Tag protein-design [58 articles] Export Sort

Recent papers classified by the tag protein-design.

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	Biophysical techniques for ligand screening and drug design. [My Copy] Current opinion in pharmacology (4 July 2009) by Jean-Paul P. Renaud, Marc-André A. Delsuc posted to protein_structure protein_sequence protein_regions protein-design peptides peptide-binding peptide modelling biophysics by niallhaslam on 2009-09-22 09:50:29 as along with 1 person ubcg08l
	Design of a novel globular protein fold with atomic-level accuracy. [My Copy] Science, Vol. 302, No. 5649. (21 November 2003), pp. 1364-1368. by Brian Kuhlman, Gautam Dantas, Gregory C. Ireton, Gabriele Varani, Barry L. Stoddard, David Baker posted to rosetta protein-design by bmduggan on 2009-09-08 19:47:37 as along with 10 people kgutwin Diego_Prada onufriev apaydin dfgreen jwm hmk heymiki kevinchannon ca3295
	Genetically Designed Peptide-Based Molecular Materials [My Copy] ACS Nano, Vol. 3, No. 7. (28 July 2009), pp. 1606-1615. by Candan Tamerler, Mehmet Sarikaya posted to enzymes inorganic-chemistry molecular-recognition protein-design protein-engineering review surfaces synthetic-biology by kevinchannon on 2009-08-03 16:52:23 as along with 1 person armaquim7
	Design of therapeutic proteins with enhanced stability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 29. (21 July 2009), pp. 11937-11942. by Naresh Chennamsetty, Vladimir Voynov, Veysel Kayser, Bernhard Helk, Bernhardt L. Trout posted to protein-design by marti on 2009-07-15 15:46:13 as along with 5 people guhjy biomcgary phoenixzxl edws zwang
	Ultra-Fast Evaluation of Protein Energies Directly from Sequence [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006), e63. by Gevorg Grigoryan, Fei Zhou, Steve R. Lustig, Gerbrand Ceder, Dane Morgan, Amy E. Keating posted to mathematics peptide-design peptide-interactions peptides protein-design protein-folding self-assembly software by kevinchannon on 2009-07-02 16:31:04 as along with 3 people carlk wouterboomsma chgjb
	Biological Containers: Protein Cages as Multifunctional Nanoplatforms [My Copy] Advanced Materials, Vol. 19, No. 8. (2007), pp. 1025-1042. by M. Uchida, M. . T. Klem, M. Allen, et al.P. Suci, M. Flenniken, E. Gillitzer, Z. Varpness, L. . O. Liepold, M. Young, T. Douglas posted to inorganic-chemistry mineralisation protein-design protein-engineering virus by kevinchannon on 2009-05-22 16:35:59 as
	De novo design of a monomeric three-stranded antiparallel beta-sheet. [My Copy] Protein science : a publication of the Protein Society, Vol. 8, No. 4. (April 1999), pp. 854-865. by E. de Alba, J. Santoro, M. Rico, M. A. Jiménez posted to beta3s experimental protein-design by chiufanlee on 2009-02-09 18:51:55 as
	Epitope mapping of antibodies using bacterial surface display [My Copy] Nature Methods, Vol. 5, No. 12. (23 November 2008), pp. 1039-1045. by Johan Rockberg, John Löfblom, Barbara Hjelm, Mathias Uhl￩n, Stefan Ståhl posted to affinity affinity-proteomics antibodies antibody antibody-array epitope epitope-selection protein protein-array protein-design protein-protein proteomics uhlen by niallhaslam on 2008-12-09 15:06:24 as along with 3 people pineapple guhjy Yanno
	ENPDA: an evolutionary structure-based de novo peptide design algorithm [My Copy] Journal of Computer-Aided Molecular Design, Vol. 19, No. 8. (August 2005), pp. 585-601. by Ignasi Belda, Sergio Madurga, Xavier Llora, et al.Marc Martinell, Teresa Tarrago, Mireia Piqueras, Ernesto Nicolas, Ernest Giralt posted to bioinformatics edas optimization protein protein-design by rsantana on 2008-12-05 12:16:43 as along with 1 person peprovy
	MolDock: A New Technique for High-Accuracy Molecular Docking. [My Copy] J Med Chem, Vol. 49, No. 11. (1 June 2006), pp. 3315-3321. by R. Thomsen, M. H. Christensen posted to bioinformatics fitness optimization protein protein-design by rsantana on 2008-12-05 11:19:01 as along with 3 people and 1 group oteri BragilMassoud yongzhao TSRI_MGL
	The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion. [My Copy] Journal of the American Chemical Society, Vol. 130, No. 44. (5 November 2008), pp. 14370-14371. by K. Makabe, S. Koide posted to protein-design 0_struct_and_design by markchen on 2008-11-02 09:03:27 as
	Optimal Design of Thermally Stable Proteins [My Copy] Bioinformatics (22 August 2008), btn450. by Vanitha Suresh, Ryan M. Bannen, George N. Phillips, Stephen J. Wright, Julie C. Mitchell posted to protein-design by friendpine on 2008-10-07 02:13:16 as along with 2 people phoenixzxl zwang
	Designed metal-binding sites in biomolecular and bioinorganic interactions [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Jacqueline M. Matthews, Fionna E. Loughlin, Joel P. Mackay posted to protein-design by dsekaran on 2008-09-10 01:41:25 as along with 2 people mschofie viktor21614
	Protein folding and design: from simple models to complex systems [My Copy] Current Opinion in Structural Biology In Membranes / Engineering and design, Vol. 18, No. 4. (August 2008), pp. 475-476. by Lynne Regan, Derek N. Woolfson posted to protein-design by dsekaran on 2008-09-10 01:36:05 as
	The Role of a Priori Information in the Minimization of Contact Potentials by Means of Estimation of Distribution Algorithms [My Copy] Evolutionary Computation,Machine Learning and Data Mining in Bioinformatics (2007), pp. 247-257. by Roberto Santana, Pedro Larrañaga, Jose Lozano posted to edas interactions protein protein-design tree by rsantana on 2008-08-30 20:04:53 as
	Photo-cross-linked small-molecule affinity matrix for facilitating forward and reverse chemical genetics. [My Copy] Angewandte Chemie (International ed. in English), Vol. 44, No. 23. (6 June 2005), pp. 3559-3562. by N. Kanoh, K. Honda, S. Simizu, M. Muroi, H. Osada posted to protein-analysis protein-design protein-labeling by robert on 2008-08-06 14:19:34 as
	A beta alpha-barrel built by the combination of fragments from different folds. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 29. (22 July 2008), pp. 9942-9947. by T. A. Bharat, S. Eisenbeis, K. Zeth, B. Höcker posted to off-topic protein-design protein-folding protein-structure by melting on 2008-07-29 20:18:22 as along with 1 person martainn
	Affinity maturation of antibodies assisted by in silico modeling [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 9029-9034. by Rodrigo Barderas, Johan Desmet, Peter Timmerman, Rob Meloen, Ignacio J. Casal posted to affinity affinity-proteomics protein protein-design by niallhaslam on 2008-07-02 10:14:24 as along with 1 person pineapple
	Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (25 October 2006), 474. by Oleksiy Kohany, Andrew Gentles, Lukasz Hankus, Jerzy Jurka posted to censor masking protein-design repeats repeat-structure by niallhaslam on 2008-06-26 15:47:14 as along with 5 people operon natstreet orzenil yoanjacquemin timflutre
	PURE: a webserver for the prediction of domains in unassigned regions in proteins [My Copy] BMC Bioinformatics, Vol. 9 (14 June 2008), 281. by Chilamakuri C. S. Reddy, Shameer Khader, Bernard O. Offmann, Ramanthan Sowdhamini posted to domains modular-architecture protein-design structure-prediction by niallhaslam on 2008-06-25 09:19:12 as along with 1 person neils
	TOPDOM: database of domains and motifs with conservative location in transmembrane proteins. [My Copy] Bioinformatics (Oxford, England) (23 April 2008) by Gábor E E. Tusnády, Lajos Kalmár, Hédi Hegyi, Péter Tompa, István Simon posted to disorder domains modular-architecture protein-design structure-prediction by niallhaslam on 2008-06-25 09:09:42 as along with 3 people cabbagesofdoom gulkur guhjy
	Engineering novel metalloproteins: design of metal-binding sites into native protein scaffolds. [My Copy] Chemical reviews, Vol. 101, No. 10. (October 2001), pp. 3047-3080. by Y. Lu, S. M. Berry, T. D. Pfister posted to biometal enzyme protein-design by robert on 2008-06-02 16:38:34 as
	De Novo Design of Strand-Swapped β-Hairpin Hydrogels [My Copy] Journal of the American Chemical Society, Vol. 130, No. 13. (1 April 2008), pp. 4466-4474. by Radhika P. Nagarkar, Rohan A. Hule, Darrin J. Pochan, Joel P. Schneider posted to protein-design protein-engineering protein-folding proteins by kevinchannon on 2008-03-14 15:25:16 as along with 1 person bethbromley
	Comprehensive identification of human bZIP interactions with coiled-coil arrays. [My Copy] Science, Vol. 300, No. 5628. (27 June 2003), pp. 2097-2101. by J. R. Newman, A. E. Keating posted to protein-design protein-structure by kevinchannon on 2008-03-14 15:04:36 as along with 1 person hplatero
	Stability of 100 homo and heterotypic coiled-coil a-a' pairs for ten amino acids (A, L, I, V, N, K, S, T, E, and R). [My Copy] Biochemistry, Vol. 45, No. 38. (26 September 2006), pp. 11324-11332. by A. Acharya, V. Rishi, C. Vinson posted to protein-design proteins by kevinchannon on 2008-03-14 15:01:11 as along with 6 people kgutwin gwenknight chgjb bethbromley ca3295 hmk
	A designed system for assessing how sequence affects alpha to beta conformational transitions in proteins. [My Copy] J Biol Chem, Vol. 277, No. 12. (22 March 2002), pp. 10150-10155. by B. Ciani, E. G. Hutchinson, R. B. Sessions, D. N. Woolfson posted to protein-design protein-folding rational-design proteins by kevinchannon on 2008-03-14 11:38:38 as along with 2 people bethbromley ca3295
	ZiCo: a peptide designed to switch folded state upon binding zinc. [My Copy] J Am Chem Soc, Vol. 127, No. 43. (2 November 2005), pp. 15008-15009. by E. Cerasoli, B. K. Sharpe, D. N. Woolfson posted to protein-design protein-folding protein-structure rational-design proteins by kevinchannon on 2008-03-14 11:33:31 as along with 3 people patrickking bethbromley ca3295
	Design of protein conformational switches. [My Copy] Curr Opin Struct Biol, Vol. 16, No. 4. (August 2006), pp. 525-530. by X. I. Ambroggio, B. Kuhlman posted to protein-design protein-engineering protein-folding protein-structure rational-design review proteins by kevinchannon on 2008-03-14 11:30:16 as along with 4 people jwm rabio bethbromley marck
	Computational Design of a Single Amino Acid Sequence that Can Switch between Two Distinct Protein Folds. [My Copy] J Am Chem Soc, Vol. 128, No. 4. (1 February 2006), pp. 1154-1161. by X. I. Ambroggio, B. Kuhlman posted to protein-design protein-folding protein-structure rational-design proteins by kevinchannon on 2008-03-14 11:29:17 as along with 5 people and 2 groups barry shuns jwm bethbromley ca3295 structural_bioinformatics Bioinformatics
	De novo protein design: fully automated sequence selection. [My Copy] Science, Vol. 278, No. 5335. (3 October 1997), pp. 82-87. by B. I. Dahiyat, S. L. Mayo posted to protein-design protein-engineering protein-folding rational-design proteins by kevinchannon on 2008-03-13 17:44:20 as along with 4 people Lombardo_7 dfgreen jwm medic0747
	Template-based coiled-coil antigens elicit neutralizing antibodies to the SARS-coronavirus. [My Copy] J Struct Biol, Vol. 155, No. 2. (August 2006), pp. 176-194. by B. Tripet, D. J. Kao, S. A. Jeffers, K. V. Holmes, R. S. Hodges posted to coiled-coil protein-design by chgjb on 2008-02-06 15:37:16 as
	Semirational design of Jun-Fos coiled coils with increased affinity: Universal implications for leucine zipper prediction and design. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 24. (13 June 2006), pp. 8989-8994. by J. M. Mason, M. A. Schmitz, K. M. Müller, K. M. Arndt posted to fos-jun protein-design by chgjb on 2008-02-06 15:18:19 as along with 4 people kgutwin gwenknight bethbromley ca3295
	Positive aspects of negative design: simultaneous selection of specificity and interaction stability. [My Copy] Biochemistry, Vol. 46, No. 16. (24 April 2007), pp. 4804-4814. by J. M. Mason, K. M. Müller, K. M. Arndt posted to fos-jun protein-design by chgjb on 2008-02-06 15:17:31 as
	Crystal structure of a designed, thermostable, heterotrimeric coiled coil. [My Copy] Protein Sci, Vol. 8, No. 1. (January 1999), pp. 84-90. by S. Nautiyal, T. Alber posted to protein-design by chgjb on 2008-02-06 15:16:29 as
	Comparison of in vivo selection and rational design of heterodimeric coiled coils. [My Copy] Structure, Vol. 10, No. 9. (September 2002), pp. 1235-1248. by K. M. Arndt, J. N. Pelletier, K. M. Müller, A. Plückthun, T. Alber posted to protein-design by chgjb on 2008-02-06 15:14:29 as along with 1 person gwenknight
	Structure of a designed, right-handed coiled-coil tetramer containing all biological amino acids [My Copy] Protein Sci, Vol. 16, No. 10. (1 October 2007), pp. 2224-2232. by Mark Sales, Joseph J. Plecs, James M. Holton, Tom Alber posted to protein-design by chgjb on 2008-02-06 15:13:19 as along with 1 person jwm
	Sequence-based design of a peptide probe for the APC tumor suppressor protein. [My Copy] Curr Biol, Vol. 8, No. 14. (2 July 1998), pp. 823-830. by V. A. Sharma, J. Logan, D. S. King, R. White, T. Alber posted to protein-design by chgjb on 2008-02-06 15:11:56 as
	Peptide and Protein Building Blocks for Synthetic Biology: From Programming Biomolecules to Self-Organized Biomolecular Systems [My Copy] ACS Chemical Biology, Vol. 3, No. 1. (1 January 2008), pp. 38-50. by Elizabeth H. C. Bromley, Kevin Channon, Efrosini Moutevelis, Derek N. Woolfson posted to encapsulation protein-design synthetic-biology by kevinchannon on 2008-02-06 10:48:18 as along with 7 people jwm patrickking markchen bethbromley ca3295 chdnw austin
	Computational Design of Peptides That Target Transmembrane Helices [My Copy] Science, Vol. 315, No. 5820. (30 March 2007), pp. 1817-1822. by Hang Yin, Joanna S. Slusky, Bryan W. Berger, et al.Robin S. Walters, Gaston Vilaire, Rustem I. Litvinov, James D. Lear, Gregory A. Caputo, Joel S. Bennett, William F. Degrado posted to membrane-protein protein-design by chgjb on 2008-01-14 09:23:34 as along with 7 people jjurban paulschlesinger hc5428 chad_davis zwang xxh0541 Evangelia
	De novo design of the hydrophobic cores of proteins. [My Copy] Protein Sci, Vol. 4, No. 10. (October 1995), pp. 2006-2018. by J. R. Desjarlais, T. M. Handel posted to hydrophobic-core protein-design by chgjb on 2008-01-14 09:21:13 as along with 3 people and 1 group oteri dfgreen ashaytan Structural Biology Group TorVergata
	Design, expression, and stability of a diverse protein library based on the human fibronectin type III domain [My Copy] Protein Sci, Vol. 16, No. 3. (1 March 2007), pp. 476-484. by Anders C. Olson, Richard W. Roberts posted to binder protein-design protein-protein by niallhaslam on 2007-11-20 11:12:08 as along with 1 person wilbur
	Polypeptide Conjugate Binders for Protein Recognition [My Copy] Creative Chemical Sensor Systems (2007), pp. 89-106. by Lars Baltzer posted to binder proein-binder protein-design protein-protein by niallhaslam on 2007-11-20 11:08:59 as
	Design of Ligand Binding to an Engineered Protein Cavity Using Virtual Screening and Thermal Up-shift Evaluation [My Copy] Journal of Computer-Aided Molecular Design, Vol. 19, No. 6. (June 2005), pp. 421-443. by Claudia Machicado, Jon Lopez-Llano, Santiago Cuesta-Lopez, Marta Bueno, Javier Sancho posted to ligand-binding protein-design protein-protein reverse-docking by niallhaslam on 2007-11-20 11:00:28 as
	Design of multi-specificity in protein interfaces. [My Copy] PLoS computational biology, Vol. 3, No. 8. (1 August 2007), e164. by Elisabeth L. Humphris, Tanja Kortemme posted to ppi-evolution promiscuous-ppis protein-design by bicko on 2007-09-18 14:12:51 as along with 9 people and 3 groups bmduggan allmensch msuarezdiez jwm Einat dpollard Scis0000002 phoenixzxl marck structural_bioinformatics Bioinformatics EisenLab
	A simple physical model for binding energy hot spots in proteinâprotein complexes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121. by Tanja Kortemme, David Baker posted to interface-properties ppi-experimental-methods protein-design by bicko on 2007-05-18 14:27:27 as along with 8 people and 1 group chemrahul82 onufriev oceanwind lna jwm cjeans hmk skoddet Nielsen group
	Computational redesign of protein-protein interaction specificity [My Copy] Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 371-379. by Tanja Kortemme, Lukasz A. Joachimiak, Alex N. Bullock, Aaron D. Schuler, Barry L. Stoddard, David Baker posted to protein-design by bicko on 2007-05-18 14:26:08 as along with 7 people bmduggan lna jwm ruvido cjeans tale jteyra
	Computational design of protein-protein interactions. [My Copy] Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 91-97. by Tanja Kortemme, David Baker posted to interface-properties protein-design by bicko on 2007-05-18 14:20:36 as along with 7 people bmduggan qluo lna jwm hmk cjeans jteyra
	Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface. [My Copy] J Mol Biol, Vol. 361, No. 1. (4 August 2006), pp. 195-208. by L. A. Joachimiak, T. Kortemme, B. L. Stoddard, D. Baker posted to interface-properties protein-design by bicko on 2007-05-18 14:20:04 as along with 2 people lna jwm
	Exact rotamer optimization for protein design. [My Copy] J Comput Chem, Vol. 24, No. 2. (30 January 2003), pp. 232-243. by D. B. Gordon, G. K. Hom, S. L. Mayo, N. A. Pierce posted to protein-design rotamers by rsantana on 2007-02-09 19:39:44 as along with 1 person bluvsh1
	The Discretizable Molecular Distance Geometry Problem [My Copy] (5 Aug 2006) by Carlile Lavor, Leo Liberti, Nelson Maculan posted to protein-design protein by rsantana on 2007-02-06 19:23:33 as

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protein	14
proteins	12
protein-folding	9
protein-engineering	6
rational-design	6
protein-sequence-design	5
protein-structure	5
cap3	4
protein-protein	4
bioinformatics	3
interface-properties	3
peptides	3
synthetic-biology	3
affinity	2
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inorganic-chemistry	2
ligand-binding	2
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beta3s	1
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biophysics	1
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coiled-coil	1
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epitope-selection	1
experimental	1
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folding	1
hydrophobic-core	1
interactions	1
masking	1
mathematics	1
membrane-protein	1
mineralisation	1
modelling	1
molecular-recognition	1
monte-carlo	1
off-topic	1
peptide	1
peptide-binding	1
peptide-design	1
peptide-interactions	1
ppi-evolution	1
ppi-experimental-methods	1
proein-binder	1
promiscuous-ppis	1
protein-analysis	1
protein-array	1
protein-ensemble	1
protein-labeling	1
protein_regions	1
protein_sequence	1
protein_structure	1
proteomics	1
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repeats	1
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