Tag protein-function [66 articles] Export

Recent papers classified by the tag protein-function.

	Predicting Enzyme Class From Protein Structure Without Alignments [My Copy] Journal of Molecular Biology, Vol. 345, No. 1. (07 January 2005), pp. 187-199. by Paul D. Dobson, Andrew J. Doig posted to protein-structure protein-function by MarcoAlvarez on 2009-11-02 19:02:05 as along with 5 people barmak7282 pauldobson baaden eweaver dullhunk
	Hydrogen exchange methods to study protein folding. [My Copy] Methods (San Diego, Calif.), Vol. 34, No. 1. (September 2004), pp. 51-64. by Mallela M. Krishna, Linh Hoang, Yan Lin, S. Walter Englander posted to proteins protein-function protein-folding nmr hydrogen-exchange by kevinchannon on 2009-09-02 09:57:12 as
	Structure-based function prediction: approaches and applications [My Copy] Brief Funct Genomic Proteomic, Vol. 7, No. 4. (1 July 2008), pp. 291-302. by Pier F. Gherardini, Manuela Helmer-Citterich posted to protein-function by MarcoAlvarez on 2009-04-28 07:29:33 as along with 5 people sgoetz flbarroso dgront jameswasmuth pansapiens
	Automated discovery of 3D motifs for protein function annotation [My Copy] Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 723-730. by Benjamin J. Polacco, Patricia C. Babbitt posted to protein-function protein-structure by MarcoAlvarez on 2009-04-23 19:51:04 as along with 3 people and 2 groups marcius eweaver rabio BioinfoCIPF SGU-CIPF
	Automated protein function prediction--the genomic challenge. [My Copy] Briefings in bioinformatics, Vol. 7, No. 3. (23 September 2006), pp. 225-242. by I. Friedberg posted to protein-function by MarcoAlvarez on 2009-04-23 19:41:46 as along with 12 people and 3 groups michaelbarton kiekyon Keywan idoerg shung tjimenez yas marcius j3xucite cdallett sgoetz bootsy T_lab BioinfoCIPF SGU-CIPF
	Computational protein function prediction: Are we making progress? [My Copy] Cell Mol Life Sci (5 July 2007) by A Godzik, M Jambon, I Friedberg posted to protein-function by MarcoAlvarez on 2009-04-23 19:39:11 as along with 7 people kiekyon sgoetz aalibes tjimenez wnpx Jporci nklee
	Fluidic and Air-Stable Supported Lipid Bilayer and Cell-Mimicking Microarrays [My Copy] Journal of the American Chemical Society, Vol. 130, No. 19. (1 May 2008), pp. 6267-6271. by Yang Deng, Yini Wang, Bryan Holtz, et al.Jingyi Li, Nathan Traaseth, Gianluigi Veglia, Benjamin J. Stottrup, Robert Elde, Duanqing Pei, Athena Guo, X. Y. Zhu posted to array drug drug-binding immobilisation lipid-bilayer protein-function protein-structure sar structural-biology transporter uptake by pauldobson on 2009-04-16 09:23:02 as along with 1 person Buntworthy
	Prediction of protein function from protein sequence and structure. [My Copy] Q Rev Biophys, Vol. 36, No. 3. (August 2003), pp. 307-340. by J. C. Whisstock, A. M. Lesk posted to protein-function by MarcoAlvarez on 2009-04-13 19:13:28 as along with 5 people and 1 group wilbur tjimenez tmmurali okarsligil bootsy Bioinformatics
	Sequence and Structural Features of Enzymes and their Active Sites by EC Class [My Copy] Journal of Molecular Biology, Vol. 386, No. 5. (13 March 2009), pp. 1423-1436. by Tracey Bray, Andrew J. Doig, Jim Warwicker posted to protein-function by MarcoAlvarez on 2009-04-13 19:04:22 as along with 3 people barmak7282 nickolay ucbcjbm
	Predicting protein function from sequence and structure [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 12. (01 December 2007), pp. 995-1005. by David Lee, Oliver Redfern, Christine Orengo posted to protein-function by MarcoAlvarez on 2009-04-13 10:08:01 as along with 14 people and 1 group dbikard operon michaelbarton smpraveena skhadar neils cjeans zwang Evangelia hpaces Ema renatomilani kluck janasont MuraLab
	The relationship between protein structure and function: a comprehensive survey with application to the yeast genome. [My Copy] Journal of molecular biology, Vol. 288, No. 1. (23 April 1999), pp. 147-164. by H. Hegyi, M. Gerstein posted to protein-function protein-structure by MarcoAlvarez on 2009-04-13 09:24:11 as along with 5 people and 1 group pablocarb Einat eweaver tny siebertm structural_bioinformatics
	Practical limits of function prediction. [My Copy] Proteins, Vol. 41, No. 1. (1 October 2000), pp. 98-107. by D. Devos, A. Valencia posted to protein-function by MarcoAlvarez on 2009-04-11 00:14:30 as along with 5 people sgoetz shung tjimenez bayesian bootsy
	Overlapping functions of the yeast oxysterol-binding protein homologues. [My Copy] Genetics, Vol. 157, No. 3. (March 2001), pp. 1117-1140. by C. T. Beh, L. Cool, J. Phillips, J. Rine posted to combinations knockouts lipid lipidome metabolism modular-systems modularity multiple-knockouts network protein-function redundancy sbml simulation synergy systems-biology wilko by pauldobson on 2009-03-31 16:13:29 as
	Thematic Review Series: Sphingolipids. ISC1 (inositol phosphosphingolipid-phospholipase C), the yeast homologue of neutral sphingomyelinases [My Copy] J. Lipid Res., Vol. 49, No. 5. (1 May 2008), pp. 922-928. by Nabil Matmati, Yusuf A. Hannun posted to example moonlighting ontology promiscuity protein-function rule rules systems-biology by pauldobson on 2009-03-30 12:53:11 as
	Prediction of new serine proteinase inhibitors. [My Copy] Nat Struct Biol, Vol. 1, No. 10. (October 1994), pp. 735-743. by I. V. Kurinov, R. W. Harrison posted to docking inhibitor protein-function protein-structure simulation trypsin by pauldobson on 2009-03-28 07:14:56 as along with 1 person and 2 groups jwm Radiation_Damage Stressosome
	Trypsin: a case study in the structural determinants of enzyme specificity. [My Copy] Biol Chem, Vol. 377, No. 7-8. (g 1996), pp. 465-470. by L. Hedstrom posted to promiscuity protein-function protein-structure specificity by pauldobson on 2009-03-28 07:14:22 as along with 2 people and 2 groups marcius Nambi BioinfoCIPF SGU-CIPF
	Molecular mechanisms for multitasking: recent crystal structures of moonlighting proteins. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 6. (December 2004), pp. 663-668. by C. J. Jeffery posted to moonlighting protein-function by pauldobson on 2009-03-28 07:12:46 as along with 3 people tny i41m benlin
	Enzymes with extra talents: moonlighting functions and catalytic promiscuity. [My Copy] Curr Opin Chem Biol, Vol. 7, No. 2. (April 2003), pp. 265-272. by S. D. Copley posted to moonlighting protein-function by pauldobson on 2009-03-28 07:12:33 as along with 3 people and 1 group tomhebbron i41m caporaso biomedical-nlp
	Moonlighting proteins: old proteins learning new tricks [My Copy] Trends in Genetics, Vol. 19, No. 8. (August 2003), pp. 415-417. by Constance J. Jeffery posted to moonlighting protein-function by pauldobson on 2009-03-28 07:12:13 as along with 3 people guhjy mloewer benlin
	Genome-wide enzyme annotation with precision control: catalytic families (CatFam) databases. [My Copy] Proteins, Vol. 74, No. 2. (1 February 2009), pp. 449-460. by Chenggang Yu, Nela Zavaljevski, Valmik Desai, Jaques Reifman posted to database enzymes function-prediction protein-annotation protein-function by idoerg on 2009-03-26 04:55:55 as along with 3 people JeremyZucker reyez guhjy
	The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth Johnson, Fred Stevens, Jaques Reifman posted to annotation-pipeline function-prediction high-throughput metagenomics protein-function by idoerg on 2009-03-26 04:14:40 as along with 2 people renatomilani guhjy
	The Protein Feature Ontology: a tool for the unification of protein feature annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2767-2772. by G. A. Reeves, K. Eilbeck, M. Magrane, et al.C. O'Donovan, L. Montecchi-Palazzi, M. A. Harris, S. Orchard, R. C. Jimenez, A. Prlic, T. J. Hubbard, H. Hermjakob, J. M. Thornton posted to ontologies protein-annotation protein-function protein-structure by idoerg on 2009-03-25 16:52:10 as along with 12 people and 2 groups timhubbard TRHvidsten nlapalu fgibson zimbo1 barriot guhjy grahamc chad_davis Zephyrus i000 dullhunk Roswell Cancer Crosstalk MuraLab
	Protein function annotation by homology-based inference [My Copy] Genome Biology, Vol. 10, No. 2. (2009) by Yaniv Loewenstein, Domenico Raimondo, Oliver Redfern, et al.James Watson, Dmitrij Frishman, Michal Linial, Christine Orengo, Janet Thornton, Anna Tramontano posted to function-prediction protein-annotation protein-function by idoerg on 2009-03-25 16:45:37 as along with 3 people Keywan nyyu druvus
	WSsas: a web service for the annotation of functional residues through structural homologues. [My Copy] Bioinformatics (Oxford, England) (27 February 2009) by David Talavera, Roman A A. Laskowski, Janet M M. Thornton posted to function-prediction protein protein-annotation protein-function by idoerg on 2009-03-25 16:44:29 as along with 2 people niallhaslam shwu
	SuperPred: drug classification and target prediction. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by M. Dunkel, S. Günther, J. Ahmed, B. Wittig, R. Preissner posted to binding-site bioinformatics cheminformatics drug drug-binding machine-learning protein protein-function protein-structure by pauldobson on 2009-03-15 23:16:10 as along with 2 people reyez massivemayhem
	Binding MOAD, a high-quality protein-ligand database. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by M. L. Benson, R. D. Smith, N. A. Khazanov, et al.B. Dimcheff, J. Beaver, P. Dresslar, J. Nerothin, H. A. Carlson posted to bioinformatics cheminformatics drug drug-binding ligand-binding protein protein-function protein-structure by pauldobson on 2009-03-15 23:14:42 as along with 6 people medic0747 reyez nickolay massivemayhem higueruelo guhjy
	SuperSite: dictionary of metabolite and drug binding sites in proteins [My Copy] Nucl. Acids Res., Vol. 37 (8 October 2008), pp. 195-200. by Raphael A. Bauer, Stefan Gunther, Dominic Jansen, Carolin Heeger, Paul F. Thaben, Robert Preissner posted to bioinformatics cheminformatics drug drug-binding protein protein-function protein-structure by pauldobson on 2009-03-15 23:12:06 as along with 5 people and 1 group Effie jmuhlich reyez lptolik pengchy NaCTeM
	PocketMatch: A new algorithm to compare binding sites in protein structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 543. by Kalidas Yeturu, Nagasuma Chandra posted to binding-site bioinformatics cheminformatics drug drug-binding enzyme protein protein-function protein-structure by pauldobson on 2009-03-15 23:10:36 as along with 9 people and 1 group cdsouthan nanonan sobolevnrm jteyra kshameer reyez tny higueruelo druvus baker-group
	Is protein classification necessary? Toward alternative approaches to function annotation [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (5 June 2009), pp. 363-368. by Donald Petrey, Barry Honig posted to protein protein-function protein-structure structure by idoerg on 2009-03-14 17:14:38 as along with 8 people and 4 groups dfdong sconlan robfsouza davidalee sobolevnrm janasont fgibson barry Orengo Group Journal Picks baker-group structural_bioinformatics Bioinformatics
	Why proteins evolve at different rates: The functional hypothesis versus the mistranslation-induced protein misfolding hypothesis [My Copy] FEBS Letters, Vol. 583, No. 7. (02 April 2009), pp. 1053-1059. by Donghyun Park, Sun S. Choi posted to bioinformatics evolution molecular-evolution protein-function by idoerg on 2009-03-10 17:20:03 as along with 4 people scampos gjuggler carlosjavierna zwang
	A unified model of protein dynamics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 13. (31 March 2009), pp. 5129-5134. by Hans Frauenfelder, Guo Chen, Joel Berendzen, et al.Paul W. Fenimore, HelÃ©n Jansson, Benjamin H. McMahon, Izabela R. Stroe, Jan Swenson, Robert D. Young posted to biophysics protein-folding protein-function protein-kinetics protein-ligand-binding protein-solubility protein-stability protein-structure proteins by kevinchannon on 2009-03-03 14:31:46 as along with 8 people and 1 group paulymer Diego_Prada Christophe abovell jdstevenson amishp sobolevnrm zwang baker-group
	Universal features in the genome-level evolution of protein domains. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), R12. by Marco Cosentino Lagomarsino, Alessandro L. Sellerio, Philip D. Heijning, Bruno Bassetti posted to evolution protein protein-annotation protein-function by idoerg on 2009-02-27 00:41:24 as along with 7 people docv zwang phoenixzxl djkt VGreiff grahamc pawelszczesny
	Helical Structures of ESCRT-III Are Disassembled by VPS4 [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), pp. 1354-1357. by Suman Lata, Guy Schoehn, Ankur Jain, et al.Ricardo Pires, Jacob Piehler, Heinrich G. Gottlinger, Winfried Weissenhorn posted to amphiphiles lipid membrane-curvature protein-engineering protein-function by kevinchannon on 2009-02-17 11:24:09 as
	Prediction of protein function in the absence of significant sequence similarity. [My Copy] Current medicinal chemistry, Vol. 11, No. 16. (August 2004), pp. 2135-2142. by P. D. Dobson, Y. D. Cai, B. J. Stapley, A. J. Doig posted to enzyme machine-learning protein-function support-vector-machine svm by pauldobson on 2009-02-11 12:49:29 as
	Distinguishing enzyme structures from non-enzymes without alignments. [My Copy] Journal of molecular biology, Vol. 330, No. 4. (18 July 2003), pp. 771-783. by P. D. Dobson, A. J. Doig posted to enzyme machine-learning protein-function svm by pauldobson on 2009-02-11 12:49:06 as
	From Kinase to Cyclase: An Unusual Example of Catalytic Promiscuity Modulated by Metal Switching [My Copy] ChemBioChem, Vol. 10, No. 2. (2009), pp. 225-229. by Israel Sánchez-Moreno, Laura Iturrate, Rocio Martín-Hoyos, et al.María L. Jimeno, Montaña Mena, Agatha Bastida, Eduardo García-Junceda posted to protein protein-function protein-structure structure by idoerg on 2009-02-01 06:13:20 as
	CASTp: Computed Atlas of Surface Topography of proteins [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3352-3355. by Andrew T. Binkowski, Shapor Naghibzadeh, Jie Liang posted to protein-function protein-structure by MarcoAlvarez on 2008-11-20 21:57:29 as along with 1 person tomjad
	Protein function prediction via graph kernels. [My Copy] Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005) by Karsten M. M. Borgwardt, Cheng, Stefan Schönauer, S. V. N. V. Vishwanathan, Alex J. J. Smola, Hans-Peter P. Kriegel posted to graph-kernel protein-function support-vector-machine by MarcoAlvarez on 2008-09-12 07:20:12 as along with 9 people and 4 groups ajbattle tmmurali okarsligil vavi lfriedl marcius eweaver kt wnpx kdl Bioinformatics BioinfoCIPF SGU-CIPF
	Distinguishing Enzyme Structures from Non-enzymes Without Alignments [My Copy] Journal of Molecular Biology, Vol. 330, No. 4. (18 July 2003), pp. 771-783. by Paul D. Dobson, Andrew J. Doig posted to protein-function support-vector-machine by MarcoAlvarez on 2008-09-12 07:15:27 as
	MetalDetector: a web server for predicting metal binding sites and disulfide bridges in proteins from sequence [My Copy] Bioinformatics (16 July 2008), btn371. by Marco Lippi, Andrea Passerini, Marco Punta, Burkhard Rost, Paolo Frasconi posted to biochemistry bioinformatics disulfide-bridges machine-learning metal-binding-sites prediction-servers protein-function protein-structure by paolo to the group Bioinformatics on 2008-08-14 13:59:31 as along with 1 person druvus
	Design of protein function leaps by directed domain interface evolution [My Copy] Proceedings of the National Academy of Sciences (29 April 2008), 0801097105. by Jin Huang, Akiko Koide, Koki Makabe, Shohei Koide posted to biochemistry domain-evolution domain-interface-evolution evolution protein-function proteins by cmzmasek on 2008-04-30 20:42:56 as along with 5 people GeeSharpMinor choonpeng zwang marck phoenixzxl
	Advances in protein structure prediction and de novo protein design: A review [My Copy] Chemical Engineering Science In Biomolecular Engineering, Vol. 61, No. 3. (February 2006), pp. 966-988. by C. A. Floudas, H. K. Fung, S. R. Mcallister, M. Monnigmann, R. Rajgaria posted to protein-function protein-modelling protein-structure by massivemayhem on 2007-09-06 16:22:01 as along with 3 people flbarroso schuylrp granujilla
	JOY: protein sequence-structure representation and analysis [My Copy] Bioinformatics, Vol. 14, No. 7. (1 August 1998), pp. 617-623. by K. Mizuguchi, C. M. Deane, T. L. Blundell, M. S. Johnson, J. P. Overington posted to protein-function protein-structure software by massivemayhem on 2007-06-29 09:14:13 as along with 8 people mgomes bicko chrn laurabailey medic0747 cdeane sebk TOchi
	Reactome: a knowledgebase of biological pathways. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by G. Joshi-Tope, M. Gillespie, I. Vastrik, et al.P. D'Eustachio, E. Schmidt, B. de Bono, B. Jassal, G. R. Gopinath, G. R. Wu, L. Matthews, S. Lewis, E. Birney, L. Stein posted to gene-function pathways protein-function protein-protein-interactions by massivemayhem on 2007-06-21 15:10:54 as along with 11 people and 1 group daforerog fisherp reyez aalibes kuhn yas dullhunk duartemolha cerami yggdrasil guhjy T_lab
	Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families. [My Copy] Protein Sci, Vol. 15, No. 9. (September 2006), pp. 2120-2128. by A. del Sol, H. Fujihashi, D. Amoros, R. Nussinov posted to algorithm networks protein-function by massivemayhem on 2007-06-12 14:39:03 as along with 4 people neils bicko drastic choonpeng
	Network Analysis of Protein Structures Identifies Functional Residues [My Copy] Journal of Molecular Biology, Vol. 344, No. 4. (03 December 2004), pp. 1135-1146. by Gil Amitai, Arye Shemesh, Einat Sitbon, et al.Maxim Shklar, Dvir Netanely, Ilya Venger, Shmuel Pietrokovski posted to algorithm networks protein-function by massivemayhem on 2007-06-12 14:27:44 as along with 8 people and 1 group Diego_Prada chrn vavi bicko Einat amitai sriram_s siebertm structural_bioinformatics
	The PROSITE database. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Nicolas Hulo, Amos Bairoch, Virginie Bulliard, et al.Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. Sigrist posted to database protein-function by massivemayhem on 2007-06-12 13:09:54 as along with 6 people and 1 group maria_hauser yas happy_manatee sriram_s neils siebertm T_lab
	Pfam: clans, web tools and services. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006), pp. 247-251. by R. D. Finn, J. Mistry, B. Schuster-Böckler, et al.S. Griffiths-Jones, V. Hollich, T. Lassmann, S. Moxon, M. Marshall, A. Khanna, R. Durbin, S. R. Eddy, E. L. Sonnhammer, A. Bateman posted to database protein-function protein-structure by massivemayhem on 2007-06-12 13:08:50 as along with 12 people robert85 cerca gbart dullhunk cjeans siebertm lpfernandes pablomendes antonkratz natstreet Lombardo_7 phoenixzxl
	The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D129-133. by Craig T. Porter, Gail J. Bartlett, Janet M. Thornton posted to database protein-function by massivemayhem on 2007-06-12 13:05:20 as along with 12 people and 2 groups barmak7282 ucbcjbm pablocarb tjimenez baaden chrn jwm gbart tny sriram_s siebertm grottenolm Radiation_Damage Stressosome
	Text mining and protein annotations: the construction and use of protein description sentences. [My Copy] Genome Inform, Vol. 17, No. 2. (2006), pp. 121-130. by M. Krallinger, R. Malik, A. Valencia posted to protein-function text-mining by yas on 2007-05-24 16:53:30 as along with 1 person and 1 group florianleitner T_lab

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protein-structure	20
database	13
protein	8
bioinformatics	7
evolution	6
machine-learning	6
drug	5
drug-binding	5
protein-annotation	5
protein_structure	5
algorithm	4
cheminformatics	4
domains	4
enzyme	4
function-prediction	4
moonlighting	4
support-vector-machine	4
systems-biology	4
biochemistry	3
networks	3
protein-folding	3
proteins	3
software	3
svm	3
amino-acid-propensities	2
binding-site	2
conservation	2
disulfide-bridges	2
lipid	2
metal-binding-sites	2
pathways	2
prediction-servers	2
promiscuity	2
review	2
simulation	2
structure	2
text-mining	2
active-site	1
amphiphiles	1
annotation-pipeline	1
array	1
biophysics	1
combinations	1
docking	1
domain-evolution	1
domain-interface-evolution	1
enzymes	1
evolutionary-info	1
example	1
gene-function	1
graph-kernel	1
high-throughput	1
hydrogen-exchange	1
immobilisation	1
inhibitor	1
knockouts	1
ligand-binding	1
lipid-bilayer	1
lipidome	1
membrane-curvature	1
metabolism	1
metagenomics	1
modular-systems	1
modularity	1
molecular-evolution	1
multiple-knockouts	1
network	1
nmr	1
ontologies	1
ontology	1
ppi-network	1
protein-engineering	1
protein-kinetics	1
protein-ligand	1
protein-ligand-binding	1
protein-modelling	1
protein-protein-interactions	1
protein-solubility	1
protein-stability	1
redundancy	1
reviews	1
rule	1
rules	1
sar	1
sbml	1
specificity	1
structural-biology	1
synergy	1
transporter	1
trypsin	1
uptake	1
wilko	1

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