Tag protein_folding [at least 200 articles] Export

Recent papers classified by the tag protein_folding.

	Enthalpic Contribution to Protein Stability: Insights from Atom-Based Calculations and Statistical Mechanics [My Copy] In Advances in Protein Chemistry Volume 47, Vol. 47 (1995), pp. 231-306. by T. Lazaridis, G. Archontis, M. Karplus posted to protein_folding free-energy by Diego_Prada on 2009-11-27 19:52:33 as along with 1 person flbarroso
	Estimation of protein folding probability from equilibrium simulations [My Copy] The Journal of Chemical Physics, Vol. 122, No. 18. (2005), 184901. by Francesco Rao, Giovanni Settanni, Enrico Guarnera, Amedeo Caflisch posted to transition_states protein_folding free-energy cmn by Diego_Prada on 2009-11-26 18:21:55 as
	First-principles calculation of the folding free energy of a three-helix bundle protein [My Copy] Science, Vol. 269, No. 5222. (21 July 1995), pp. 393-396. by E. M. Boczko, Cl Brooks posted to protein_folding methods by Diego_Prada on 2009-11-25 16:48:19 as
	FROM FOLDING THEORIES TO FOLDING PROTEINS: A Review and Assessment of Simulation Studies of Protein Folding and Unfolding [My Copy] Annual Review of Physical Chemistry, Vol. 52, No. 1. (2001), pp. 499-535. by Joan E. Shea, Charles L. Brooks posted to review protein_folding methods free-energy by Diego_Prada on 2009-11-25 16:26:15 as along with 3 people scampos fjc1 allmensch
	The Protein Folding Problem [My Copy] Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 289-316. by Ken A. Dill, S. Banu Ozkan, M. Scott Shell, Thomas R. Weikl posted to review protein_folding by Diego_Prada on 2009-11-25 15:55:41 as along with 7 people dfdong siggi84 qluo doktornoe flbarroso zwang dsekaran
	Protein-Folding Dynamics: Overview of Molecular Simulation Techniques [My Copy] Annual Review of Physical Chemistry, Vol. 58, No. 1. (2007), pp. 57-83. by Harold A. Scheraga, Mey Khalili, Adam Liwo posted to review protein_folding protein_dynamics by Diego_Prada on 2009-11-25 15:52:00 as along with 3 people dgront choonpeng adilson_mohr
	Absolute comparison of simulated and experimental protein-folding dynamics [My Copy] Nature, Vol. 420, No. 6911. (20 October 2002), pp. 102-106. by Christopher D. Snow, Houbi Nguyen, Vijay S. Pande, Martin Gruebele posted to protein_folding md_history by Diego_Prada on 2009-11-25 15:37:49 as along with 3 people doktornoe fjc1 samjlord
	Common Structural Transitions in Explicit-Solvent Simulations of Villin Headpiece Folding [My Copy] Vol. 97, No. 8. (21 October 2009), pp. 2338-2347. by Peter L. Freddolino, Klaus Schulten posted to protein_folding by Diego_Prada on 2009-11-18 16:31:47 as
	Monitoring Local Unfolding of Bovine Serum Albumin During Denaturation Using Steady-State and Time-Resolved Fluorescence Spectroscopy [My Copy] Journal of Fluorescence by Denisio Togashi, Alan Ryder, Domhnall O’Shaughnessy posted to protein_folding fluorescence by alexknight on 2009-11-18 10:02:59 as
	Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 29. (21 July 2009), pp. 11837-11844. by Hoi S. Chung, John M. Louis, William A. Eaton posted to protein_folding fret by yanjiang on 2009-11-11 18:49:27 as along with 5 people and 1 group doktornoe quanwang apaydin paulschlesinger samjlord moernerlab
	Simultaneous prediction of protein folding and docking at high resolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18978-18983. by Rhiju Das, Ingemar AndrÃ©, Yang Shen, et al.Yibing Wu, Alexander Lemak, Sonal Bansal, Cheryl H. Arrowsmith, Thomas Szyperski, David Baker posted to protein_folding docking by apaydin on 2009-11-11 16:27:06 as along with 4 people ahmetbakan paulschlesinger ibuch zwang
	Folding of glycoproteins: toward understanding the biophysics of the glycosylation code [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 5. (03 October 2009), pp. 524-533. by Dalit Shental-Bechor, Yaakov Levy posted to review protein_folding by sobolevnrm on 2009-10-26 11:35:54 as along with 1 person phoenixzxl
	Coexistence of Flexibility and Stability of Proteins: An Equation of State [My Copy] PLoS ONE, Vol. 4, No. 10. (9 October 2009), e7296. by Marina de Leeuw, Shlomi Reuveni, Joseph Klafter, Rony Granek posted to stability protein_folding mathematical_model flexibility by jjray on 2009-10-15 16:44:14 as
	The proteostasis boundary in misfolding diseases of membrane traffic [My Copy] FEBS Letters, Vol. 583, No. 16. (20 August 2009), pp. 2639-2646. by Darren M. Hutt, Evan T. Powers, William E. Balch posted to unfolded_protein_response signal_transduction proteostasis protein_folding membrane_traffic heat_shock_response chaperones by eudominguezmartin on 2009-10-08 17:49:23 as
	Entropy in protein folding and in protein—protein interactions [My Copy] Current Opinion in Structural Biology, Vol. 7, No. 2. (April 1997), pp. 215-221. by G. Brady posted to protein_structure_database protein_protein_interactions protein_folding estimates entropy conformational_entropy by krapnik on 2009-10-06 13:04:04 as along with 1 person flbarroso
	Bioengineered silk protein-based gene delivery systems [My Copy] Biomaterials, Vol. 30, No. 29. (04 October 2009), pp. 5775-5784. by Keiji Numata, Balajikarthick Subramanian, Heather A. Currie, David L. Kaplan posted to protein_folding protein_design nonviral_gene_delivery by devries on 2009-10-06 11:44:42 as
	Filamentous Artificial Virus from a Self-Assembled Discrete Nanoribbon13 [My Copy] Angewandte Chemie International Edition, Vol. 47, No. 24. (2008), pp. 4525-4528. by Yong-beom Lim, Eunji Lee, You-Rim Yoon, Myeong S. Lee, Myongsoo Lee posted to viruses protein_folding protein_design nonviral_gene_delivery by devries on 2009-10-05 12:47:07 as along with 1 person armaquim
	Modulation of the thermal stability of β-lactoglobulin by transglutaminase treatment [My Copy] European Food Research and Technology, Vol. 225, No. 5. (1 September 2007), pp. 649-652. by Chuan-He Tang, Ching-Yung Ma posted to protein_folding enzymatic_protein_crosslinking by devries on 2009-10-04 18:26:35 as
	Stochastic dynamics of model proteins on a directed graph. [My Copy] Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 79, No. 6 Pt 1. (June 2009) by Lorenzo Bongini, Lapo Casetti, Roberto Livi, Antonio Politi, Alessandro Torcini posted to protein_folding graph_representation by apaydin on 2009-10-04 18:04:40 as
	Nonnative Electrostatic Interactions Can Modulate Protein Folding: Molecular Dynamics with a Grain of Salt [My Copy] Journal of Molecular Biology, Vol. 393, No. 2. (23 October 2009), pp. 527-542. by Ariel Azia, Yaakov Levy posted to protein_folding electrostatics by sobolevnrm on 2009-10-01 13:13:56 as along with 1 person dicksmit
	Protein folding studied by single-molecule FRET [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 1. (February 2008), pp. 16-26. by B. Schuler, W. Eaton posted to protein_folding fret fcs by yanjiang on 2009-09-28 19:08:07 as along with 5 people yxue haisent joseolucha jorgelamboy alexknight
	Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 5. (30 January 2007), pp. 1528-1533. by Kusai A. Merchant, Robert B. Best, John M. Louis, Irina V. Gopich, William A. Eaton posted to simulation protein_folding fret fcs by yanjiang on 2009-09-28 19:04:09 as along with 5 people carlosjavierna quanwang joseolucha choonpeng toerst
	Single-Molecule Measurement of Protein Folding Kinetics [My Copy] Science, Vol. 301, No. 5637. (29 August 2003), pp. 1233-1235. by Everett A. Lipman, Benjamin Schuler, Olgica Bakajin, William A. Eaton posted to protein_folding fret fcs by yanjiang on 2009-09-28 19:01:44 as along with 1 person toerst
	Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy [My Copy] Nature, Vol. 419, No. 6908. (17 October 2002), pp. 743-747. by Benjamin Schuler, Everett A. Lipman, William A. Eaton posted to protein_folding fret fcs energy_surface by yanjiang on 2009-09-28 18:53:33 as along with 5 people doktornoe kjell toerst FBerkemeier yusdi
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted to proteins protein_folding protein_dynamics by Diego_Prada on 2009-09-19 15:42:18 as along with 15 people and 3 groups xdeupi A_Coletta_Thesis karbak apaydin barry lillekatt baaden lna dgront allmensch daevans rsantana jlh64 biehl rph Structural Biology Group TorVergata structural_bioinformatics Bioinformatics
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted to proteins protein_folding protein_dynamics md free-energy by Diego_Prada on 2009-09-19 15:39:20 as along with 19 people and 1 group victorclaessen saravan xdeupi viktor21614 ruvido barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor baker-group
	Chromophore Packing Leads to Hysteresis in GFP [My Copy] Journal of Molecular Biology, Vol. 392, No. 1. (11 September 2009), pp. 218-227. by Benjamin T. Andrews, Melinda Roy, Patricia A. Jennings posted to protein_folding hysteresis gfp bistability by jjray on 2009-08-26 15:32:12 as
	Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000475. by Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau, Joost Schymkowitz posted to protein_folding predictive_biology hsp70 chaperone aggregation by biomcgary on 2009-08-21 21:08:47 as along with 2 people klexa pansapiens
	Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins [My Copy] Nat Struct Mol Biol, Vol. 16, No. 7. (14 July 2009), pp. 684-690. by Jianmin Gao, Daryl A. Bosco, Evan T. Powers, Jeffery W. Kelly posted to structure solvation protein_folding nonpolar electrostatics by sobolevnrm on 2009-08-18 12:37:06 as along with 1 person and 2 groups barry structural_bioinformatics McCammon
	New Monte Carlo algorithms for protein folding. [My Copy] Current opinion in structural biology, Vol. 9, No. 2. (April 1999), pp. 177-183. by U. H. Hansmann, Y. Okamoto posted to monte_carlo protein_folding by apaydin on 2009-08-05 07:26:50 as along with 6 people flbarroso dgront rabio insectopalo iantunbridge nigham
	Application of the multiensemble sampling to the equilibrium folding of proteins. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 15. (1 August 2006), pp. 1832-1837. by Hyeon S. Son, Seung-Yeon Y. Kim, Jooyoung Lee, Kyu-Kwang K. Han posted to equilibrium protein_folding by apaydin on 2009-08-05 07:25:22 as
	Computing protein stabilities from their chain lengths. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 26. (30 June 2009), pp. 10649-10654. by Kingshuk Ghosh, Ken A. Dill posted to bioinformatics protein_folding by sobolevnrm on 2009-07-23 13:10:08 as along with 4 people kintoki apaydin carlosjavierna kevinchannon
	Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution [My Copy] Biology Direct, Vol. 3, No. 1. (07 October 2008), 40. by Maxim Wolf, Yuri Wolf, Eugene Koonin posted to evolution_rate evolutionary_constraint gene_expression protein protein_folding protein_structure by biomcgary on 2009-07-21 22:36:52 as along with 1 person gjuggler
	The anatomy and taxonomy of protein structure. [My Copy] Advances in protein chemistry, Vol. 34 (1981), pp. 167-339. by J. S. Richardson posted to chapt_amino amino protein_folding proteins by Diego_Prada on 2009-07-18 18:21:51 as along with 1 person nikkiwithers
	An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell [My Copy] Mol Syst Biol, Vol. 5 (16 June 2009) by Yunchen Gong, Yoshito Kakihara, Nevan Krogan, et al.Jack Greenblatt, Andrew Emili, Zhaolei Zhang, Walid A. Houry posted to chaperone endoplasmic_reticulum heat_shock hydrophobic_patch mass_spectroscopy network nucleus protein-protein_interaction protein_folding by biomcgary on 2009-07-16 18:16:11 as along with 6 people venancio parnell reyez roys kiekyon TRHvidsten
	Structure-based Calculation of the Equilibrium Folding Pathway of Proteins. Correlation with Hydrogen Exchange Protection Factors [My Copy] Journal of Molecular Biology, Vol. 262, No. 5. (11 October 1996), pp. 756-772. by V. Hilser posted to conformational_ensemble corex gibbs protein_flexibility protein_folding by fl on 2009-07-15 09:45:35 as along with 1 person carlescorbi
	Direct single-molecule observation of a protein living in two opposed native structures. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 25. (23 June 2009), pp. 10153-10158. by Yann Gambin, Alexander Schug, Edward A. Lemke, et al.Jason J. Lavinder, Allan Chris C. Ferreon, Thomas J. Magliery, José N. Onuchic, Ashok A. Deniz posted to protein_folding single_molecule by sobolevnrm on 2009-07-14 13:27:10 as along with 6 people and 1 group dbikard yyfwuhan quanwang cnegron paulschlesinger samjlord moernerlab
	Effective use of sequence correlation and conservation in fold recognition. [My Copy] Journal of molecular biology, Vol. 293, No. 5. (12 November 1999), pp. 1221-1239. by O. Olmea, B. Rost, A. Valencia posted to correlated_mutation protein_folding by qluo on 2009-07-08 13:45:50 as along with 2 people gbart cjeans
	Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct? [My Copy] Protein science : a publication of the Protein Society, Vol. 6, No. 3. (1 March 1997), pp. 676-688. by J. Skolnick, L. Jaroszewski, A. Kolinski, A. Godzik posted to pair_potential protein_folding by qluo on 2009-07-08 13:41:51 as along with 2 people krapnik iantunbridge
	NMR structures of two designed proteins with high sequence identity but different fold and function [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (23 September 2008), pp. 14412-14417. by Yanan He, Yihong Chen, Patrick Alexander, Philip N. Bryan, John Orban posted to protein_folding by qluo on 2009-07-02 15:30:17 as along with 8 people bqcao diod martainn wilbur markchen zwang reyez kentsis
	Refined kinetic transition networks for the GB1 hairpin peptide [My Copy] Phys. Chem. Chem. Phys., Vol. 11, No. 18. (2009), pp. 3341-3354. by Joanne M. Carr, David J. Wales posted to beta-hairpin first_passage free-energy hexapeptide protein_dynamics protein_folding qha reaction_paths short-peptides transition_path transition_states by Diego_Prada on 2009-07-02 11:55:15 as
	Protein folding on rugged energy landscapes: Conformational diffusion on fractal networks [My Copy] (24 Jun 2009) by Gregg Lois, J. Blawzdziewicz, Corey S. O'Hern posted to cmn coarse-grained complex_systems first_passage free-energy hp_model networks protein_dynamics protein_folding proteins reaction_paths transition_path by Diego_Prada on 2009-06-25 16:27:33 as
	Protein folding by zipping and assembly. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 29. (17 July 2007), pp. 11987-11992. by S. B. Ozkan, G. A. Wu, J. D. Chodera, K. A. Dill posted to gb protein_folding by onufriev on 2009-06-21 05:39:45 as along with 4 people aqeel wouterboomsma cdeane ARobson
	Multiple probes are required to explore and control the rugged energy landscape of RNA hairpins. [My Copy] Journal of the American Chemical Society, Vol. 130, No. 5. (6 February 2008), pp. 1538-1539. by C. Hyeon, D. Thirumalai posted to beta-hairpin free-energy pca protein_folding by Diego_Prada on 2009-06-15 16:05:55 as
	Chaperonin overexpression promotes genetic variation and enzyme evolution. [My Copy] Nature, Vol. 459, No. 7247. (4 June 2009), pp. 668-673. by Nobuhiko Tokuriki, Dan S. Tawfik posted to bacteria e_coli evolution protein_folding stability by jjray on 2009-06-03 21:33:24 as along with 3 people yyfwuhan absterga zwang
	An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state. [My Copy] Protein Sci, Vol. 13, No. 2. (February 2004), pp. 400-411. by C. Zhang, S. Liu, H. Zhou, Y. Zhou posted to based c-alpha function protein_folding protein_protein_binding scoring by apaydin on 2009-05-25 12:34:37 as along with 4 people flbarroso j3xucite mirzazadeh kgutwin
	Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility [My Copy] Journal of Biological Chemistry, Vol. 284, No. 20. (15 May 2009), pp. 13285-13289. by C. Nick Pace, Gerald R. Grimsley, J. Martin Scholtz posted to electrostatics pka protein_folding review solvation by sobolevnrm to the group baker-group on 2009-05-11 12:27:23 as along with 6 people and 2 groups pjkiley scampos klexa nanonan barry paulschlesinger structural_bioinformatics McCammon
	Solvent molecules bridge the mechanical unfolding transition state of a protein. [My Copy] Proc Natl Acad Sci U S A, Vol. 105, No. 9. (4 March 2008), pp. 3185-3190. by L. Dougan, G. Feng, H. Lu, J. M. Fernandez posted to force_clamp force_spectroscopy protein_folding titin by alexknight on 2009-04-30 15:32:07 as along with 2 people choonpeng kallberg
	Mechanical Biochemistry of Proteins One Molecule at a Time [My Copy] Journal of Biological Chemistry, Vol. 283, No. 11. (14 March 2008), pp. 6617-6621. by Andres F. Oberhauser, Mariano CarriÃ³n-VÃ¡zquez posted to force_spectroscopy protein_folding by alexknight on 2009-04-30 15:30:25 as along with 2 people ramalldf choonpeng
	Signatures of hydrophobic collapse in extended proteins captured with force spectroscopy. [My Copy] Proc Natl Acad Sci U S A (30 April 2007) by Kirstin A A. Walther, Frauke Gräter, Lorna Dougan, Carmen L L. Badilla, Bruce J J. Berne, Julio M M. Fernandez posted to titin protein_folding force_clamp by alexknight on 2009-04-30 15:27:51 as along with 1 person choonpeng

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protein_structure	120
review	37
solvation	33
electrostatics	25
bioinformatics	24
protein_dynamics	23
protein_design	20
protein_evolution	20
evolution	18
publications	18
implicit_solvation	17
interaction_hierarchy	17
molecular_dynamics	17
biophysics	16
contact_order	15
free-energy	15
gb	13
computational_biology	12
molecular_simulation	12
simulation	12
contacts	10
pka	10
contact_maps	9
folding	9
fret	9
md_simulation	9
phi_value_analysis	9
protein_fragments	9
rate_determination	9
structure	9
clustering	8
protein_engineering	8
proteins	8
kinetics	7
pfold	7
protein	7
short-peptides	7
single_molecule	7
unfolded_state	7
entropy	6
go_model	6
hexapeptide	6
hp_model	6
multiscale	6
networks	6
protein-ligand_interactions	6
protein_function	6
protein_sequence	6
protein_threading	6
software	6
structural_genomics	6
nmr	5
protein_stability	5
aggregation	4
amyloids	4
comparative_modeling	4
energy_landscapes	4
experimental_methodology	4
fcs	4
free_energy	4
graphical_models	4
misfolding	4
monte_carlo	4
nonviral_gene_delivery	4
nucleic_acids	4
ph	4
phi_analysis	4
sequence_structure	4
structure_prediction	4
thermodynamics	4
allostery	3
beta-hairpin	3
chaperone	3
comparative_model	3
contact_prediction	3
core_structure	3
correlated_mutations	3
disease	3
domain_swapping	3
electrostatic	3
fluorescence	3
fold_space	3
force_field	3
graph_theory	3
hydrogen-bond	3
journal	3
methods	3
model_assessment	3
pca	3
protein_ligand_binding	3
protein_universe	3
rate_prediction	3
sequence_comparison	3
signal_transduction	3
stability	3
statistical_coupling_analysis	3
statistical_mechanics	3
structural_bioinformatics	3
structure_comparison	3
tocopy	3

Tag protein_folding [at least 200 articles] Export

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