Tag protein-dynamics [34 articles] Export Sort

Recent papers classified by the tag protein-dynamics.

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	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to protein-dynamics by skywalkerus02 on 2009-12-05 08:54:07 as along with 22 people and 3 groups paulymer dfdong tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k barry pablocarb ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger structural_bioinformatics McCammon baker-group
	Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (4 September 2009), e1000496. by Timothy R. Lezon, Andrej Sali, Ivet Bahar posted to protein-dynamics enm by abovell on 2009-11-23 17:48:53 as along with 1 person Diego_Prada
	Coarse-graining protein structures with local multivariate features from molecular dynamics. [My Copy] The journal of physical chemistry. B, Vol. 112, No. 44. (6 November 2008), pp. 14026-14035. by Zhiyong Zhang, Willy Wriggers posted to methodology pca protein-dynamics by choonpeng on 2009-07-31 11:19:36 as along with 1 person and 1 group sobolevnrm baker-group
	Control of protein functional dynamics by peptide linkers. [My Copy] Biopolymers, Vol. 80, No. 6. (2005), pp. 736-746. by Willy Wriggers, Sugoto Chakravarty, Patricia A. Jennings posted to protein-domains protein-dynamics by choonpeng on 2009-07-31 09:01:01 as along with 2 people ramalldf dbikard
	Inelastic neutron scattering from damped collective vibrations of macromolecules [My Copy] Chemical Physics, Vol. 261, No. 1-2. (1 November 2000), pp. 1-24. by G. Kneller posted to friction langevin nma protein-dynamics by abovell on 2009-07-10 16:50:43 as along with 1 person apaydin
	Harmonicity in slow protein dynamics [My Copy] Chemical Physics, Vol. 261, No. 1-2. (1 November 2000), pp. 25-37. by K. Hinsen posted to friction nma protein-dynamics by abovell on 2009-07-10 16:46:09 as along with 4 people and 1 group Diego_Prada apaydin sobolevnrm saravan baker-group
	Langevin modes of macromolecules [My Copy] The Journal of Chemical Physics, Vol. 85, No. 12. (1986), pp. 7334-7348. by Gene Lamm, Attila Szabo posted to friction langevin nma protein-dynamics by abovell on 2009-07-10 16:40:21 as along with 1 person apaydin
	Investigating protein dynamics in collective coordinate space [My Copy] Current Opinion in Structural Biology, Vol. 9, No. 2. (April 1999), pp. 164-169. by A. Kitao, N. Go posted to collective-dynamics network-dynamics protein-dynamics proteins proteomic-spaces transformability by Scis0000002 on 2009-07-09 09:34:37 as along with 6 people and 1 group bmduggan ttjoseph ffranca barry choonpeng sobolevnrm baker-group
	Normal mode analysis with simplified models to investigate the global dynamics of biological systems. [My Copy] Protein Pept Lett, Vol. 10, No. 2. (April 2003), pp. 119-132. by F. Tama posted to enm nma protein-dynamics review by abovell on 2009-06-25 16:13:09 as along with 1 person BragilMassoud
	Coarse-graining of protein structures for the normal mode studies [My Copy] Journal of Computational Chemistry, Vol. 28, No. 8. (2007), pp. 1400-1410. by Kilho Eom, Seung-Chul Baek, Jung-Hee Ahn, Sungsoo Na posted to nma protein-dynamics by abovell on 2009-06-15 19:47:11 as along with 2 people aqeel choonpeng
	AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules [My Copy] Computer Physics Communications, Vol. 91, No. 1-3. (02 September 1995), pp. 1-41. by D Pearlman, posted to amber force-field nma protein-dynamics by abovell on 2009-06-15 18:35:41 as along with 3 people rdf papatonyhill gruppo
	Solvent mobility and the protein 'glass' transition. [My Copy] Nat Struct Biol, Vol. 7, No. 1. (January 2000), pp. 34-38. by D. Vitkup, D. Ringe, G. A. Petsko, M. Karplus posted to hydration-layer md protein-dynamics water-dynamics by abovell on 2009-06-04 19:46:28 as along with 4 people saravan naitsabes onufriev jteyra
	Probing the Local Dynamics of Nucleotide-Binding Pocket Coupled to the Global Dynamics: Myosin versus Kinesin [My Copy] Vol. 89, No. 1. (1 July 2005), pp. 167-178. by Wenjun Zheng, Bernard R. Brooks posted to enm hydration-layer protein-dynamics by abovell on 2009-05-28 17:01:59 as
	Normal-Modes-Based Prediction of Protein Conformational Changes Guided by Distance Constraints [My Copy] Vol. 88, No. 5. (1 May 2005), pp. 3109-3117. by Wenjun Zheng, Bernard R. Brooks posted to enm hydration-layer protein-dynamics water-dynamics by abovell on 2009-05-28 16:53:04 as
	Vibrational subsystem analysis: A method for probing free energies and correlations in the harmonic limit. [My Copy] The Journal of chemical physics, Vol. 129, No. 21. (7 December 2008) by H. L. Woodcock, W. Zheng, A. Ghysels, Y. Shao, J. Kong, B. R. Brooks posted to enm hydration-layer nma protein-dynamics water-dynamics by abovell on 2009-05-28 16:07:10 as
	Building alternate protein structures using the elastic network model [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Qingyi Yang, Kim A. Sharp posted to enm protein-dynamics by abovell on 2009-05-26 20:45:08 as along with 5 people and 2 groups pansapiens klexa sobolevnrm oteri middledomain baker-group Structural Biology Group TorVergata
	Protein displacements under external forces: An atomistic Langevin dynamics approach [My Copy] J. Chem. Phys., Vol. 130, No. 8. (February 2009) by D. gnandt, N. utz, A. blumen, T. koslowski posted to enm force protein-dynamics by abovell on 2009-05-26 20:34:27 as
	A unified model of protein dynamics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 13. (31 March 2009), pp. 5129-5134. by Hans Frauenfelder, Guo Chen, Joel Berendzen, et al.Paul W. Fenimore, Helén Jansson, Benjamin H. McMahon, Izabela R. Stroe, Jan Swenson, Robert D. Young posted to dielectric-spectroscopy hydration-layer lab-meeting protein-dynamics by abovell on 2009-05-25 20:00:09 as along with 9 people and 1 group climb0910 paulymer Diego_Prada Christophe jdstevenson amishp sobolevnrm zwang kevinchannon baker-group
	Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis [My Copy] Physical Review Letters, Vol. 77, No. 9. (1996), 1905. by Monique M. Tirion posted to nma protein-dynamics by abovell on 2009-05-25 19:06:23 as along with 4 people and 1 group akraemer joseph_x_zhou aqeel Diego_Prada protein_Dyn
	Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12570-12575. by O. Miyashita, J. N. Onuchic, P. G. Wolynes posted to nma nonlinear-nma protein-dynamics by abovell on 2009-05-25 19:01:13 as along with 3 people and 2 groups kjell aqeel joseph_x_zhou biophysics protein_Dyn
	Simple Energy Landscape Model for the Kinetics of Functional Transitions in Proteins [My Copy] The Journal of Physical Chemistry B, Vol. 109, No. 5. (1 February 2005), pp. 1959-1969. by Osamu Miyashita, Peter G. Wolynes, Jose N. Onuchic posted to nma nonlinear-nma protein-dynamics by abovell on 2009-05-25 18:26:05 as along with 2 people xdeupi aqeel
	Analysis of domain motions by approximate normal mode calculations [My Copy] Proteins: Structure, Function, and Genetics, Vol. 33, No. 3. (9 March 1999), pp. 417-429. by Konrad Hinsen posted to nma protein-dynamics by abovell on 2009-05-25 18:19:46 as along with 5 people and 3 groups BragilMassoud barry shadowman aqeel yongzhao structural_bioinformatics Bioinformatics TSRI_MGL
	How to describe protein motion without amino acid sequence and atomic coordinates. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 13. (25 June 2002), pp. 8620-8625. by D. Ming, Y. Kong, M. A. Lambert, Z. Huang, J. Ma posted to enm nma protein-dynamics by abovell on 2009-05-25 18:08:06 as along with 1 person aqeel
	A comparative study of motor-protein motions by using a simple elastic-network model. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 23. (11 November 2003), pp. 13253-13258. by W. Zheng, S. Doniach posted to enm nma protein-dynamics by abovell on 2009-05-25 18:01:47 as along with 5 people and 2 groups barry aqeel shuns barry2 qwermish structural_bioinformatics Bioinformatics
	Effects of Surface Water on Protein Dynamics Studied by a Novel Coarse-Grained Normal Mode Approach [My Copy] Vol. 94, No. 9. (1 May 2008), pp. 3461-3474. by Lei Zhou, Steven A. Siegelbaum posted to explicit-water hydration-layer nma protein-dynamics water-dynamics by abovell on 2009-05-25 17:46:33 as along with 1 person saravan
	Loop-Tryptophan Human PNP Reveals Submillisecond Protein Dynamics [My Copy] Biochemistry, Vol. 0, No. ja. (0000) by Vern Schramm, Mahmoud Ghanem, Nick Zhadin, Robert Callender posted to protein-dynamics trp by carlosjavierna on 2009-02-26 03:23:26 as
	Probing Protein Conformations by in Situ Non-Covalent Fluorescence Labeling [My Copy] Bioconjugate Chemistry, Vol. 20, No. 1. (21 January 2009), pp. 41-46. by Jennifer J. Strunk, Ingo Gregor, Yvonne Becker, et al.Peter Lamken, Suman Lata, Annett Reichel, Jörg Enderlein, Jacob Piehler posted to fluorescent-tag fluorophore protein-dynamics by melting on 2009-02-05 19:00:42 as along with 2 people and 1 group samjlord alexfuerstenberg moernerlab
	Fluorescent protein tools for studying protein dynamics in living cells: a review [My Copy] Journal of Biomedical Optics, Vol. 13, No. 3. (2008) by Richard N. Day, Fred Schaufele posted to fluorescence live-cell protein protein-dynamics by melting on 2008-09-09 01:24:59 as along with 2 people and 1 group mhamidi samjlord moernerlab
	Hidden structure in protein energy landscapes [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 77, No. 2. (2008) by Dengming Ming, Marian Anghel, Michael E. Wall posted to protein-dynamics protein-energy-landscapes protein-folding by melting on 2008-03-04 17:26:55 as
	A diverse view of protein dynamics from NMR studies of HIV-1 protease flaps [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 70, No. 4. (2008), pp. 1408-1415. by Rieko Ishima, John M. Louis posted to protein-dynamics by choonpeng on 2008-02-19 06:47:43 as
	Conformational substates in different crystal forms of the photoactive yellow protein--correlation with theoretical and experimental flexibility. [My Copy] Protein Sci, Vol. 9, No. 1. (January 2000), pp. 64-72. by D. M. van Aalten, W. Crielaard, K. J. Hellingwerf, L. Joshua-Tor posted to ensemble pca protein-dynamics by choonpeng on 2008-01-13 10:49:07 as
	Denatured proteins and early folding intermediates simulated in a reduced conformational space. [My Copy] Acta Biochim Pol (19 December 2005) by Sebastian Kmiecik, Mateusz Kurcinski, Aleksandra Rutkowska, Dominik Gront, Andrzej Kolinski posted to denatured folding-pathway modeling protein-dynamics protein-folding protein-structure by sekmi on 2007-11-09 14:27:11 as along with 2 people dgront mkurc
	Characterization of protein-folding pathways by reduced-space modeling. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 30. (24 July 2007), pp. 12330-12335. by Sebastian Kmiecik, Andrzej Kolinski posted to denatured folding-pathway protein-dynamics protein-folding protein-structure by sekmi on 2007-11-09 14:08:24 as along with 6 people saunders carlosjavierna mijam wouterboomsma mkurc nh
	Folding pathway of the B1 domain of protein G explored by a multiscale modeling [My Copy] Biophysical Journal, Vol. 94, No. 3. (21 September 2008), pp. 726-736. by Sebastian Kmiecik, Andrzej Kolinski posted to denatured folding-pathway protein-dynamics protein-structure by sekmi on 2007-11-09 14:03:07 as along with 2 people mijam jennifermbui

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