Tag protein-structure [at least 200 articles] Export

Recent papers classified by the tag protein-structure.

	Toward a quantitative theory of intrinsically disordered proteins and their function [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 47. (24 November 2009), pp. 19819-19823. by Jintao Liu, James R. Faeder, Carlos J. Camacho posted to protein-structure protein-protein-interaction by icq242500260 on 2009-11-30 10:45:06 as along with 5 people TRHvidsten biehl dfdong samubernard jjray
	Emerging structural insights into bacterial tyrosine kinases [My Copy] Trends in Biochemical Sciences, Vol. 34, No. 7. (12 July 2009), pp. 351-357. by Daniel C. Lee, Zongchao Jia posted to structure protein-structure phosphorylation by hryk on 2009-11-27 11:56:49 as along with 4 people carlosjavierna reyez kshameer neils
	Atomic resolution structures of bacteriorhodopsin photocycle intermediates: the role of discrete water molecules in the function of this light-driven ion pump. [My Copy] Biochimica et biophysica acta, Vol. 1460, No. 1. (30 August 2000), pp. 133-156. by H. Luecke posted to review protein-structure bacteriorhodopsin by kevinchannon on 2009-11-17 16:17:45 as
	Proton translocation mechanism and energetics in the light-driven pump bacteriorhodopsin. [My Copy] Biochimica et biophysica acta, Vol. 1183, No. 2. (7 December 1993), pp. 241-261. by J. K. Lanyi posted to review protein-structure bacteriorhodopsin by kevinchannon on 2009-11-17 16:16:57 as
	Three-dimensional model of purple membrane obtained by electron microscopy [My Copy] Nature, Vol. 257, No. 5521. (04 September 1975), pp. 28-32. by R. Henderson, P. N. T. Unwin posted to xrd protein-structure historical bacteriorhodopsin by kevinchannon on 2009-11-12 11:49:04 as
	An aPKC-Exocyst Complex Controls Paxillin Phosphorylation and Migration through Localised JNK1 Activation [My Copy] PLoS Biol, Vol. 7, No. 11. (3 November 2009), e1000235. by Carine Rosse, Etienne Formstecher, Katrina Boeckeler, et al.Yingming Zhao, Joachim Kremerskothen, Michael D. White, Jacques H. Camonis, Peter J. Parker posted to protein-structure programming molecular_dynamics maximum-likelifood by hryk on 2009-11-06 09:15:04 as along with 1 person renatomilani
	Predicting Enzyme Class From Protein Structure Without Alignments [My Copy] Journal of Molecular Biology, Vol. 345, No. 1. (07 January 2005), pp. 187-199. by Paul D. Dobson, Andrew J. Doig posted to protein-structure protein-function by MarcoAlvarez on 2009-11-02 19:02:05 as along with 5 people barmak7282 pauldobson baaden eweaver dullhunk
	Dynamic interactions of proteins in complex networks: a more structured view [My Copy] FEBS Journal, Vol. 276, No. 19. (2009), pp. 5390-5405. by Amelie Stein, Roland A. Pache, Pau Bernadó, Miquel Pons, Patrick Aloy posted to protein-structure by hryk on 2009-10-21 12:11:38 as
	Accuracy analysis of multiple structure alignments [My Copy] Protein Science, Vol. 18, No. 10. (October 2009), pp. 2027-2035. by Christoph Berbalk, Christine S. Schwaiger, Peter Lackner posted to structure protsci protein-structure protein oct09 alignment by klexa on 2009-10-07 13:34:35 as along with 1 person nickolay
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to review proteins protein-structure protein-stability by kevinchannon on 2009-09-30 23:19:14 as along with 20 people and 3 groups dfdong tomhebbron anuragsethi ahmetbakan klexa lauresultan dbikard ibuch ramiro2k barry pablocarb ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger structural_bioinformatics McCammon baker-group
	Molecular conformation of a peptide fragment of transthyretin in an amyloid fibril [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 26. (24 December 2002), pp. 16748-16753. by Christopher P. Jaroniec, Cait E. Macphee, Nathan S. Astrof, Christopher M. Dobson, Robert G. Griffin posted to protein-structure nmr fibrils amyloid by kevinchannon on 2009-09-03 16:16:30 as along with 2 people c_macphee Diego_Prada
	Torsion angle dynamics for NMR structure calculation with the new program DYANA [My Copy] Journal of Molecular Biology, Vol. 273, No. 1. (17 October 1997), pp. 283-298. by P. Güntert, C. Mumenthaler, K. Wüthrich posted to software protein-structure nmr algorithmic by stharward on 2009-08-13 16:52:56 as along with 5 people dsmueller ras babakap BragilMassoud lna
	Protein NMR Structure Determination with Automated NOE Assignment Using the New Software CANDID and the Torsion Angle Dynamics Algorithm DYANA [My Copy] Journal of Molecular Biology, Vol. 319, No. 1. (24 May 2002), pp. 209-227. by Torsten Herrmann, Peter Güntert, Kurt Wüthrich posted to software protein-structure nmr by stharward on 2009-08-13 13:57:04 as along with 3 people apaydin kumar_physics lna
	Identifying native-like protein structures with scoring functions based on all-atom ECEPP force fields, implicit solvent models and structure relaxation [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. 1. (2009), pp. 38-51. by Yelena A. Arnautova, Yury N. Vorobjev, Jorge A. Vila, Harold A. Scheraga posted to structure scoring protein-structure near-native jcc force-fields aug09 by klexa on 2009-08-11 17:40:54 as
	Structural basis for the [beta] lactam resistance of PBP2a from methicillin-resistant Staphylococcus aureus [My Copy] Nat Struct Mol Biol, Vol. 9, No. 11. (November 2002), pp. 870-876. by Daniel Lim, Natalie C. J. Strynadka posted to aptamems mrsa protein-structure by sjcockell on 2009-08-10 10:17:18 as along with 1 person ivke
	The long coming of computational structural biology [My Copy] Journal of Structural Biology, Vol. 163, No. 3. (September 2008), pp. 254-257. by A. Lupas posted to structural-biology review protein-structure protein-folding crystallography by stharward on 2009-08-04 19:23:30 as along with 2 people and 2 groups oteri zwang Structural Biology Group TorVergata psique personal
	Stereochemistry of polypeptide chain configurations [My Copy] Journal of molecular biology, Vol. 7 (July 1963), pp. 95-99. by G. N. Ramachandran, C. Ramakrishnan, V. Sasisekharan posted to computational protein-structure by stharward on 2009-08-04 19:10:12 as along with 7 people kumar_physics yangjustinc reyez cen4ik jwm wouterboomsma Diego_Prada
	A comparative study of available software for high-accuracy homology modeling: from sequence alignments to structural models. [My Copy] Protein science : a publication of the Protein Society, Vol. 15, No. 4. (1 April 2006), pp. 808-824. by Akbar Nayeem, Doree Sitkoff, Stanley Krystek posted to protein-structure review by stharward on 2009-08-03 20:14:38 as along with 1 person BioNica
	Selection of mutations for increased protein stability [My Copy] Current Opinion in Biotechnology, Vol. 13, No. 4. (1 August 2002), pp. 333-337. by Bertus van den Burg, Vincent G. H. Eijsink posted to review rational-design protein-structure by stharward on 2009-07-23 16:24:41 as
	Design, structure and stability of a hyperthermophilic protein variant [My Copy] Nat Struct Mol Biol, Vol. 5, No. 6. (June 1998), pp. 470-475. by Sandra M. Malakauskas, Stephen L. Mayo posted to rational-design protein-structure by stharward on 2009-07-23 16:23:10 as
	The rational design of amino acid sequences by artificial neural networks and simulated molecular evolution: de novo design of an idealized leader peptidase cleavage site [My Copy] Biophysical Journal, Vol. 66, No. 2. (February 1994), pp. 335-344. by G. Schneider, P. Wrede posted to rational-design protein-structure neural-network by stharward on 2009-07-23 16:18:15 as
	Co-evolution of proteins with their interaction partners1 [My Copy] Journal of Molecular Biology, Vol. 299, No. 2. (02 June 2000), pp. 283-293. by Chern-Sing Goh, Andrew A. Bogan, Marcin Joachimiak, Dirk Walther, Fred E. Cohen posted to genetic-evolution phylogenetics protein-structure by stharward on 2009-07-23 14:49:51 as along with 6 people jperkins chica druvus Robinder opheliav cjeans
	Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations? [My Copy] Protein engineering, Vol. 7, No. 3. (1 March 1994), pp. 349-358. by I. N. Shindyalov, N. A. Kolchanov, C. Sander posted to protein-structure comparative-sequence-analysis by stharward on 2009-07-17 19:30:51 as along with 4 people qluo gbart nirfriedman kieran101
	PSPP: A Protein Structure Prediction Pipeline for Computing Clusters [My Copy] PLoS ONE, Vol. 4, No. 7. (16 July 2009), e6254. by Michael S. Lee, Rajkumar Bondugula, Valmik Desai, et al.Nela Zavaljevski, In-Chul Yeh, Anders Wallqvist, Jaques Reifman posted to cluster-computing prediction protein-structure by sjcockell on 2009-07-16 09:33:51 as
	A simple method for displaying the hydropathic character of a protein. [My Copy] Journal of molecular biology, Vol. 157, No. 1. (5 May 1982), pp. 105-132. by J. Kyte, R. F. Doolittle posted to hydrophobicity protein-structure by hryk on 2009-07-10 15:57:42 as along with 8 people barmak7282 thaliana chad_davis dgront medic0747 ashaytan Ema bicko
	Prediction of protein antigenic determinants from amino acid sequences [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 78, No. 6. (June 1981), pp. 3824-3828. by T. P. Hopp, K. R. Woods posted to hydrophobicity protein-structure by hryk on 2009-07-10 15:49:45 as along with 1 person ashaytan
	The PDB format, mmCIF, and other data formats. [My Copy] Methods of biochemical analysis, Vol. 44 (2003), pp. 161-179. by J. D. Westbrook, P. M. Fitzgerald posted to mmcif pdb protein-structure standards structure by idoerg on 2009-07-07 20:54:17 as
	QMEAN server for protein model quality estimation [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W510-514. by Pascal Benkert, Michael Kunzli, Torsten Schwede posted to database modelling nar protein-structure quality by sjcockell on 2009-06-30 14:16:35 as along with 3 people subramani sebk cat_hutchinson68
	DisProt: the Database of Disordered Proteins. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007), pp. D786-D793. by Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, et al.Vladimir Vacic, Marc S. Cortese, Agnes Tantos, Beata Szabo, Peter Tompa, Jake Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker posted to disorder protein-structure by hryk on 2009-06-26 12:56:38 as along with 2 people pablocarb robfsouza
	Prediction of disordered regions in proteins from position specific score matrices. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 573-578. by D. T. Jones, J. J. Ward posted to disorder protein-structure by hryk on 2009-06-26 12:55:13 as along with 2 people pablocarb chad_davis
	FlexServ: an integrated tool for the analysis of protein flexibility [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1709-1710. by Jordi Camps, Oliver Carrillo, Agusti Emperador, et al.Laura Orellana, Adam Hospital, Manuel Rueda, Damjan Cicin-Sain, Marco D'Abramo, Josep L. Gelpi, Modesto Orozco posted to protein-structure structure-analysis web-server by kshameer to the group structural_bioinformatics on 2009-06-17 17:57:34 as along with 2 people flbarroso sobolevnrm
	FINDSITE<sup>LHM</sup>: A Threading-Based Approach to Ligand Homology Modeling [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (5 June 2009), e1000405. by Michal Brylinski, Jeffrey Skolnick posted to algorithm protein-structure structure-analysis web-server by kshameer on 2009-06-11 12:04:56 as along with 6 people and 2 groups phoenixzxl nickolay superpyrin reyez apaydin barry structural_bioinformatics McCammon
	Long-timescale molecular dynamics simulations of protein structure and function. [My Copy] Current opinion in structural biology, Vol. 19, No. 2. (08 April 2009), pp. 120-127. by John L. Klepeis, Kresten Lindorff-Larsen, Ron O. Dror, David E. Shaw posted to molecular-dynamics protein protein-structure structure toblog by idoerg on 2009-05-31 22:50:57 as along with 11 people and 1 group xdeupi agrossfield allmensch bmduggan r2s2 apaydin kiekyon Borelli sobolevnrm edws paulschlesinger baker-group
	A structure-based approach for detection of thiol oxidoreductases and their catalytic redox-active cysteine residues. [My Copy] PLoS computational biology, Vol. 5, No. 5. (May 2009) by S. M. Marino, V. N. Gladyshev posted to protein-structure by kshameer on 2009-05-19 07:39:20 as along with 1 person beapen
	Improving classification in protein structure databases using text mining. [My Copy] BMC bioinformatics, Vol. 10 (05 May 2009), 129. by A. Koussounadis, O. C. Redfern, D. T. Jones posted to protein-annotation protein-structure structure structure-classification toblog by idoerg on 2009-05-07 17:34:58 as along with 3 people liblab henk-cul reyez
	Combining docking and molecular dynamic simulations in drug design. [My Copy] Med Res Rev (6 June 2006) by Hernán Alonso, Andrey A A. Bliznyuk, Jill E E. Gready posted to molecular_dynamics protein-structure structure by hryk on 2009-05-06 20:29:01 as along with 8 people and 2 groups karinaecomp flbarroso oteri A_Coletta_Thesis aqeel yongzhao kazemi LamBras Structural Biology Group TorVergata TSRI_MGL
	Automated discovery of 3D motifs for protein function annotation [My Copy] Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 723-730. by Benjamin J. Polacco, Patricia C. Babbitt posted to protein-function protein-structure by MarcoAlvarez on 2009-04-23 19:51:04 as along with 3 people and 2 groups marcius eweaver rabio BioinfoCIPF SGU-CIPF
	Fluidic and Air-Stable Supported Lipid Bilayer and Cell-Mimicking Microarrays [My Copy] Journal of the American Chemical Society, Vol. 130, No. 19. (1 May 2008), pp. 6267-6271. by Yang Deng, Yini Wang, Bryan Holtz, et al.Jingyi Li, Nathan Traaseth, Gianluigi Veglia, Benjamin J. Stottrup, Robert Elde, Duanqing Pei, Athena Guo, X. Y. Zhu posted to array drug drug-binding immobilisation lipid-bilayer protein-function protein-structure sar structural-biology transporter uptake by pauldobson on 2009-04-16 09:23:02 as along with 1 person Buntworthy
	The relationship between protein structure and function: a comprehensive survey with application to the yeast genome. [My Copy] Journal of molecular biology, Vol. 288, No. 1. (23 April 1999), pp. 147-164. by H. Hegyi, M. Gerstein posted to protein-function protein-structure by MarcoAlvarez on 2009-04-13 09:24:11 as along with 5 people and 1 group pablocarb Einat eweaver tny siebertm structural_bioinformatics
	Variants of the Antibody Herceptin That Interact with HER2 and VEGF at the Antigen Binding Site [My Copy] Science, Vol. 323, No. 5921. (20 March 2009), pp. 1610-1614. by Jenny Bostrom, Shang-Fan Yu, David Kan, et al.Brent A. Appleton, Chingwei V. Lee, Karen Billeci, Wenyan Man, Franklin Peale, Sarajane Ross, Christian Wiesmann, Germaine Fuh posted to antibody cancer protein-engineering protein-structure therapy by idoerg on 2009-04-10 07:57:23 as along with 2 people and 1 group pineapple biomcgary Marcotte_Lab
	ProteinShader: illustrative rendering of macromolecules [My Copy] BMC Structural Biology, Vol. 9 (30 March 2009), 19. by Joseph R. Weber posted to graphics protein-structure structure by idoerg on 2009-04-02 18:41:27 as along with 1 person and 1 group jmccammon McCammon
	Algorithms for prediction of ?-helical and ?-structural regions in globular proteins1 [My Copy] Journal of Molecular Biology*, Vol. 88, No. 4. (October 1974), pp. 873-894. by V. Lim posted to protein-structure secondary-structure-prediction structure by idoerg on 2009-04-02 18:19:15 as
	FINDSITE: a combined evolution/structure-based approach to protein function prediction [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 378-391. by Jeffrey Skolnick, Michal Brylinski posted to function-prediction protein-annotation protein-structure review structure by idoerg on 2009-03-31 01:19:39 as along with 8 people and 1 group davidmam jperkins reyez TRHvidsten iaolier dimka gwallau operon Orengo Group Journal Picks
	Accurate Prediction of Peptide Binding Sites on Protein Surfaces [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (27 March 2009), e1000335. by Evangelia Petsalaki, Alexander Stark, Eduardo García-Urdiales, Robert B. Russell posted to binding-sites function-prediction protein-structure by idoerg on 2009-03-29 20:43:15 as along with 8 people and 1 group dfdong higueruelo pablocarb nickolay phoenixzxl neils sobolevnrm paulschlesinger baker-group
	Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures. [My Copy] PLoS computational biology, Vol. 5, No. 3. (27 March 2009), e1000331. by Alberto Pascual-García, David Abia, Angel R. Ortiz, Ugo Bastolla posted to protein-structure structure by idoerg on 2009-03-28 23:12:36 as along with 3 people dimka TRHvidsten yuslinaz
	Prediction of new serine proteinase inhibitors. [My Copy] Nat Struct Biol, Vol. 1, No. 10. (October 1994), pp. 735-743. by I. V. Kurinov, R. W. Harrison posted to docking inhibitor protein-function protein-structure simulation trypsin by pauldobson on 2009-03-28 07:14:56 as along with 1 person and 2 groups jwm Radiation_Damage Stressosome
	Trypsin: a case study in the structural determinants of enzyme specificity. [My Copy] Biol Chem, Vol. 377, No. 7-8. (g 1996), pp. 465-470. by L. Hedstrom posted to promiscuity protein-function protein-structure specificity by pauldobson on 2009-03-28 07:14:22 as along with 2 people and 2 groups marcius Nambi BioinfoCIPF SGU-CIPF
	The Protein Feature Ontology: a tool for the unification of protein feature annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2767-2772. by G. A. Reeves, K. Eilbeck, M. Magrane, et al.C. O'Donovan, L. Montecchi-Palazzi, M. A. Harris, S. Orchard, R. C. Jimenez, A. Prlic, T. J. Hubbard, H. Hermjakob, J. M. Thornton posted to ontologies protein-annotation protein-function protein-structure by idoerg on 2009-03-25 16:52:10 as along with 12 people and 2 groups timhubbard TRHvidsten nlapalu fgibson zimbo1 barriot guhjy grahamc chad_davis Zephyrus i000 dullhunk Roswell Cancer Crosstalk MuraLab
	Using directed evolution to probe the substrate specificity of mandelamide hydrolase [My Copy] Protein Engineering, Design and Selection, Vol. 22, No. 2. (1 February 2009), pp. 103-110. by Pan-Fen Wang, Alejandra Yep, George L. Kenyon, Michael J. Mcleish posted to binding-site directed-evolution evolution protein protein-structure specificity by pauldobson on 2009-03-25 09:57:22 as
	A systematic interaction map of validated kinase inhibitors with Ser/Thr kinases. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 51. (18 December 2007), pp. 20523-20528. by Oleg Fedorov, Brian Marsden, Vanda Pogacic, et al.Peter Rellos, Susanne Müller, Alex N. Bullock, Juerg Schwaller, Michael Sundström, Stefan Knapp posted to drug network-biology polypharmacology promiscuity protein-structure screen systems-biology thermal-shift-assay by pauldobson on 2009-03-20 23:58:06 as along with 4 people tmmurali cjeans renatomilani guhjy

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structuralalignment	22
protein-function	20
review	19
structure	18
protein	16
energy-function	14
residue-covariation	13
protein-folding	10
bioinformatics	8
database	8
drug	8
fragments	8
drug-binding	7
proteins	7
rational-design	6
algorithm	5
immunoglobulin	5
protein-design	5
protein-stability	5
proteinfolding	5
binding-site	4
cheminformatics	4
protein-annotation	4
representation	4
sequencealignment	4
alignment	3
amino-acid-usage	3
bacteriorhodopsin	3
biophysics	3
denatured	3
evolution	3
folding-pathway	3
ligand-binding	3
local-structure	3
machine-learning	3
molecular_dynamics	3
nmr	3
protein-dynamics	3
protein-engineering	3
quality-assessment	3
review-article	3
secondary-structure	3
software	3
structure-analysis	3
web-server	3
aug09	2
biochemistry	2
cdr	2
cost-minimisation	2
disorder	2
disulfide-bridges	2
disulfides	2
force-fields	2
fragment	2
function-prediction	2
hydrophobicity	2
jcc	2
lattice	2
mcmc	2
metal-binding-sites	2
near-native	2
oct09	2
prediction	2
prediction-servers	2
predictions	2
promiscuity	2
protein-ligand-binding	2
protein-protein-interaction	2
proteinrecognition	2
sampling	2
scoring	2
servers	2
simulation	2
solvent-exposure	2
specificity	2
structural-biology	2
toblog	2
allosteric	1
antiparallel	1
beta-sheet	1
cancer	1
cation-pi	1
comparative-sequence-analysis	1
computational	1
computer-simulation	1
fibrils	1
gene-length	1
graphics	1
historical	1
lipid	1
modeling	1
modelling	1
mrsa	1
nar	1
off-topic	1
protein-classification	1
protein-sequence	1
secondary-structure-prediction	1
standards	1
systems-biology	1

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