Tag protein_engineering [87 articles] Export

Recent papers classified by the tag protein_engineering.

	Enzyme engineering for enantioselectivity: from trial-and-error to rational design? [My Copy] Trends in biotechnology (11 November 2009) by Linda G. Otten, Frank Hollmann, Isabel W. Arends posted to protein_engineering by twatanab on 2009-12-21 08:25:05 as
	A minimal sequence code for switching protein structure and function [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 50. (15 December 2009), pp. 21149-21154. by Patrick A. Alexander, Yanan He, Yihong Chen, John Orban, Philip N. Bryan posted to protein_folding protein_engineering bioinformatics by sobolevnrm on 2009-12-15 21:45:09 as along with 6 people bpcusack paulymer rabio mijam TRHvidsten biehl
	An analysis of protein domain linkers: their classification and role in protein folding [My Copy] Protein Eng., Vol. 15, No. 11. (1 November 2002), pp. 871-879. by Richard A. George, Jaap Heringa posted to protein_engineering protein_domain protein linker by dbikard on 2009-12-02 16:47:39 as along with 6 people and 1 group jwm taikoo carlosjavierna Einat madhadron IrinaMoreira structural_bioinformatics
	Computer-aided design of functional protein interactions [My Copy] Nature Chemical Biology In Nat Chem Biol, Vol. 5, No. 11. (19 October 2009), pp. 797-807. by Daniel J. Mandell, Tanja Kortemme posted to protein_engineering protein_design protein interface interactions in-silico function by pablocarb on 2009-11-04 14:55:17 as along with 6 people and 3 groups barry aalibes ahmetbakan robertrentzsch cchang flbarroso McCammon Orengo Group Journal Picks Chang group
	Potential for Using Histidine Tags in Purification of Proteins at Large Scale [My Copy] Chemical Engineering & Technology, Vol. 28, No. 11. (2005), pp. 1306-1314. by V. Gaberc-Porekar, V. Menart posted to wave research_purposes protocols protein_engineering processing metal_ions metal_ion insect culture cell bioreactor bio bag affinity_chromatography by oliverguntli on 2009-11-02 14:04:30 as
	A comparative analysis of the equilibrium dynamics of a designed protein inferred from NMR, X-ray, and computations. [My Copy] Proteins, Vol. 77, No. 4. (December 2009), pp. 927-939. by Lin Liu, Leonardus M. Koharudin, Angela M. Gronenborn, Ivet Bahar posted to quasiharmonic_models protein_engineering nmr by sobolevnrm on 2009-10-31 00:58:20 as along with 2 people ahmetbakan apaydin
	Computational design of affinity and specificity at protein–protein interfaces [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 4. (29 August 2009), pp. 458-463. by John Karanicolas, Brian Kuhlman posted to protein_engineering protein-protein_interactions by sobolevnrm on 2009-10-14 12:25:51 as along with 4 people bmduggan VGreiff higueruelo barry
	An epistatic ratchet constrains the direction of glucocorticoid receptor evolution [My Copy] Nature, Vol. 461, No. 7263. (24 September 2009), pp. 515-519. by Jamie T. Bridgham, Eric A. Ortlund, Joseph W. Thornton posted to structure_and_function reversibility protein_structure_and_function protein_evolution protein_engineering phenotypes mutations life_history_evolution evolutionary_changes empirical_evidence biologists by docv on 2009-10-07 13:58:24 as along with 9 people and 1 group venancio merpublic bpcusack cmzmasek jjray zwang stajich Annab stevanspringer Mycology
	Expanding the repertoire of biofuel alternatives through metabolic pathway evolution. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 4. (27 January 2009), pp. 965-966. by Mattheos A. Koffas posted to protein_engineering metabolic_engineering biofuel by Vincent_Rouilly on 2009-10-01 21:09:42 as along with 3 people NathanDunn renatomilani welschra
	Protein engineering in designing tailored enzymes and microorganisms for biofuels production [My Copy] Current Opinion in Biotechnology (05 August 2009) by Fei Wen, Nikhil U. Nair, Huimin Zhao posted to review protein_engineering cellulases biofuels by Vincent_Rouilly on 2009-09-30 16:42:04 as
	Fabricating genetically engineered high-power lithium-ion batteries using multiple virus genes. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5930. (22 May 2009), pp. 1051-1055. by Yun Jung, Hyunjung Yi, Woo-Jae J. Kim, et al.Kisuk Kang, Dong Soo, Michael S. Strano, Gerbrand Ceder, Angela M. Belcher posted to protein_engineering phage by jwm on 2009-09-18 18:42:13 as along with 5 people absterga jessopher jbhiatt renatomilani gblissard
	Creating a bifunctional protein by insertion of beta-lactamase into the maltodextrin-binding protein. [My Copy] Nature biotechnology, Vol. 15, No. 12. (November 1997), pp. 1276-1279. by J. M. Betton, J. P. Jacob, M. Hofnung, J. K. Broome-Smith posted to protein_engineering by jwm on 2009-09-18 18:34:52 as
	Assessing computational methods for predicting protein stability upon mutation: good on average but not in the details [My Copy] Protein Engineering, Design and Selection, Vol. 22, No. 9. (1 September 2009), pp. 553-560. by Vladimir Potapov, Mati Cohen, Gideon Schreiber posted to protein_stability protein_engineering computational_prediction_of_stability by twatanab on 2009-08-26 01:35:15 as
	Programming cells by multiplex genome engineering and accelerated evolution [My Copy] Nature, Vol. 460, No. 7257. (26 July 2009), pp. 894-898. by Harris H. Wang, Farren J. Isaacs, Peter A. Carr, et al.Zachary Z. Sun, George Xu, Craig R. Forest, George M. Church posted to systems_engineering systems_biology synthetic_biology protein_engineering mutation metabolism homologous_recombination genome evolution e_coli directional_selection designed_mutations cellular_reprogramming by biomcgary on 2009-08-12 21:38:51 as along with 13 people and 2 groups abhishek_tiwari TorstenWaldminghaus jdoconnell dswan Annab badi druvus dayjm pkonings zwang phoenixzxl djkt dbikard Journal picks Synthetic Biology
	Synthetic protein scaffolds provide modular control over metabolic flux [My Copy] Nature Biotechnology, Vol. 27, No. 8. (02 August 2009), pp. 753-759. by John E. Dueber, Gabriel C. Wu, G. Reza Malmirchegini, et al.Tae S. Moon, Christopher J. Petzold, Adeeti V. Ullal, Kristala L. J. Prather, Jay D. Keasling posted to enzyme metabolism modularity module protein-protein_interaction protein_engineering regulatory_network scaffold_protein by biomcgary on 2009-08-07 17:32:12 as along with 6 people abhishek_tiwari dbikard grahamc phoenixzxl kevinchannon jdoconnell
	Design of therapeutic proteins with enhanced stability. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 29. (21 July 2009), pp. 11937-11942. by Naresh Chennamsetty, Vladimir Voynov, Veysel Kayser, Bernhard Helk, Bernhardt L. Trout posted to aggregation protein_engineering by biomcgary on 2009-07-16 21:42:38 as along with 5 people guhjy marti phoenixzxl edws zwang
	Protein design in biological networks: from manipulating the input to modifying the output [My Copy] Protein Engineering, Design and Selection (2 July 2009), gzp032. by Almer M. Van der Sloot, Christina Kiel, Luis Serrano, Francois Stricher posted to network protein_engineering synthetic_biology by Vincent_Rouilly on 2009-07-02 14:11:45 as
	The rosettazyme: A synthetic cellulosome. [My Copy] Journal of biotechnology (23 June 2009) by Shigenobu Mitsuzawa, Hiromi Kagawa, Yifen Li, Suzanne L. Chan, Chad D. Paavola, Jonathan D. Trent posted to thermo_tolerant protein_engineering cellulosome cellulase biofuel by twatanab on 2009-07-01 02:50:54 as along with 2 people Winzer neils
	Directed enzyme evolution via small and effective neutral drift libraries [My Copy] Nature Methods, Vol. 5, No. 11. (19 October 2008), pp. 939-942. by Rinkoo D. Gupta, Dan S. Tawfik posted to protein_engineering neutral_drift_library enzyme_evolution by twatanab on 2009-06-22 10:21:01 as along with 2 people cambray jbhiatt
	Orthogonal, Spectroscopic High-throughput Screening of Laccase-catalyzed p-Cresol Oxidation. [My Copy] Combinatorial chemistry & high throughput screening, Vol. 12, No. 7. (1 August 2009), pp. 678-689. by Komandoor E. Achyuthan, Jaime L. McClain, Dominic Raj posted to protein_engineering laccase high_throughput_screening by twatanab on 2009-06-19 02:49:28 as
	Motif-directed flexible backbone design of functional interactions [My Copy] Protein Science, Vol. 18, No. 6. (2009), pp. 1293-1305. by James J. Havranek, David Baker posted to protein_dna protein_engineering by aalibes on 2009-06-05 15:25:11 as along with 1 person anna_yershova
	Thermophilic Adaptation of Proteins [My Copy] Critical Reviews in Biochemistry and Molecular Biology, Vol. 36, No. 1. (2001), pp. 39-106. by Rein Sterner, Wolfgang Liebl posted to thermo_tolerant protein_engineering by twatanab on 2009-05-07 03:24:52 as
	Engineering A Uranyl-Specific Binding Protein from NikR13 [My Copy] Angewandte Chemie International Edition, Vol. 48, No. 13. (2009), pp. 2339-2341. by Seraphine v, Hande Boyaci, Hao Chen, Mark p, Chuan He posted to metalloregulation nikr protein_engineering by sobolevnrm to the group baker-group on 2009-04-27 11:36:42 as along with 1 person jwm
	Design of protein-interaction specificity gives selective bZIP-binding peptides [My Copy] Nature, Vol. 458, No. 7240. (16 April 2009), pp. 859-864. by Gevorg Grigoryan, Aaron W. Reinke, Amy E. Keating posted to protein_engineering bzip_binding_peptide by twatanab on 2009-04-17 02:31:35 as along with 7 people kgutwin carlk kevinchannon pablocarb absterga phoenixzxl jbhiatt
	Coding-sequence determinants of gene expression in Escherichia coli. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 255-258. by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin posted to recombinant protein_engineering coding_sequence_determinant by twatanab on 2009-04-16 03:59:17 as along with 35 people and 1 group daveGerrard pmalkus codonusage balabu yyfwuhan dbikard kinestetika samgj dswan bpcusack emptyhb sameersoi dpsuslo8 anwazo Vincent_Rouilly kintoki erel10 michaelbarton fenghezi VGreiff ramanuja austin coela polivares rpatward lizbiogen jdbowes operon jasontsai absterga jbhiatt jjray kshundyak zwang friendpine BergmanLab
	Engineering by homologous recombination: exploring sequence and function within a conserved fold. [My Copy] Curr Opin Struct Biol (18 September 2007) by Martina N N. Carbone, Frances H H. Arnold posted to homology_recombination protein_engineering by Vincent_Rouilly on 2009-04-15 12:18:36 as along with 3 people guhjy Einat allPowerde
	Design and engineering of an O2 transport protein [My Copy] Nature, Vol. 458, No. 7236. (19 March 2009), pp. 305-309. by Ronald L. Koder, J. L. Ross Anderson, Lee A. Solomon, Konda S. Reddy, Christopher C. Moser, P. Leslie Dutton posted to hemoglobin protein_engineering synthetic_biology by biomcgary on 2009-03-31 01:25:31 as along with 5 people kinestetika omc11 operon chigle absterga
	Statistical Theory of Protein Sequence Design by Random Mutation [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Arnab Bhattacherjee, Parbati Biswas posted to bioinformatics protein_engineering structure_prediction by sobolevnrm to the group baker-group on 2009-03-28 16:16:11 as
	Chapter 7 A Computational Approach for the Rational Design of Stable Proteins and EnzymesOptimization of Surface Charge–Charge Interactions [My Copy] In Computer Methods, Part A, Vol. 454 (2009), pp. 175-211. by Katrina L. Schweiker, George I. Makhatadze posted to electrostatics protein_engineering protein_folding solvation by sobolevnrm to the group baker-group on 2009-03-25 11:32:47 as
	Rational stabilization of enzymes by computational redesign of surface charge-charge interactions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (5 February 2009) by Alexey V V. Gribenko, Mayank M M. Patel, Jiajing Liu, Scott A A. McCallum, Chunyu Wang, George I I. Makhatadze posted to electrostatics protein_engineering protein_folding by sobolevnrm to the group baker-group on 2009-03-22 14:03:30 as along with 3 people and 2 groups grahamc amishp barry structural_bioinformatics McCammon
	A thermostable triple mutant of pyranose 2-oxidase from Trametes multicolor with improved properties for biotechnological applications. [My Copy] Biotechnology journal (16 March 2009) by Oliver Spadiut, Katrin Radakovits, Ines Pisanelli, et al.Clara Salaheddin, Montarop Yamabhai, Tien-Chye C. Tan, Christina Divne, Dietmar Haltrich posted to thermo_tolerant pyranose_oxidase protein_engineering by twatanab on 2009-03-19 00:20:56 as
	Computational design of a Zn2+ receptor that controls bacterial gene expression. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20. (30 September 2003), pp. 11255-11260. by M. A. Dwyer, L. L. Looger, H. W. Hellinga posted to protein_engineering by jwm on 2009-01-28 19:21:22 as
	Using Engineered Scaffold Interactions to Reshape MAP Kinase Pathway Signaling Dynamics [My Copy] Science, Vol. 319, No. 5869. (14 March 2008), pp. 1539-1543. by Caleb J. Bashor, Noah C. Helman, Shude Yan, Wendell A. Lim posted to leucine_zipper protein_design protein_engineering regulatory_network signaling_network by yarikson on 2008-12-19 14:31:57 as along with 6 people kgutwin jsaucerman reidw lisa1 biomcgary melting
	Protein design automation. [My Copy] Protein Sci, Vol. 5, No. 5. (May 1996), pp. 895-903. by B. I. Dahiyat, S. L. Mayo posted to protein_design protein_engineering by jwm on 2008-10-28 16:20:44 as along with 4 people and 1 group dfgreen shuns nknii carlk TCR_Signaling
	Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases. [My Copy] Protein science : a publication of the Protein Society, Vol. 5, No. 6. (June 1996), pp. 1001-1013. by A. C. Wallace, R. A. Laskowski, J. M. Thornton posted to protein_engineering protein_template_matching by jwm on 2008-10-27 11:33:59 as
	Rapid "Open-Source" Engineering of Customized Zinc-Finger Nucleases for Highly Efficient Gene Modification [My Copy] Molecular Cell, Vol. 31, No. 2. (25 July 2008), pp. 294-301. by Morgan L. Maeder, Stacey Thibodeau-Beganny, Anna Osiak, et al.David A. Wright, Reshma M. Anthony, Magdalena Eichtinger, Tao Jiang, Jonathan E. Foley, Ronnie J. Winfrey, Jeffrey A. Townsend, Erica Unger-Wallace, Jeffry D. Sander, Felix Müller-Lerch, Fengli Fu, Joseph Pearlberg, Carl Göbel, Justin p Dassie, Shondra M. Pruett-Miller, Matthew H. Porteus, Dennis C. Sgroi, John A. Iafrate, Drena Dobbs, Mccray, Toni Cathomen, Daniel F. Voytas, Keith J. Joung posted to directed_evolution protein_engineering zinc_finger by jwm on 2008-09-11 10:11:13 as along with 4 people sebastien_vigneau rschulz guhjy aalibes
	Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins [My Copy] Nature, Vol. 453, No. 7199. (25 May 2008), pp. 1266-1270. by Nathan H. Joh, Andrew Min, Salem Faham, et al.Julian P. Whitelegge, Duan Yang, Virgil L. Woods, James U. Bowie posted to protein_engineering protein_folding structure by sobolevnrm to the group baker-group on 2008-07-24 12:12:58 as along with 1 person hc5428
	Kemp elimination catalysts by computational enzyme design [My Copy] Nature, Vol. 453, No. 7192. (19 March 2008), pp. 190-195. by Daniela Rothlisberger, Olga Khersonsky, Andrew M. Wollacott, et al.Lin Jiang, Jason DeChancie, Jamie Betker, Jasmine L. Gallaher, Eric A. Althoff, Alexandre Zanghellini, Orly Dym, Shira Albeck, Kendall N. Houk, Dan S. Tawfik, David Baker posted to protein_engineering structure_prediction by sobolevnrm to the group baker-group on 2008-06-27 12:04:48 as along with 12 people and 2 groups barmak7282 baiaixi whitead qbin1304 fralium Diego_Prada apaydin jwm msuarezdiez austin cactus neils Jiang Research Group Biocatalysis and Biotransformation
	Rationally designed mutations convert de novo amyloid-like fibrils into monomeric beta-sheet proteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 5. (5 March 2002), pp. 2760-2765. by W. Wang, M. H. Hecht posted to beta_helix beta_solenoid protein_design protein_engineering by jwm on 2008-06-20 13:31:03 as
	Design and synthesis of alpha-helical peptides and mimetics. [My Copy] Org Biomol Chem, Vol. 5, No. 22. (21 November 2007), pp. 3577-3585. by J. Garner, M. M. Harding posted to protein_engineering by jwm on 2008-06-19 17:32:40 as along with 1 person higueruelo
	From the Cover: Outer membrane protein G: Engineering a quiet pore for biosensing [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6272-6277. by Min Chen, Syma Khalid, Mark S. Sansom, Hagan Bayley posted to biomembranes ion_channels protein_engineering by sobolevnrm to the group baker-group on 2008-06-13 11:39:50 as along with 1 person marck
	Determination of nonligand amino acids critical to [4Fe-4S]2+/+ assembly in ferredoxin maquettes. [My Copy] Biochemistry, Vol. 38, No. 32. (10 August 1999), pp. 10442-10448. by S. E. Mulholland, B. R. Gibney, F. Rabanal, P. L. Dutton posted to iron_sulfur_cluster protein_engineering by jwm on 2008-06-06 13:19:41 as
	Rational design of a mononuclear metal site into the archaeal Rieske-type protein scaffold. [My Copy] The Journal of biological chemistry, Vol. 280, No. 10. (11 March 2005), pp. 9129-9134. by T. Iwasaki, A. Kounosu, Y. Tao, et al.Z. Li, J. E. Shokes, N. J. Cosper, T. Imai, A. Urushiyama, R. A. Scott posted to protein_engineering by jwm on 2008-06-06 13:19:24 as
	Synthesis of the H-cluster framework of iron-only hydrogenase [My Copy] Nature, Vol. 433, No. 7026. (10 February 2005), pp. 610-613. by Cedric Tard, Xiaoming Liu, Saad K. Ibrahim, et al.Maurizio Bruschi, Luca D. De Gioia, Sian C. Davies, Xin Yang, Lai-Sheng Wang, Gary Sawers, Christopher J. Pickett posted to protein_engineering by jwm on 2008-06-06 13:18:54 as
	Disulfide by DesignTM: a computational method for the rational design of disulfide bonds in proteins [My Copy] Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1852-1853. by Alan A. Dombkowski posted to disulfide protein_engineering by jwm on 2008-05-29 17:14:00 as
	Computer-aided modeling of structure stabilizing disulfide bonds in recombinant human interferon-[gamma] [My Copy] Pharmaceutica Acta Helvetiae, Vol. 71, No. 1. (June 1996), pp. 37-44. by Gero Günther, Till Fechteler, Carmen Villmann, Hayssam Zakaria, Dietmar Schomburg, Bernd Otto posted to disulfide protein_engineering by jwm on 2008-05-19 11:13:39 as
	Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 9. (1 May 2007), pp. 1099-1105. by Richard E. Smith, Simon C. Lovell, David F. Burke, Rinaldo W. Montalvao, Tom L. Blundell posted to protein_engineering structural_bioinformatics by jwm on 2008-05-19 11:09:42 as along with 3 people bicko semin carlk
	MODIP revisited: re-evaluation and refinement of an automated procedure for modeling of disulfide bonds in proteins [My Copy] Protein Eng., Vol. 16, No. 3. (1 March 2003), pp. 187-193. by Vardhan S. Dani, C. Ramakrishnan, Raghavan Varadarajan posted to disulfide protein_engineering by jwm on 2008-05-19 11:08:53 as
	Stereochemical modeling of disulfide bridges. Criteria for introduction into proteins by site-directed mutagenesis [My Copy] Protein Eng., Vol. 3, No. 2. (1 November 1989), pp. 95-103. by R. Sowdhamini, N. Srinivasan, Brian Shoichet, Daniel V. Santi, C. Ramakrishnan, P. Balaram posted to disulfide protein_engineering by jwm on 2008-05-19 11:06:36 as
	Engineering Protein Allostery: 1.05 Å Resolution Structure and Enzymatic Properties of a Na+-activated Trypsin [My Copy] Journal of Molecular Biology, Vol. 378, No. 3. (2 May 2008), pp. 666-672. by Michael J. Page, Christopher J. Carrell, Enrico Di Cera posted to allostery protein_engineering protein-ligand_interactions thrombin by sobolevnrm to the group baker-group on 2008-05-03 12:32:51 as

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protein_design	10
protein_folding	9
electrostatics	8
synthetic_biology	8
bioinformatics	5
disulfide	5
biomembranes	4
protein-ligand_interactions	4
sbw_buildingblocks	4
signallingcircuits	4
solvation	4
structure	4
structure_prediction	4
evolution	3
gpcr	3
gpcr_structure	3
modular_redesign	3
nanoparticle	3
protein-protein_interactions	3
thermo_tolerant	3
allostery	2
artificial_photosynthesis	2
biofuel	2
chimeric_adaptors	2
crystallization	2
fold_space	2
ion_channels	2
metabolism	2
metalloregulation	2
nikr	2
protein	2
protein_sequence	2
protein_structure	2
regulatory_network	2
review	2
scfv	2
structural_bioinformatics	2
thrombin	2
adaptive_landscape	1
affinity_chromatography	1
aggregation	1
bag	1
beta_solenoid	1
bioenergy	1
biofuels	1
biologists	1
bioreactor	1
cell	1
cellular_reprogramming	1
cellulase	1
cellulases	1
cellulosome	1
coding_sequence_determinant	1
computational_prediction_of_stability	1
culture	1
designed_mutations	1
directional_selection	1
e_coli	1
enzyme_evolution	1
epistasis	1
evolutionary_changes	1
function	1
homology_recombination	1
in-silico	1
insect	1
inteins	1
interactions	1
iron_sulfur_cluster	1
laccase	1
linker	1
meganucleases	1
membrane_proteins	1
metabolic_engineering	1
metal_ion	1
metal_ions	1
module	1
mutation	1
mutations	1
network	1
neutral_drift_library	1
nmr	1
phenotypes	1
protein-protein_interaction	1
protein_denovo_design	1
protein_dna	1
protein_domain	1
protein_evolution	1
protein_structure_and_function	1
protein_template_matching	1
quasiharmonic_models	1
recombinant	1
research_purposes	1
reviews	1
splicing	1
stability	1
structure_and_function	1
systems_biology	1
systems_engineering	1
wave	1
xtal_software	1

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