Tag protein_design [at least 200 articles] Export

Recent papers classified by the tag protein_design.

	Computer-aided design of functional protein interactions [My Copy] Nat Chem Biol, Vol. 5, No. 11. (19 November 2009), pp. 797-807. by Daniel J. Mandell, Tanja Kortemme posted to protein_engineering protein_design protein interface interactions in-silico function by pablocarb on 2009-11-04 14:55:17 as along with 2 people and 1 group cchang flbarroso Chang group
	Designing biological systems. [My Copy] Genes Dev, Vol. 21, No. 3. (1 February 2007), pp. 242-254. by D. A. Drubin, J. C. Way, P. A. Silver posted to switches standardization protein_design metabolic_engineering knowledge_construction biological_systems by Antoine_Decrulle on 2009-11-01 18:17:44 as along with 7 people and 1 group Scis0000002 druvus tmmurali hslee snowcrash dbikard grahamc SynBioSys
	Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0 [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2537-2543. by Yves Dehouck, Aline Grosfils, Benjamin Folch, Dimitri Gilis, Philippe Bogaerts, Marianne Rooman posted to web_tool protein_structure protein_stability protein_design aminoacid_substitution by jforment to the group Bioinformatics Core Service on 2009-10-21 14:07:40 as
	Structural studies of an engineered zinc biosensor reveal an unanticipated mode of zinc binding. [My Copy] Journal of molecular biology, Vol. 354, No. 4. (9 December 2005), pp. 829-840. by Patrick G. Telmer, Brian H. Shilton posted to protein_design by jwm on 2009-10-21 09:37:56 as
	A Helix Propensity Scale Based on Experimental Studies of Peptides and Proteins [My Copy] Vol. 75, No. 1. (1 July 1998), pp. 422-427. by C. Nick Pace, J. Martin Scholtz posted to protein_design prelim amin_acids by whitead to the group Jiang Research Group on 2009-10-19 21:00:30 as
	PROTDES: CHARMM toolbox for computational protein design [My Copy] Systems and Synthetic Biology, Vol. 2, No. 3. (1 December 2008), pp. 105-113. by María Suárez, Pablo Tortosa, Alfonso Jaramillo posted to protein_design by jwm on 2009-10-15 12:52:28 as along with 1 person oteri
	Computational design of receptors for an organophosphate surrogate of the nerve agent soman. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 21. (25 May 2004), pp. 7907-7912. by Malin Allert, Shahir S. Rizk, Loren L. Looger, Homme W. Hellinga posted to protein_design by jwm on 2009-10-15 11:18:44 as
	Chemical vectors for gene delivery: a current review on polymers, peptides and lipids containing histidine or imidazole as nucleic acids carriers [My Copy] British Journal of Pharmacology, Vol. 157, No. 2. (2009), pp. 166-178. by Patrick Midoux, Chantal Pichon, Jean-Jacques Yaouanc, Paul-Alain Jaffrès posted to protein_design polyelectrolyte_complexes nonviral_gene_delivery by devries on 2009-10-07 19:23:27 as
	Polyhistidine–PEG:DNA nanocomposites for gene delivery [My Copy] Biomaterials, Vol. 24, No. 24. (November 2003), pp. 4425-4433. by D. Putnam posted to protein_design nonviral_gene_delivery block_copolymers by devries on 2009-10-07 19:10:12 as
	Secreted production of a custom-designed, highly hydrophilic gelatin in Pichia pastoris [My Copy] Protein Eng., Vol. 14, No. 6. (1 June 2001), pp. 447-454. by Marc W. T. Werten, Wouter H. Wisselink, Tanja J. Jansen-van den Bosch, Eric C. de Bruin, Frits A. de Wolf posted to protein_design by devries on 2009-10-06 13:07:06 as
	Bioengineered silk protein-based gene delivery systems [My Copy] Biomaterials, Vol. 30, No. 29. (04 October 2009), pp. 5775-5784. by Keiji Numata, Balajikarthick Subramanian, Heather A. Currie, David L. Kaplan posted to protein_folding protein_design nonviral_gene_delivery by devries on 2009-10-06 11:44:42 as
	Filamentous Artificial Virus from a Self-Assembled Discrete Nanoribbon13 [My Copy] Angewandte Chemie International Edition, Vol. 47, No. 24. (2008), pp. 4525-4528. by Yong-beom Lim, Eunji Lee, You-Rim Yoon, Myeong S. Lee, Myongsoo Lee posted to viruses protein_folding protein_design nonviral_gene_delivery by devries on 2009-10-05 12:47:07 as
	Isomorphism between cell and human languages: molecular biological, bioinformatic and linguistic implications. [My Copy] Bio Systems, Vol. 44, No. 1. (1997), pp. 17-39. by S. Ji posted to protein_design by jwm on 2009-09-19 13:58:09 as
	Computer-Based Redesign of a β Sandwich Protein Suggests that Extensive Negative Design Is Not Required for De Novo β Sheet Design [My Copy] Structure, Vol. 16, No. 12. (12 December 2008), pp. 1799-1805. by Xiaozhen Hu, Huanchen Wang, Hengming Ke, Brian Kuhlman posted to protein_design beta_solenoid by jwm on 2009-09-18 11:47:24 as along with 1 person msuarezdiez
	Protein linguistics \|[mdash]\| a grammar for modular protein assembly? [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 1. (01 January 2006), pp. 68-73. by Mario Gimona posted to protein_gramman protein_design by jwm on 2009-09-18 10:05:52 as along with 2 people marcio mikaelhuss
	Triblock Protein Copolymers Forming Supramolecular Nanotapes and pH-Responsive Gels [My Copy] Macromolecules, Vol. 42, No. 4. (24 February 2009), pp. 1002-1009. by Aernout A. Martens, Giuseppe Portale, Marc W. T. Werten, et al.Renko J. de Vries, Gerrit Eggink, Martien A. Cohen Stuart, Frits A. de Wolf posted to protein_design block_copolymer by devries to the group Renko de Vries papers on 2009-09-02 14:46:43 as
	Statistical theory for protein combinatorial libraries. packing interactions, backbone flexibility, and the sequence variability of a main-chain structure1 [My Copy] Journal of Molecular Biology, Vol. 306, No. 3. (23 February 2001), pp. 607-628. by Hidetoshi Kono, Jeffery G. Saven posted to protein_design by jwm on 2009-08-24 13:20:45 as along with 3 people kgutwin dfgreen blackbart
	Computer search algorithms in protein modification and design. [My Copy] Current opinion in structural biology, Vol. 8, No. 4. (August 1998), pp. 471-475. by J. R. Desjarlais, N. D. Clarke posted to protein_design by jwm on 2009-08-24 13:17:02 as
	Construction and characterization of a manganese-binding site in cytochrome c peroxidase: towards a novel manganese peroxidase [My Copy] Chemistry & Biology, Vol. 4, No. 3. (March 1997), pp. 215-221. by B. Yeung posted to protein_design by jwm on 2009-08-24 13:14:39 as
	Protein Design Provides Lead(II) Ion Biosensors for Imaging Molecular Fluxes around Red Blood Cells† [My Copy] Biochemistry, Vol. 48, No. 2. (20 January 2009), pp. 462-470. by Vivekanand S. Shete, David E. Benson posted to protein_design by jwm on 2009-08-24 13:13:05 as along with 1 person vivekanand
	Identifying important structural characteristics of arsenic resistance proteins by using designed three-stranded coiled coils. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 29. (17 July 2007), pp. 11969-11974. by Debra S. Touw, Christer E. Nordman, Jeanne A. Stuckey, Vincent L. Pecoraro posted to protein_design by jwm on 2009-08-24 13:11:44 as
	Size-Selective Olefin Hydrogenation by a Pd Nanocluster Provided in an Apo-Ferritin Cage13 [My Copy] Angewandte Chemie International Edition, Vol. 43, No. 19. (2004), pp. 2527-2530. by Takafumi Ueno, Masako Suzuki, Toshiaki Goto, Tomoharu Matsumoto, Kuniaki Nagayama, Yoshihito Watanabe posted to protein_design by jwm on 2009-08-24 13:10:39 as
	Construction of a Novel Redox Protein by Rational Design: Conversion of a Disulfide Bridge into a Mononuclear Iron−Sulfur Center† [My Copy] Biochemistry, Vol. 37, No. 20. (1 May 1998), pp. 7070-7076. by David E. Benson, Michael S. Wisz, Wentian Liu, Homme W. Hellinga posted to protein_design by jwm on 2009-08-24 13:08:46 as
	Biomimetic Synthesis of a H2 Catalyst Using a Protein Cage Architecture [My Copy] Nano Letters, Vol. 5, No. 11. (1 November 2005), pp. 2306-2309. by Z. Varpness, J. W. Peters, M. Young, T. Douglas posted to protein_design by jwm on 2009-08-24 13:06:59 as
	Engineering A Uranyl-Specific Binding Protein from NikR13 [My Copy] Angewandte Chemie International Edition, Vol. 48, No. 13. (2009), pp. 2339-2341. by Seraphine v, Hande Boyaci, Hao Chen, Mark p, Chuan He posted to protein_design by jwm on 2009-08-24 13:05:45 as along with 1 person and 1 group sobolevnrm baker-group
	A Search for Energy Minimized Sequences of Proteins [My Copy] PLoS ONE, Vol. 4, No. 8. (19 August 2009), e6684. by Anupam N. Jha, G. K. Ananthasuresh, Saraswathi Vishveshwara posted to structure protein_design by phoenixzxl on 2009-08-19 02:16:34 as along with 1 person zwang
	Protein design on computers. Five new proteins: Shpilka, Grendel, Fingerclasp, Leather, and Aida. [My Copy] Proteins, Vol. 12, No. 2. (February 1992), pp. 105-110. by C. Sander, G. Vriend, F. Bazan, et al.A. Horovitz, H. Nakamura, L. Ribas, A. V. Finkelstein, A. Lockhart, R. Merkl, L. J. Perry posted to protein_design tjph by timhubbard on 2009-07-11 19:36:26 as
	Design of therapeutic proteins with enhanced stability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 29. (21 July 2009), pp. 11937-11942. by Naresh Chennamsetty, Vladimir Voynov, Veysel Kayser, Bernhard Helk, Bernhardt L. Trout posted to protein_design by phoenixzxl on 2009-07-09 06:24:02 as along with 5 people guhjy biomcgary marti edws zwang
	Computational design of protein-protein interactions. [My Copy] Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 91-97. by Tanja Kortemme, David Baker posted to protein_design by qluo on 2009-07-08 13:31:46 as along with 7 people bmduggan lna jwm bicko hmk cjeans jteyra
	An analysis of protein domain linkers: their classification and role in protein folding. [My Copy] Protein Eng, Vol. 15, No. 11. (November 2002), pp. 871-879. by R. A. George, J. Heringa posted to protein_design structural_bioinformatics by jwm on 2009-04-30 16:16:56 as along with 5 people and 1 group taikoo carlosjavierna Einat madhadron IrinaMoreira structural_bioinformatics
	Design of protein-interaction specificity gives selective bZIP-binding peptides [My Copy] Nature, Vol. 458, No. 7240. (16 April 2009), pp. 859-864. by Gevorg Grigoryan, Aaron W. Reinke, Amy E. Keating posted to coiled_coil protein_design specificity structure_aided by phoenixzxl on 2009-04-16 07:43:56 as along with 7 people kgutwin carlk kevinchannon pablocarb twatanab absterga jbhiatt
	Protein promiscuity and its implications for biotechnology [My Copy] Nature Biotechnology, Vol. 27, No. 2. (09 February 2009), pp. 157-167. by Irene Nobeli, Angelo D. Favia, Janet M. Thornton posted to protein protein_design by dbikard on 2009-02-12 08:49:14 as along with 5 people and 1 group bdessailly guhjy pablocarb pauldobson renatomilani Orengo Group Journal Picks
	Rational stabilization of enzymes by computational redesign of surface charge-charge interactions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (5 February 2009) by Alexey V V. Gribenko, Mayank M M. Patel, Jiajing Liu, Scott A A. McCallum, Chunyu Wang, George I I. Makhatadze posted to protein_design by barry to the group structural_bioinformatics on 2009-02-09 06:41:14 as along with 3 people and 2 groups sobolevnrm grahamc amishp baker-group McCammon
	Optimal Sequence Selection in Proteins of Known Structure by Simulated Evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 91, No. 13. (21 June 1994), pp. 5803-5807. by H. W. Hellinga, F. M. Richards posted to protein_design by jwm on 2009-02-05 12:47:40 as along with 2 people dfgreen msuarezdiez
	Rational design of a calcium-binding protein. [My Copy] Journal of the American Chemical Society, Vol. 125, No. 20. (21 May 2003), pp. 6165-6171. by W. Yang, L. M. Jones, L. Isley, et al.Y. Ye, H. W. Lee, A. Wilkins, Z. R. Liu, H. W. Hellinga, R. Malchow, M. Ghazi, J. J. Yang posted to protein_design by jwm on 2009-01-28 19:21:41 as
	Early Protein Evolution: Building Domains from Ligand-binding Polypeptide Segments [My Copy] Journal of Molecular Biology, Vol. 363, No. 2. (20 October 2006), pp. 460-468. by Lutz Riechmann, Greg Winter posted to directed_evolution protein_design by jwm on 2009-01-21 15:08:04 as along with 2 people and 2 groups barry cjeans structural_bioinformatics Bioinformatics
	Computationally designed libraries of fluorescent proteins evaluated by preservation and diversity of function. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 1. (2 January 2007), pp. 48-53. by T. P. Treynor, C. L. Vizcarra, D. Nedelcu, S. L. Mayo posted to protein_design by msuarezdiez on 2009-01-13 15:31:31 as
	Rotamer Libraries in the 21st Century [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 4. (1 August 2002), pp. 431-440. by R. Dunbrack posted to protein_design by msuarezdiez on 2009-01-07 16:46:24 as along with 6 people and 5 groups aqeel carlosjavierna apaydin barry joergkurtwegner LamBras structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	Algorithm for backrub motions in protein design [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i196-204. by Ivelin Georgiev, Daniel Keedy, Jane S. Richardson, David C. Richardson, Bruce R. Donald posted to alternatives backbone backrub code data protein_design protein_structure by hmk on 2008-12-25 22:07:11 as along with 2 people dfgreen jwm
	Using Engineered Scaffold Interactions to Reshape MAP Kinase Pathway Signaling Dynamics [My Copy] Science, Vol. 319, No. 5869. (14 March 2008), pp. 1539-1543. by Caleb J. Bashor, Noah C. Helman, Shude Yan, Wendell A. Lim posted to leucine_zipper protein_design protein_engineering regulatory_network signaling_network by yarikson on 2008-12-19 14:31:57 as along with 6 people kgutwin jsaucerman reidw lisa1 biomcgary melting
	X-Ray Structure and Designed Evolution of an Artificial Transfer Hydrogenase [My Copy] Angewandte Chemie International Edition, Vol. 47, No. 8. (2008), pp. 1400-1404. by Marc Creus, Anca Pordea, Thibaud Rossel, et al.Alessia Sardo, Christophe Letondor, Anita Ivanova, Isolde Letrong, Ronald e, Thomas r posted to protein_design by jwm on 2008-12-12 16:16:13 as along with 2 people amandalor daevans
	Computer-aided design of modular protein devices: Boolean AND gene activation [My Copy] Phys. Biol., Vol. 3, No. 4. (December 2006), 295. by H. Salis, Y. N. Kaznessis posted to modular_proteins protein_design by msuarezdiez on 2008-11-25 14:11:28 as along with 1 person madhadron
	Atomic Resolution Modeling of the Ferredoxin:[FeFe] Hydrogenase Complex from Chlamydomonas reinhardtii [My Copy] Biophys. J. (27 July 2007), biophysj.107.108589. by Christopher H. Chang, Paul W. King, Maria L. Ghirardi, Kwiseon Kim posted to hydrogenase protein_design protein_docking by msuarezdiez on 2008-11-25 12:33:09 as
	Protein design automation. [My Copy] Protein Sci, Vol. 5, No. 5. (May 1996), pp. 895-903. by B. I. Dahiyat, S. L. Mayo posted to protein_design protein_engineering by jwm on 2008-10-28 16:20:44 as along with 4 people and 1 group dfgreen shuns nknii carlk TCR_Signaling
	Surface Sites for Engineering Allosteric Control in Proteins [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442. by Jeeyeon Lee, Madhusudan Natarajan, Vishal C. Nashine, et al.Michael Socolich, Tina Vo, William P. Russ, Stephen J. Benkovic, Rama Ranganathan posted to allosteric correlated_mutations protein_design sca by barry to the group structural_bioinformatics on 2008-10-17 03:06:04 as along with 7 people and 3 groups sobolevnrm jbhiatt lflorez cactus marck i000 paulschlesinger baker-group McCammon Bioinformatics
	An object-oriented library for computational protein design. [My Copy] Journal of computational chemistry, Vol. 28, No. 14. (15 November 2007), pp. 2378-2388. by A. B. Chowdry, K. A. Reynolds, M. S. Hanes, M. Voorhies, N. Pokala, T. M. Handel posted to egad protein_design by jwm on 2008-10-13 15:43:34 as
	Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface. [My Copy] Journal of molecular biology, Vol. 382, No. 5. (24 October 2008), pp. 1265-1275. by K. A. Reynolds, M. S. Hanes, J. M. Thomson, et al.A. J. Antczak, J. M. Berger, R. A. Bonomo, J. F. Kirsch, T. M. Handel posted to egad protein_design by jwm on 2008-10-13 15:41:08 as along with 1 person higueruelo
	Computational Design of Calmodulin Mutants with up to 900-Fold Increase in Binding Specificity. [My Copy] Journal of molecular biology (27 September 2008) by Eliyahu Yosef, Regina Politi, Mee H H. Choi, Julia M M. Shifman posted to protein_design protein_protein by barry to the group McCammon on 2008-10-12 08:12:05 as along with 2 people msuarezdiez higueruelo
	Crystal structure of an extensively simplified variant of bovine pancreatic trypsin inhibitor in which over one-third of the residues are alanines. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (30 September 2008) by Mohammad Monirul M. Islam, Shihori Sohya, Keiichi Noguchi, Masafumi Yohda, Yutaka Kuroda posted to bpti protein_design protein_structure by barry to the group structural_bioinformatics on 2008-10-05 19:12:36 as along with 2 groups McCammon Bioinformatics
	Protein engineers turned evolutionists [My Copy] Nat Meth, Vol. 4, No. 12. (December 2007), pp. 991-994. by Sergio G. Peisajovich, Dan S. Tawfik posted to protein_design by dbikard on 2008-09-28 15:45:29 as along with 3 people cambray cjeans zwang

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protein_structure	139
crystallization	43
protein_sequence	41
protein_evolution	38
protein_dynamics	35
bioinf_methods	22
correlated_mutations	21
protein_folding	20
structure_comparison	16
ankyrin	15
rosetta	15
data	13
protein_protein	11
allosteric	10
protein_engineering	10
sequence_comparison	10
structural_bioinformatics	10
alternatives	9
de_novo_protein	9
ion_pairs	9
mn	9
electrostatics	8
nonviral_gene_delivery	8
protein_fragments	8
review	8
membrane2soluble	7
protein_packing	7
beta_sheet	6
comparative_model	6
core_residues	6
domain_motions	6
kinases	6
statistical_coupling_analysis	6
contacts	5
negative_design	5
scp	5
artificial_photosynthesis	4
bioinformatics	4
bpti	4
core_structure	4
entropy	4
protein	4
protein_ligand	4
protein_ligand_binding	4
rotamer_libraries	4
sca	4
structure_refinement	4
beta_propeller	3
bioengineering	3
cath	3
comparative_modeling	3
fad	3
free_energy	3
g_proteins	3
hsp70	3
hydrogenase	3
md_simulation	3
metalloenzyme	3
mn_enzyme	3
molecular_mechanics	3
nanoparticle	3
ntpases	3
p-loop	3
protein_stability	3
psii	3
residue_annotation	3
rotamer	3
sequence_structure	3
structure_flexible	3
structure_fragments	3
synthetic_biology	3
tesis	3
amin_acids	2
backrub	2
beta_solenoid	2
bioenergy	2
block_copolymers	2
egad	2
experimental	2
flexibility	2
graphical_models	2
journal_club	2
maquette	2
molecular_dynamics	2
nrps	2
polyelectrolyte_complexes	2
pr	2
prelim	2
protein-design	2
protein-sequence-design	2
protein_redesign	2
proteins	2
reaction_centre	2
reation_centre	2
specificity	2
statistical_physics	2
structure_aided	2
thesis	2
unfolded_state	2
web_tool	2

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