assembly proj_interprets service structure by chad_davis on 2008-08-26 18:18:15 as along with 1 person bicko
	PPiClust: EFFICIENT CLUSTERING OF 3D PROTEIN-PROTEIN INTERACTION INTERFACES. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 415-433. by Z. Aung, S. H. Tan, S. K. Ng, K. L. Tan posted to algorithm clustering ppi proj_assembly proj_interprets structure by chad_davis on 2008-08-26 18:15:46 as along with 1 person bicko
	Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles. [My Copy] Journal of molecular biology, Vol. 248, No. 2. (28 April 1995), pp. 478-486. by G. Schreiber, A. R. Fersht posted to chemistry classic complexes experimental proj_interprets structure binding by chad_davis on 2008-08-08 17:25:37 as along with 1 person bicko
	Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins. [My Copy] Journal of molecular biology (7 June 2008) by Qifang Xu, Adrian A. A. Canutescu, Guoli Wang, Maxim Shapovalov, Zoran Obradovic, Roland L. L. Dunbrack posted to complexes database data_integration evolution proj_interprets structure validation binding by chad_davis on 2008-07-06 20:22:42 as along with 4 people robfsouza svozil kintoki bicko
	Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Juliette Martin, Leslie Regad, Catherine Etchebest, Anne C. Camproux posted to algorithm complexes feature_selection proj_assembly proj_interprets statistics structure binding by chad_davis on 2008-06-15 13:54:46 as
	An assessment of the uses of homologous interactions [My Copy] Bioinformatics, Vol. 24, No. 5. (1 November 2008), pp. 689-695. by Ramazan Saeed, Charlotte Deane posted to database evolution modelling proj_interprets by chad_davis on 2008-02-29 14:53:57 as along with 11 people snow_dragon carlk lawraga winterschlaefer grahamc cjeans laughcry mingzhi cdeane Pao-Yang samesense
	An iterative knowledge-based scoring function for protein-protein recognition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Sheng Y. Huang, Xiaoqin Zou posted to algorithm binding docking proj_interprets statistics structure by chad_davis on 2008-02-05 09:54:41 as along with 1 person and 2 groups whitead Jiang Research Group structural_bioinformatics
	Statistical analysis of domains in interacting protein pairs [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 993-1001. by Nye, Berzuini Carlo, Gilks, Babu M. Madan, Teichmann posted to binding proj_interprets statistics structure by chad_davis on 2005-12-08 12:55:29 as along with 5 people and 1 group lfriedl wnpx neils iris_2001 phoenixzxl kdl

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structure	37
binding	33
proj_assembly	32
ppi	28
algorithm	26
complexes	17
database	15
evolution	14
statistics	12
validation	11
networks	7
service	7
classic	6
data_integration	6
docking	6
download	5
modelling	5
review	5
alignment	4
annotation	4
clustering	4
embl	4
feature_selection	4
non-redundant	4
web_service	4
chemistry	2
experimental	2

Tag proj_interprets [27 articles] Export

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