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	Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): implications regarding the origin of photosynthesis. [My Copy] Molecular microbiology, Vol. 32, No. 5. (June 1999), pp. 893-906. by R. S. Gupta, T. Mukhtar, B. Singh posted to relationships proteobacteria prokaryotes photosynthetic photosynthesis heliobacterium evolutionary cyanobacteria chloroflexus chlorobium by Winzer on 2009-10-23 11:27:33 as
	Different gene regulation strategies revealed by analysis of binding motifs [My Copy] Trends in Genetics, Vol. 25, No. 10. (06 October 2009), pp. 434-440. by Zeba Wunderlich, Leonid A. Mirny posted to systems-biology regulation prokaryotes networks eukaryotes dna binding-motifs by behindtherabbit on 2009-10-08 16:16:38 as along with 2 people and 1 group francemirko djkt iSEEM
	The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains [My Copy] Genome Biol, Vol. 7, No. 7. (19 Jul 2006), R60. by Lakshminarayan Iyer, A. Maxwell Burroughs, L. Aravind posted to ubiquitin protein prokaryotes inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:43:56 as
	IHF and HU: flexible architects of bent DNA [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 1. (Feb 2004), pp. 28-35. by K. Swinger posted to virus protein prokaryotes family chromatin by robfsouza on 2009-09-11 18:04:51 as
	Evidence for an early prokaryotic endosymbiosis. [My Copy] Nature, Vol. 460, No. 7258. (20 Aug 2009), pp. 967-971. by James A. Lake posted to prokaryotes origin hypothesis evolution endosymbiosis by robfsouza on 2009-08-31 19:57:57 as along with 5 people and 1 group cmzmasek cambray neils behindtherabbit djkt iSEEM
	Genome-wide transcription map of an archaeal cell cycle [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 8. (20 Feb 2007), pp. 2939-2944. by Magnus Lundgren, Rolf Bernander posted to transcription scale replication regulation prokaryotes mitosis microarrays large dataset chromosome archaea by robfsouza on 2009-08-12 21:33:24 as
	The structural role of the zinc ion can be dispensable in prokaryotic zinc-finger domains [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 17. (28 Apr 2009), pp. 6933-6938. by Ilaria Baglivo, Luigi Russo, Sabrina Esposito, et al.Gaetano Malgieri, Mario Renda, Antonio Salluzzo, Benedetto D. Blasio, Carla Isernia, Roberto Fattorusso, Paolo V. Pedone posted to domain evolution gene horizontal prokaryotes protein transfer zinc-finger by robfsouza on 2009-08-05 17:20:20 as
	Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination [My Copy] Biology Direct, Vol. 3, No. 1. (03 Nov 2008), 45. by Lakshminarayan Iyer, A. M. Burroughs, L. Aravind posted to ubiquitination ubiquitin pupylation protein prokaryotes evolution aravind by robfsouza on 2009-08-05 17:08:47 as along with 1 person chemnerd1
	Did DNA replication evolve twice independently? [My Copy] Nucl. Acids Res., Vol. 27, No. 17. (1 Sep 1999), pp. 3389-3401. by D. D. Leipe, L. Aravind, E. V. Koonin posted to replication prokaryotes polymerase origin inactive evolution eukaryote enzyme dna aravind by robfsouza on 2009-07-21 00:43:49 as along with 1 person venancio
	Search for a 'Tree of Life' in the thicket of the phylogenetic forest. [My Copy] Journal of biology, Vol. 8, No. 6. (2009), 59. by Pere Puigbò, Yuri I. Wolf, Eugene V. Koonin posted to evolution hgt phylogeny prokaryotes by behindtherabbit on 2009-07-16 17:48:04 as along with 6 people michaelbarton livingthingdan pablocarb druvus barriot kiekyon
	Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13950-13955. by Hervé Tettelin, Vega Masignani, Michael J. Cieslewicz, et al.Claudio Donati, Duccio Medini, Naomi L. Ward, Samuel V. Angiuoli, Jonathan Crabtree, Amanda L. Jones, A. Scott Durkin, Robert T. Deboy, Tanja M. Davidsen, Marirosa Mora, Maria Scarselli, Immaculada Margarit y Ros, Jeremy D. Peterson, Christopher R. Hauser, Jaideep P. Sundaram, William C. Nelson, Ramana Madupu, Lauren M. Brinkac, Robert J. Dodson, Mary J. Rosovitz, Steven A. Sullivan, Sean C. Daugherty, Daniel H. Haft, Jeremy Selengut, Michelle L. Gwinn, Liwei Zhou, Nikhat Zafar, Hoda Khouri, Diana Radune, George Dimitrov, Kisha Watkins, Kevin J. O'Connor, Shannon Smith, Teresa R. Utterback, Owen White, Craig E. Rubens, Guido Grandi, Lawrence C. Madoff, Dennis L. Kasper, John L. Telford, Michael R. Wessels, Rino Rappuoli, Claire M. Fraser posted to comparative core genome genomics hgt pangenome population prokaryotes by sharpton to the group iSEEM on 2009-07-14 20:00:07 as along with 5 people and 1 group michaelbarton nyyu azazello druvus AaronDarling BartonLab
	Antibiotics in Nature: Beyond Biological Warfare [My Copy] Science, Vol. 324, No. 5935. (26 June 2009), pp. 1637-1639. by Christine Mlot posted to antibiotics biofilm communication messenger metabolites microbes novelty prokaryotes secondary by sharpton on 2009-07-01 18:28:44 as along with 2 people cambray paulschlesinger
	How the Microbial World Saved Evolution from the Scylla of Molecular Biology and the Charybdis of the Modern Synthesis [My Copy] Microbiol. Mol. Biol. Rev., Vol. 73, No. 1. (1 March 2009), pp. 14-21. by Carl R. Woese, Nigel Goldenfeld posted to bacteria evolution microbial phylogeny prokaryotes trees by Winzer on 2009-06-29 11:05:35 as along with 1 person danilov
	Average Gene Length Is Highly Conserved in Prokaryotes and Eukaryotes and Diverges Only Between the Two Kingdoms [My Copy] Mol Biol Evol, Vol. 23, No. 6. (1 Jun 2006), pp. 1107-1108. by Lin Xu, Hong Chen, Xiaohua Hu, Rongmei Zhang, Ze Zhang, Z. W. Luo posted to indel eukaryote complexity gene length low prokaryotes protein sequence by robfsouza on 2009-06-17 20:28:20 as along with 1 person jjray
	Occurrence and structure-function relationship of pentameric short sequence repeats in microbial genomes [My Copy] Research in Microbiology, Vol. 150, No. 9-10. (Nov 1999), pp. 617-626. by A. Vanbelkum posted to indel homopeptide complexity length low prokaryotes recombination repeats sequence by robfsouza on 2009-06-17 17:11:14 as along with 1 person nikkiwithers
	Selection on the genic location of disruptive elements [My Copy] Trends in Genetics, Vol. 23, No. 12. (Dec 2007), pp. 601-604. by M. Vanpassel, H. Ochman posted to indel homopeptide complexity evolution length low prokaryotes protein repeats sequence by robfsouza on 2009-06-17 16:52:05 as
	Evolution of Exceptionally Large Genes in Prokaryotes. [My Copy] J Mol Evol (6 Mar 2008) by Min-Chieh C. Kuo, Li-Fang F. Chou, Hwan-You Y. Chang posted to evolution gene length prokaryotes by robfsouza on 2009-05-29 20:53:51 as along with 1 person operon
	EDGAR: A software framework for the comparative analysis of prokaryotic genomes [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 154. by Jochen Blom, Stefan Albaum, Daniel Doppmeier, et al.Alfred Puhler, Frank J. Vorholter, Martha Zakrzewski, Alexander Goesmann posted to genomics prokaryotes software by Thaverkamp on 2009-05-26 07:43:34 as along with 4 people and 1 group nuin druvus operon AlexBateman Journal picks
	On the origin of prokaryotic species. [My Copy] Genome research, Vol. 19, No. 5. (May 2009), pp. 744-756. by W. Ford Doolittle, Olga Zhaxybayeva posted to evolution phylogenetics prokaryotes by Thaverkamp to the group Microbial-Ecology on 2009-05-04 07:44:59 as along with 3 people neils jmeppley inquil
	The Structure and Complexity of a Bacterial Transcriptome [My Copy] J. Bacteriol. (20 March 2009), JB.00122-09. by Karla D. Passalacqua, Anjana Varadarajan, Brian D. Ondov, David T. Okou, Michael E. Zwick, Nicholas H. Bergman posted to anthracis anthrax bacillus bacteria gene-expression genomics prokaryotes regulation transcription transcriptome by behindtherabbit on 2009-04-02 20:21:14 as along with 1 person carlitosnieto
	Lineages of acidophilic archaea revealed by community genomic analysis. [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1933-1935. by B. J. Baker, G. W. Tyson, R. I. Webb, et al.J. Flanagan, P. Hugenholtz, E. E. Allen, J. F. Banfield posted to ecology evolution genomics metagenomics novelty prokaryotes by sharpton on 2009-02-06 19:43:49 as along with 3 people skembel tkandell theseuskf
	Genome dynamics in a natural archaeal population [My Copy] PNAS, Vol. 104, No. 6. (6 February 2007), pp. 1883-1888. by Eric E. Allen, Gene W. Tyson, Rachel J. Whitaker, John C. Detter, Paul M. Richardson, Jillian F. Banfield posted to ecology evolution genomics metagenomics population prokaryotes by sharpton on 2009-02-06 19:39:51 as along with 4 people and 1 group AaronDarling azazello jmeppley kinestetika microbiology_nijmegen
	Genetic exchange across a species boundary in the archaeal genus ferroplasma. [My Copy] Genetics, Vol. 177, No. 1. (September 2007), pp. 407-416. by J. M. Eppley, G. W. Tyson, W. M. Getz, J. F. Banfield posted to ecology evolution metagenomics prokaryotes speciation by sharpton on 2009-02-06 19:37:08 as along with 3 people AaronDarling azazello jmeppley
	A Genomic Perspective on Protein Families [My Copy] Science, Vol. 278, No. 5338. (24 October 1997), pp. 631-637. by Roman L. Tatusov, Eugene V. Koonin, David J. Lipman posted to classification clustering cog homology orthology prokaryotes by cgaugain on 2009-01-26 13:46:38 as along with 4 people aceol calderonv arve tfogal
	The COG database: an updated version includes eukaryotes [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (11 September 2003), 41. by Roman Tatusov, Natalie Fedorova, John Jackson, et al.Aviva Jacobs, Boris Kiryutin, Eugene Koonin, Dmitri Krylov, Raja Mazumder, Sergei Mekhedov, Anastasia Nikolskaya, B. Sridhar Rao, Sergei Smirnov, Alexander Sverdlov, Sona Vasudevan, Yuri Wolf, Jodie Yin, Darren Natale posted to classification clustering cog eukaryotes homology orthology prokaryotes by cgaugain on 2009-01-26 13:44:57 as along with 14 people and 2 groups aceol sjcockell thegoose2 coela guhjy tharris dmp arve indigoviolet j3xucite treangen bluto westoll natstreet C. elegans / WormBase EisenLab
	The use of gene clusters to infer functional coupling. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 6. (16 March 1999), pp. 2896-2901. by R. Overbeek, M. Fonstein, M. D'Souza, G. D. Pusch, N. Maltsev posted to classification clustering functions genome-context homology orthology prokaryotes by cgaugain on 2009-01-26 11:12:15 as along with 2 people balajis carlk
	Root nodule bacteria isolated from South African Lotononis bainesii, L. listii and L. solitudinis are species of Methylobacterium that are unable to utilize methanol [My Copy] Archives of Microbiology by Julie Ardley, Graham O’hara, Wayne Reeve, et al.Ron Yates, Michael Dilworth, Ravi Tiwari, John Howieson posted to bacteria methanobacteria methanol nodulation prokaryotes symbiosis by behindtherabbit on 2009-01-21 15:06:46 as
	Networking Opportunities for Bacteria [My Copy] Cell, Vol. 135, No. 7. (26 December 2008), pp. 1153-1156. by D. Dwyer, M. Kohanski, J. Collins posted to bacteria biology networks pathogenicity pathway prokaryotes review symbiosis systems by behindtherabbit on 2008-12-27 22:00:55 as
	STRING 8--a global view on proteins and their functional interactions in 630 organisms. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to api database eukaryotes function genomics graph interaction ppi prokaryotes protein string by behindtherabbit to the group Bioinformatics on 2008-12-10 15:59:47 as along with 16 people dfdong carlk mitko ilyashl hagechouchin443 lptolik kshameer allysonlister chad_davis larsjuhljensen druvus guhjy renatomilani grahamc kgutwin biehl
	A portal for rhizobial genomes: RhizoGATE integrates a S. meliloti genome annotation update with postgenome data [My Copy] Journal of Biotechnology (06 December 2008) by A. Becker, M. Barnett, D. Capela, et al.M. Dondrup, P. Krol, B. Linke, S. Ruberg, K. Runte, B. Schroeder, S. Weidner posted to annotation bacteria database emma expression gene genomics microarray mutants nodmutdb prokaryotes proteomics rhizobium symbiosis by behindtherabbit to the group Bioinformatics on 2008-12-08 15:27:05 as
	A functional-phylogenetic classification system for transmembrane solute transporters. [My Copy] Microbiology and molecular biology reviews : MMBR, Vol. 64, No. 2. (June 2000), pp. 354-411. by M. H. Saier posted to classification database eukaryotes prokaryotes transporters by cgaugain on 2008-11-28 11:38:26 as
	Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes. [My Copy] PLoS Comput Biol, Vol. 1, No. 3. (August 2005) by Q. Ren, I. T. Paulsen posted to abc comparison eukaryotes prokaryotes transporters by cgaugain on 2008-11-28 11:29:05 as along with 2 people and 1 group beatrizfernandez viktor21614 Microbial-Ecology
	Structure and mechanism of ABC transporter proteins [My Copy] Current Opinion in Structural Biology In Membranes / Engineering and design, Vol. 17, No. 4. (August 2007), pp. 412-418. by Kaspar Hollenstein, Roger J. P. Dawson, Kaspar P. Locher posted to abc eukaryotes prokaryotes review transporters by cgaugain on 2008-11-26 16:44:52 as along with 3 people Gabriel439 EvaKaltenborn softsimu
	ABC transporters: how small machines do a big job [My Copy] Trends in Microbiology, Vol. 15, No. 10. (October 2007), pp. 448-455. by A. Davidson, P. Maloney posted to abc prokaryotes review transporters by cgaugain on 2008-11-26 16:39:18 as
	Uptake or extrusion: crystal structures of full ABC transporters suggest a common mechanism [My Copy] Molecular Microbiology, Vol. 65, No. 2. (July 2007), pp. 250-257. by Dawson, J. P. Roger, Hollenstein, Kaspar, Locher, P. Kaspar posted to abc prokaryotes review structure transporters by cgaugain on 2008-11-26 16:37:16 as
	ABCdb: an online resource for ABC transporter repertories from sequenced archaeal and bacterial genomes [My Copy] FEMS Microbiology Letters, Vol. 256, No. 2. (2006), pp. 333-339. by Gwennaele Fichant, Marie-Jeanne Basse, Yves Quentin posted to abc database prokaryotes transporters by cgaugain on 2008-11-26 16:33:03 as
	TCDB: the Transporter Classification Database for membrane transport protein analyses and information. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by M. H. Saier, C. V. Tran, R. D. Barabote posted to abc classification database eukaryotes prokaryotes transporters by cgaugain on 2008-11-26 16:25:04 as along with 1 person zlu
	Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes. [My Copy] Computers & chemistry, Vol. 26, No. 5. (July 2002), pp. 447-457. by Y. Quentin, J. Chabalier, G. Fichant posted to abc classification prokaryotes transporters by cgaugain on 2008-11-26 15:28:36 as
	Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks. [My Copy] J Mol Biol, Vol. 360, No. 1. (30 June 2006), pp. 204-212. by S. Balaji, L. M. Iyer, L. Aravind, M. M. Babu posted to gene network prokaryotes regulation scale-free systems transcription yeast by behindtherabbit on 2008-11-22 21:30:53 as along with 4 people aviad_work kaarsinogen mmt koller
	Sensing your surroundings: how transcription-regulatory networks of the cell discern environmental signals. [My Copy] Sci STKE, Vol. 2005, No. 282. (3 May 2005) by G. Balázsi, Z. N. Oltvai posted to interaction network prokaryotes regulation signaling transcription by behindtherabbit on 2008-11-22 20:35:08 as along with 1 person and 1 group nickluscombe EBI-regulation
	Stochastic dynamics of genetic networks: modelling and parameter identification [My Copy] Bioinformatics (9 October 2008), btn527. by Eugenio Cinquemani, Andreas Milias-Argeitis, Sean Summers, John Lygeros posted to continuous expression gene hybrid mathematics model network prokaryotes regulation stochastic by behindtherabbit on 2008-11-21 17:43:32 as along with 2 people kentz phoenixzxl
	New light on an important microbe in the ocean [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 25. (24 June 2008), pp. 8487-8488. by David L. Kirchman posted to marine microbial-ecology prokaryotes proteorhodopsins by jdelcampo on 2008-10-23 20:38:43 as along with 1 person hwright
	Overexpression and characterization of dimeric and tetrameric forms of recombinant serine hydroxymethyltransferase from Bacillus stearothermophilus. [My Copy] Journal of biosciences, Vol. 27, No. 3. (June 2002), pp. 233-242. by V. R. Jala, V. Prakash, N. A. Rao, H. S. Savithri posted to dimer-tetramer-equ shmt prokaryotes by Rayn on 2008-08-07 01:37:22 as
	Serine hydroxymethyltransferase from Escherichia coli: purification and properties. [My Copy] Journal of bacteriology, Vol. 163, No. 1. (July 1985), pp. 1-7. by V. Schirch, S. Hopkins, E. Villar, S. Angelaccio posted to prokaryotes shmt by Rayn on 2008-08-07 00:06:28 as
	Crystal structure at 2.4 A resolution of E. coli serine hydroxymethyltransferase in complex with glycine substrate and 5-formyl tetrahydrofolate. [My Copy] Journal of molecular biology, Vol. 296, No. 1. (11 February 2000), pp. 155-168. by J. N. Scarsdale, S. Radaev, G. Kazanina, V. Schirch, H. T. Wright posted to prokaryotes shmt structure by Rayn on 2008-08-06 23:33:11 as
	Purification and properties of serine hydroxymethyltransferase from Sulfolobus solfataricus [My Copy] J. Bacteriol., Vol. 179, No. 23. (1 December 1997), pp. 7456-7461. by S. Delle Fratte, R. H. White, B. Maras, F. Bossa, V. Schirch posted to prokaryotes shmt by Rayn on 2008-08-06 23:06:52 as
	Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria) [My Copy] Proceedings of the National Academy of Sciences (13 June 2008), 0712027105. by Jose M. González, Beatriz Fernandez-Gomez, Antoni Fernandez-Guerra, et al.Laura Gómez-Consarnau, Olga Sanchez, Montserrat Coll-Lladó, Javier Del Campo, Lorena Escudero, Raquel Rodríguez-Martínez, Laura Alonso-Saez, Mikel Latasa, Ian Paulsen, Olga Nedashkovskaya, Itziar Lekunberri, Jarone Pinhassi, Carlos Pedrós-Alió posted to genomics prokaryotes proteorhodopsins by jdelcampo on 2008-06-26 08:29:47 as along with 1 person Olaf_Ilzins
	MICROBIOLOGY: A Fifth Pathway of Carbon Fixation [My Copy] Science, Vol. 318, No. 5857. (14 December 2007), pp. 1732-1733. by Rudolf K. Thauer posted to microbial-ecology prokaryotes by jdelcampo to the group Microbial-Ecology on 2008-05-22 16:07:17 as along with 3 people and 1 group Winzer kinestetika marpin microbiology_nijmegen
	Think big giant genes in bacteria [My Copy] Environmental Microbiology, Vol. 10, No. 3. (March 2008), pp. 768-777. by Reva, Oleg, Tummler, Burkhard posted to genomics prokaryotes by jdelcampo on 2008-05-22 15:57:48 as along with 1 person gandrian
	Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. [My Copy] J. Bacteriol., Vol. 170, No. 2. (1 February 1988), pp. 720-726. by S. J. Giovannoni, E. F. Delong, G. J. Olsen, N. R. Pace posted to fish prokaryotes by jdelcampo on 2008-05-22 12:39:18 as

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