Tag protein-protein [at least 200 articles] Export

Recent papers classified by the tag protein-protein.

	pH-Dependent Association of Proteins. The Test Case of Monoclonal Antibody HyHEL-5 and Its Antigen Hen Egg White Lysozyme [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 47. (26 November 2009), pp. 15662-15669. by Maciej Długosz, Jan M. Antosiewicz, Joanna Trylska posted to titration protein-protein kinetics electrostatics diffusion brownian_dynamics binding by jmccammon to the group McCammon on 2009-11-21 20:11:33 as
	Hydrophile scanning as a complement to alanine scanning for exploring and manipulating protein-protein recognition: Application to the Bim BH3 domain [My Copy] Protein Sci (8 May 2008), ps.032896.107. by Melissa D. Boersma, Jack D. Sadowsky, York A. Tomita, Samuel H. Gellman posted to protein-protein protein ppi pauly boersma by wilbur on 2009-11-18 14:09:27 as along with 2 people emiko paulschlesinger
	Structural systems biology: modelling protein interactions. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 3. (March 2006), pp. 188-197. by Patrick Aloy, Robert B. Russell posted to system_biology protein-protein binding by flbarroso on 2009-11-14 16:16:46 as along with 24 people and 3 groups timg chica Scis0000002 ubcg08l ana aalibes bicko xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch higueruelo chad_davis jteyra structural_bioinformatics Bioinformatics WetBiology
	GWIDD: Genome-wide protein docking database [My Copy] Nucl. Acids Res. (9 November 2009), gkp944. by Petras J. Kundrotas, Zhengwei Zhu, Ilya A. Vakser posted to protein-protein modelling genomics docking database by neils on 2009-11-10 22:32:22 as
	The Biomolecular Interaction Network Database and related tools 2005 update [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_1. (1 January 2005), pp. D418-424. by C. Alfarano, C. E. Andrade, K. Anthony, et al.N. Bahroos, M. Bajec, K. Bantoft, D. Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, I. Donaldson, D. Dorairajoo, M. J. Dumontier, M. R. Dumontier, V. Earles, R. Farrall, H. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, R. Haw, A. Hrvojic, L. Hurrell, R. Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, B. Parker, G. Pintilie, R. Pirone, J. J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, K. Snyder, R. Stasiuk, D. Strumpf, B. Tuekam, S. Tao, Z. Wang, M. White, R. Willis, C. Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, S. Zhang, K. Zheng, T. Pawson, B. F. F. Ouellette, C. W. V. Hogue posted to protein-protein bioinformatics by flbarroso on 2009-11-10 16:49:30 as
	MINT, the molecular interaction database: 2009 update [My Copy] Nucl. Acids Res. (6 November 2009), gkp983. by Arnaud Ceol, Andrew Chatr Aryamontri, Luana Licata, et al.Daniele Peluso, Leonardo Briganti, Livia Perfetto, Luisa Castagnoli, Gianni Cesareni posted to protein-protein mint interaction database by neils on 2009-11-08 22:19:35 as along with 2 people aceol brianb
	STITCH 2: an interaction network database for small molecules and proteins [My Copy] Nucl. Acids Res. (6 November 2009), gkp937. by Michael Kuhn, Damian Szklarczyk, Andrea Franceschini, et al.Monica Campillos, Christian von Mering, Lars J. Jensen, Andreas Beyer, Peer Bork posted to stitch protein-protein protein-ligand network interaction database by neils on 2009-11-08 22:18:17 as along with 1 person Yanno
	Computer-aided design of functional protein interactions [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (19 October 2009), pp. 797-807. by Daniel J. Mandell, Tanja Kortemme posted to protein-protein drug-design by flbarroso on 2009-11-03 20:48:21 as along with 3 people and 2 groups robertrentzsch cchang pablocarb Orengo Group Journal Picks Chang group
	Structure of Protein Interaction Networks and Their Implications on Drug Design [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (30 October 2009), e1000550. by Takeshi Hase, Hiroshi Tanaka, Yasuhiro Suzuki, So Nakagawa, Hiroaki Kitano posted to protein-protein nov09 network drug by nickolay on 2009-11-03 20:45:42 as along with 9 people and 1 group kiekyon kshameer zwang phoenixzxl venancio CorinYeats ess30 poirel jbesnard Orengo Group Journal Picks
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to protein-protein prediction machine-learning interface interaction energy by neils on 2009-11-02 04:17:49 as along with 6 people and 1 group sillitoe apaydin kshameer zwang phoenixzxl higueruelo Orengo Group Journal Picks
	Rational Design of Solution Additives for the Prevention of Protein Aggregation [My Copy] Vol. 87, No. 3. (1 September 2004), pp. 1631-1639. by Brian M. Baynes, Bernhardt L. Trout posted to protein_aggregation protein-protein prelim by whitead to the group Jiang Research Group on 2009-10-26 04:03:16 as
	Protein-protein interaction hotspots carved into sequences. [My Copy] PLoS computational biology, Vol. 3, No. 7. (13 July 2007) by Yanay Ofran, Burkhard Rost posted to protein-protein by superpyrin on 2009-10-25 10:54:52 as along with 9 people and 2 groups qluo bicko dchughes grahamc cjeans zwang Jporci Pao-Yang higueruelo G4ID Genetics-of-Gambling
	SHARP2: protein-protein interaction predictions using patch analysis [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. 1794-1795. by Yoichi Murakami, Susan Jones posted to protein-protein by superpyrin on 2009-10-25 10:46:44 as along with 3 people flbarroso bicko ameetsoni
	An automated decision-tree approach to predicting protein interaction hot spots [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 68, No. 4. (1 September 2007), pp. 813-823. by Steven J. Darnell, David Page, Julie C. Mitchell posted to protein-protein by superpyrin on 2009-10-25 09:55:39 as along with 2 people bicko cjeans
	Structure-based method for analyzing protein–protein interfaces [My Copy] Journal of Molecular Modeling, Vol. 10, No. 1. (17 February 2004), pp. 44-54. by Ying Gao, Renxiao Wang, Luhua Lai posted to protein-protein by superpyrin on 2009-10-25 09:41:53 as
	In silico design of tubulin-targeted antimitotic peptides [My Copy] Nature Chemistry, Vol. 1, No. 8. (23 October 2009), pp. 642-648. by Stefano Pieraccini, Giorgio Saladino, Graziella Cappelletti, et al.Daniele Cartelli, Pierangelo Francescato, Giovanna Speranza, Paolo Manitto, Maurizio Sironi posted to tubulin protein-protein peptides by flbarroso on 2009-10-23 13:49:24 as
	Protein\|[ndash]\|protein interactions: Making drug design second nature [My Copy] Nature Chemistry, Vol. 1, No. 8. (01 November 2009), pp. 596-597. by Dan L. Sackett, David Sept posted to protein-protein drug-design by flbarroso on 2009-10-23 13:48:55 as along with 1 person renatomilani
	Towards an understanding of membrane-mediated protein-protein interactions [My Copy] Faraday Discuss., Vol. 144 (2010), pp. 359-367. by Marianna Yiannourakou, Luca Marsella, Frederick Meyer, Berend Smit posted to protein-protein membrane lipid_bilayers by flbarroso on 2009-10-22 12:07:47 as along with 1 person sobolevnrm
	Induction of protein-protein interactions in live cells using light [My Copy] Nature Biotechnology, Vol. 27, No. 10. (04 October 2009), pp. 941-945. by Masayuki Yazawa, Amir M. Sadaghiani, Brian Hsueh, Ricardo E. Dolmetsch posted to protein-protein by flbarroso on 2009-10-19 15:57:27 as along with 2 people mhamidi grahamc
	Free Energy Landscapes of Encounter Complexes in Protein-Protein Association [My Copy] Biophysical Journal, Vol. 76, No. 3. (March 1999), pp. 1166-1178. by C. Camacho posted to protein-protein paper1 hydration by whitead to the group Jiang Research Group on 2009-10-18 18:43:38 as along with 4 people flbarroso ras bicko dgront
	Geometric De-noising of Protein-Protein Interaction Networks [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (7 August 2009), e1000454. by Oleksii Kuchaiev, Marija Rašajski, Desmond J. Higham, Nataša Pržulj posted to sep09 protein-protein plos interaction_networks geometric_features by klexa on 2009-10-07 14:10:11 as along with 8 people and 1 group CorinYeats tmmurali roys grahamc zwang robfsouza phoenixzxl kiekyon Orengo Group Journal Picks
	Prediction of the Absolute Aggregation Rates of Amyloidogenic Polypeptide Chains [My Copy] Journal of Molecular Biology, Vol. 341, No. 5. (27 August 2004), pp. 1317-1326. by Kateri F. DuBay, Amol P. Pawar, Fabrizio Chiti, Jesús Zurdo, Christopher M. Dobson, Michele Vendruscolo posted to protein-protein diabetes amyloid alzheimer aggregation by flbarroso on 2009-10-07 01:21:21 as along with 2 people bobychan chiufanlee
	Molecular determinants of the aggregation behavior of alpha- and beta-synuclein [My Copy] Protein Science, Vol. 17, No. 5. (2008), pp. 887-898. by Robert C. Rivers, Janet R. Kumita, Gian G. Tartaglia, et al.Matthew M. Dedmon, Amol Pawar, Michele Vendruscolo, Christopher M. Dobson, John Christodoulou posted to protein-protein aggregation by flbarroso on 2009-10-07 01:10:29 as
	Position-Dependent Electrostatic Protection against Protein Aggregation [My Copy] ChemBioChem, Vol. 10, No. 8. (2009), pp. 1309-1312. by Alexander K. Buell, Gian G. Tartaglia, Neil R. Birkett, et al.Christopher A. Waudby, Michele Vendruscolo, Xavier Salvatella, Mark E. Welland, Christopher M. Dobson, Tuomas P. J. Knowles posted to protein-protein electrostatics aggregation by flbarroso on 2009-09-30 23:58:05 as
	Optimal docking area: a new method for predicting protein-protein interaction sites. [My Copy] Proteins, Vol. 58, No. 1. (1 January 2005), pp. 134-143. by J. Fernandez-Recio, M. Totrov, C. Skorodumov, R. Abagyan posted to structural_model solvation protein-protein protein-ligand docking 2005 by klexa on 2009-09-29 20:57:02 as along with 5 people and 2 groups jwm bicko schlauchi cjeans marti Radiation_Damage Stressosome
	How can biochemical reactions within cells differ from those in test tubes? [My Copy] J Cell Sci, Vol. 119, No. 14. (15 July 2006), pp. 2863-2869. by Allen P. Minton posted to protein-protein metabolic-channelling crowding by pmendes on 2009-09-29 16:11:38 as along with 2 people raik ocs
	Predicting protein-protein binding sites in membrane proteins. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 312. by Andrew J. Bordner posted to random-forest protein-protein prediction membrane interaction by neils on 2009-09-25 00:17:27 as along with 4 people and 1 group sillitoe hryk niallhaslam reyez Orengo Group Journal Picks
	The inverse and direct Hofmeister series for lysozyme [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 36. (8 September 2009), pp. 15249-15253. by Yanjie Zhang, Paul S. Cremer posted to protein-protein hofmeister by mikaellund on 2009-09-21 15:18:13 as along with 2 people qshao paulschlesinger
	Prediction of protein-protein binding site by using core interface residue and support vector machine [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 December 2008), 553. by Nan Li, Zhonghua Sun, Fan Jiang posted to vector using support site residue protein-protein prediction of machine interface core by binding and by jinghu_fandm on 2009-09-18 17:25:41 as along with 1 person reyez
	Protein-protein interaction networks and biology--what's the connection? [My Copy] Nature biotechnology, Vol. 26, No. 1. (January 2008), pp. 69-72. by Luke Hakes, John W. Pinney, David L. Robertson, Simon C. Lovell posted to review protein-protein network interaction bias by ptrobajo on 2009-09-17 10:30:39 as along with 19 people and 1 group colmryan lawraga flbarroso Yanno guhjy tmmurali jfr balicea dullhunk neils mikaelhuss cjeans nedwards biehl shikin mclarenv Yumyai paolomarcatili zdai GeneGo
	High-confidence prediction of global interactomes based on genome-wide coevolutionary networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 3. (22 January 2008), pp. 934-939. by David Juan, Florencio Pazos, Alfonso Valencia posted to protein-protein phylogeny network interactome interaction coevolution by ptrobajo on 2009-09-17 10:04:48 as along with 18 people and 1 group dfdong biomcgary qluo winterschlaefer marti tmmurali brant balicea sebastien_vigneau bluto cjeans aconesa Katje roys friendpine huali mdstobbe paolomarcatili microbiology_nijmegen
	Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 234. by Andrew J. Bordner, Andrey A. Gorin posted to protein-protein interface by somak on 2009-09-16 20:00:16 as along with 6 people bicko robfsouza chad_davis guhjy neils phoenixzxl
	Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 241. by Kevin Yip, Philip Kim, Drew McDermott, Mark Gerstein posted to protein-protein bioinformatics by flbarroso on 2009-09-14 13:16:54 as along with 8 people and 1 group zwang jago gwallau installe barriot kshameer peteruetz phoenixzxl Simulation of operations and interactions
	Integrative analysis for finding genes and networks involved in diabetes and other complex diseases. [My Copy] Genome biology, Vol. 8, No. 11. (2007), R253. by Regine Bergholdt, Zenia M. Størling, Kasper Lage, et al.E. Olof Karlberg, Páll I. Olason, Mogens Aalund, Jørn Nerup, Søren Brunak, Christopher T. Workman, Flemming Pociot posted to protein-protein network integration diabetes by ptrobajo on 2009-09-12 22:04:50 as along with 4 people carlk guhjy barriot iantarr
	PPI spider: a tool for the interpretation of proteomics data in the context of protein-protein interaction networks. [My Copy] Proteomics, Vol. 9, No. 10. (May 2009), pp. 2740-2749. by Alexey V. Antonov, Sabine Dietmann, Igor Rodchenkov, Hans W. Mewes posted to proteomics protein-protein npc interpretation by ptrobajo on 2009-09-12 21:40:45 as along with 2 people guhjy sjcockell
	A Probabilistic Functional Network of Yeast Genes [My Copy] Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558. by Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward M. Marcotte posted to yeast roberto protein-protein probmod predictions predict_function ppi pathway_prediction nw_modularity networks network methods memo interactome interactions integrative gene-gene gene-expression functional-genome function computational clustering class biology bioinformatics bio-stat bio applied-math animal-model by isotelesis on 2009-09-12 00:46:26 as along with 20 people and 3 groups snow_dragon freesci eesruiz aelef jiny irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant kintoki balicea svdate ellakat roys dbk-lab kdl EBI-regulation
	Integrating siRNA and protein-protein interaction data to identify an expanded insulin signaling network. [My Copy] Genome research, Vol. 19, No. 6. (4 June 2009), pp. 1057-1067. by Zhidong Tu, Carmen Argmann, Kenny K. Wong, et al.Lyndon J. Mitnaul, Stephen Edwards, Iliana C. Sach, Jun Zhu, Eric E. Schadt posted to sirna protein-protein insulin_resistance enrichment diabetes by ptrobajo on 2009-09-11 21:14:17 as along with 4 people megraw kshameer roys brianb
	Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids". [My Copy] Proteins, Vol. 67, No. 2. (1 May 2007), pp. 418-434. by Virginie Lafont, Michael Schaefer, Roland H. Stote, Danièle Altschuh, Annick Dejaegere posted to surface_area protein-protein pb by flbarroso on 2009-09-07 18:11:54 as along with 2 people higueruelo jteyra
	Role of electrostatics in antibody-antigen association: anti-hen egg lysozyme/lysozyme complex (HyHEL-5/HEL). [My Copy] Journal of biomolecular structure & dynamics, Vol. 12, No. 2. (October 1994), pp. 439-456. by S. P. Slagle, R. E. Kozack, S. Subramaniam posted to protein-protein pb lysozyme electrostatics by flbarroso on 2009-09-07 18:11:10 as
	Association and electrostatic steering of alpha-lactalbumin-lysozyme heterodimers [My Copy] Phys. Chem. Chem. Phys. (2009) by Bjorn A. Persson, Mikael Lund posted to van-der-waals protein-protein lysozyme electrostatics alfa-lactalbumin by flbarroso on 2009-08-30 03:27:53 as along with 1 person mikaellund
	Isoquinolin-1-one inhibitors of the MDM2-p53 interaction. [My Copy] ChemMedChem, Vol. 3, No. 7. (July 2008), pp. 1118-1128. by Ulli Rothweiler, Anna Czarna, Marcin Krajewski, et al.Jolanta Ciombor, Cédric Kalinski, Vladimir Khazak, Günther Ross, Natalia Skobeleva, Lutz Weber, Tad A. Holak posted to protein-protein mdm2 by ubcg08l on 2009-08-24 16:18:41 as
	Structural biology of the tumor suppressor p53. [My Copy] Annual review of biochemistry, Vol. 77, No. 1. (2008), pp. 557-582. by Andreas C. Joerger, Alan R. Fersht posted to protein-protein mdm2 by ubcg08l on 2009-08-24 16:06:24 as along with 1 person guhjy
	Crystal Structures of Human MdmX (HdmX) in Complex with p53 Peptide Analogues Reveal Surprising Conformational Changes. [My Copy] The Journal of biological chemistry, Vol. 284, No. 13. (27 March 2009), pp. 8812-8821. by Joerg Kallen, Arnaud Goepfert, Anke Blechschmidt, et al.Aude Izaac, Martin Geiser, Gisele Tavares, Paul Ramage, Pascal Furet, Keiichi Masuya, Joanna Lisztwan posted to protein-protein mdm2 by ubcg08l on 2009-08-24 15:58:37 as
	Design of protein-protein interaction inhibitors based on protein epitope mimetics. [My Copy] Chembiochem : a European journal of chemical biology, Vol. 10, No. 6. (17 April 2009), pp. 971-973. by John A. Robinson posted to protein-protein mdm2 by ubcg08l on 2009-08-24 15:57:45 as
	A realistic assessment of methods for extracting gene/protein interactions from free text. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (28 July 2009), 233. by Renata Kabiljo, Andrew B. Clegg, Adrian J. Shepherd posted to text_mining protein-protein interactions by grahamc on 2009-08-16 02:52:06 as along with 11 people and 4 groups henk-cul martingerner DTD102 satre farzanehs mitko sjcockell sillitoe andrewclegg cisevol barriot dbmi-nlp Journal picks Orengo Group Journal Picks BergmanLab
	A Multisolute Osmotic Virial Equation for Solutions of Interest in Biology [My Copy] The Journal of Physical Chemistry B, Vol. 111, No. 7. (1 February 2007), pp. 1775-1785. by J. A. W. Elliott, R. C. Prickett, H. Y. Elmoazzen, K. R. Porter, L. E. Mcgann posted to albumin hemoglobin osmotic ovalbumin protein-protein virial by flbarroso on 2009-08-07 20:09:38 as
	Rapid Measurement of Protein Osmotic Second Virial Coefficients by Self-Interaction Chromatography [My Copy] Vol. 82, No. 3. (1 March 2002), pp. 1620-1631. by Peter M. Tessier, Abraham M. Lenhoff, Stanley I. Sandler posted to virial protein-protein lysozyme crystallization chymotrypsinogen chromatography by flbarroso on 2009-08-07 20:05:07 as
	A simpler analysis for the measurement of second virial coefficients by self-interaction chromatography [My Copy] Analytical Biochemistry, Vol. 371, No. 1. (01 December 2007), pp. 21-25. by D. Winzor, D. Scott, P. Wills posted to chromatography lysozyme protein-protein virial by flbarroso on 2009-08-07 17:46:38 as
	Site-specific dynamic nuclear polarization of hydration water as a generally applicable approach to monitor protein aggregation [My Copy] Phys. Chem. Chem. Phys., Vol. 11, No. 31. (2009), pp. 6833-6839. by Anna Pavlova, Evan R. Mccarney, Dylan W. Peterson, Frederick W. Dahlquist, John Lew, Songi Han posted to amyloid diseases protein-protein by flbarroso on 2009-07-30 15:47:34 as
	Parsing Biomedical Literature [My Copy] Natural Language Processing – IJCNLP 2005 (2005), pp. 58-69. by Matthew Lease, Eugene Charniak posted to karla parsing protein-protein text-mining by eesruiz to the group ImagCom - Biomedical Text Computing on 2009-07-28 21:17:01 as along with 2 people dmcc TheresaNiederberger

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interactions	220
interaction	181
bioinformatics	88
electrostatics	80
prediction	71
binding	67
protein	51
database	39
network	39
interaction-network	35
docking	34
yeast	32
methods	30
evolution	29
networks	29
review	27
structure	27
domains	26
genome	21
human	21
lysozyme	21
crystallization	20
interface	20
brownian_dynamics	19
thrombin	19
diffusion	16
virial	16
domain	15
hirudin	15
aggregation	14
biology	14
computational	14
barnase	13
beta-lactoglobulin	13
network_biology	13
tools	13
barstar	12
disease	12
alfa-lactalbumin	11
interactome	11
md	11
statistics	11
use	11
complex	10
data_integration	10
expression	10
pb	10
proteomics	10
drug_design	9
ecm	9
predictions	9
solvation	9
amyloid	8
analysis	8
antibody	8
folding	8
genes	8
mdm2	8
protein-interaction-networks	8
alignment	7
conservation	7
drug	7
elastin	7
hydrophobicity	7
kinetics	7
model_organisms	7
modularity	7
text-mining	7
algorithm	6
antibody-antigen	6
coarse_grain	6
complexes	6
drug-design	6
light-scattering	6
membrane	6
nmr	6
peptide	6
pka	6
ppi	6
properties	6
scale-free	6
titration	6
topology	6
whey	6
alzheimer	5
antibodies	5
continnum	5
drosophila	5
free_energy	5
gene	5
lactoferrin	5
motifs	5
network_topology	5
peptides	5
pig	5
power-law	5
protein-interaction	5
software	5
system_biology	5
systems_biology	5

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