Tag protein_folding [at least 200 articles] Export

Recent papers classified by the tag protein_folding.

	Folding of glycoproteins: toward understanding the biophysics of the glycosylation code [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 5. (03 October 2009), pp. 524-533. by Dalit Shental-Bechor, Yaakov Levy posted to review protein_folding by sobolevnrm on 2009-10-26 11:35:54 as along with 1 person phoenixzxl
	Coexistence of Flexibility and Stability of Proteins: An Equation of State [My Copy] PLoS ONE, Vol. 4, No. 10. (9 October 2009), e7296. by Marina de Leeuw, Shlomi Reuveni, Joseph Klafter, Rony Granek posted to stability protein_folding mathematical_model flexibility by jjray on 2009-10-15 16:44:14 as
	The proteostasis boundary in misfolding diseases of membrane traffic [My Copy] FEBS Letters, Vol. 583, No. 16. (20 August 2009), pp. 2639-2646. by Darren M. Hutt, Evan T. Powers, William E. Balch posted to unfolded_protein_response signal_transduction proteostasis protein_folding membrane_traffic heat_shock_response chaperones by eudominguezmartin on 2009-10-08 17:49:23 as
	Entropy in protein folding and in protein—protein interactions [My Copy] Current Opinion in Structural Biology, Vol. 7, No. 2. (April 1997), pp. 215-221. by G. Brady posted to protein_structure_database protein_protein_interactions protein_folding estimates entropy conformational_entropy by krapnik on 2009-10-06 13:04:04 as along with 1 person flbarroso
	Bioengineered silk protein-based gene delivery systems [My Copy] Biomaterials, Vol. 30, No. 29. (04 October 2009), pp. 5775-5784. by Keiji Numata, Balajikarthick Subramanian, Heather A. Currie, David L. Kaplan posted to protein_folding protein_design nonviral_gene_delivery by devries on 2009-10-06 11:44:42 as
	Filamentous Artificial Virus from a Self-Assembled Discrete Nanoribbon13 [My Copy] Angewandte Chemie International Edition, Vol. 47, No. 24. (2008), pp. 4525-4528. by Yong-beom Lim, Eunji Lee, You-Rim Yoon, Myeong S. Lee, Myongsoo Lee posted to viruses protein_folding protein_design nonviral_gene_delivery by devries on 2009-10-05 12:47:07 as
	Modulation of the thermal stability of β-lactoglobulin by transglutaminase treatment [My Copy] European Food Research and Technology, Vol. 225, No. 5. (1 September 2007), pp. 649-652. by Chuan-He Tang, Ching-Yung Ma posted to protein_folding enzymatic_protein_crosslinking by devries on 2009-10-04 18:26:35 as
	Stochastic dynamics of model proteins on a directed graph. [My Copy] Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 79, No. 6 Pt 1. (June 2009) by Lorenzo Bongini, Lapo Casetti, Roberto Livi, Antonio Politi, Alessandro Torcini posted to protein_folding graph_representation by apaydin on 2009-10-04 18:04:40 as
	Nonnative Electrostatic Interactions Can Modulate Protein Folding: Molecular Dynamics with a Grain of Salt [My Copy] Journal of Molecular Biology, Vol. 393, No. 2. (23 October 2009), pp. 527-542. by Ariel Azia, Yaakov Levy posted to protein_folding electrostatics by sobolevnrm on 2009-10-01 13:13:56 as along with 1 person dicksmit
	Protein folding studied by single-molecule FRET [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 1. (February 2008), pp. 16-26. by B. Schuler, W. Eaton posted to protein_folding fret fcs by yanjiang on 2009-09-28 19:08:07 as along with 5 people yxue haisent joseolucha jorgelamboy alexknight
	Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 5. (30 January 2007), pp. 1528-1533. by Kusai A. Merchant, Robert B. Best, John M. Louis, Irina V. Gopich, William A. Eaton posted to simulation protein_folding fret fcs by yanjiang on 2009-09-28 19:04:09 as along with 5 people carlosjavierna quanwang joseolucha choonpeng toerst
	Single-Molecule Measurement of Protein Folding Kinetics [My Copy] Science, Vol. 301, No. 5637. (29 August 2003), pp. 1233-1235. by Everett A. Lipman, Benjamin Schuler, Olgica Bakajin, William A. Eaton posted to protein_folding fret fcs by yanjiang on 2009-09-28 19:01:44 as along with 1 person toerst
	Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy [My Copy] Nature, Vol. 419, No. 6908. (17 October 2002), pp. 743-747. by Benjamin Schuler, Everett A. Lipman, William A. Eaton posted to protein_folding fret fcs energy_surface by yanjiang on 2009-09-28 18:53:33 as along with 5 people doktornoe kjell toerst FBerkemeier yusdi
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted to proteins protein_folding protein_dynamics by Diego_Prada on 2009-09-19 15:42:18 as along with 15 people and 3 groups xdeupi A_Coletta_Thesis karbak apaydin barry lillekatt baaden lna dgront allmensch daevans rsantana jlh64 biehl rph Structural Biology Group TorVergata structural_bioinformatics Bioinformatics
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted to proteins protein_folding protein_dynamics md free-energy by Diego_Prada on 2009-09-19 15:39:20 as along with 17 people and 1 group xdeupi viktor21614 ruvido barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor baker-group
	Chromophore Packing Leads to Hysteresis in GFP [My Copy] Journal of Molecular Biology, Vol. 392, No. 1. (11 September 2009), pp. 218-227. by Benjamin T. Andrews, Melinda Roy, Patricia A. Jennings posted to protein_folding hysteresis gfp bistability by jjray on 2009-08-26 15:32:12 as
	Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000475. by Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau, Joost Schymkowitz posted to protein_folding predictive_biology hsp70 chaperone aggregation by biomcgary on 2009-08-21 21:08:47 as along with 2 people klexa pansapiens
	Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins [My Copy] Nat Struct Mol Biol, Vol. 16, No. 7. (14 July 2009), pp. 684-690. by Jianmin Gao, Daryl A. Bosco, Evan T. Powers, Jeffery W. Kelly posted to structure solvation protein_folding nonpolar electrostatics by sobolevnrm on 2009-08-18 12:37:06 as along with 1 person and 2 groups barry structural_bioinformatics McCammon
	Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 29. (21 July 2009), pp. 11837-11844. by Hoi S. Chung, John M. Louis, William A. Eaton posted to protein_folding by apaydin on 2009-08-17 15:13:16 as along with 4 people and 1 group doktornoe quanwang paulschlesinger samjlord moernerlab
	New Monte Carlo algorithms for protein folding. [My Copy] Current opinion in structural biology, Vol. 9, No. 2. (April 1999), pp. 177-183. by U. H. Hansmann, Y. Okamoto posted to monte_carlo protein_folding by apaydin on 2009-08-05 07:26:50 as along with 6 people flbarroso dgront rabio insectopalo iantunbridge nigham
	Application of the multiensemble sampling to the equilibrium folding of proteins. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 15. (1 August 2006), pp. 1832-1837. by Hyeon S. Son, Seung-Yeon Y. Kim, Jooyoung Lee, Kyu-Kwang K. Han posted to equilibrium protein_folding by apaydin on 2009-08-05 07:25:22 as
	Computing protein stabilities from their chain lengths. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 26. (30 June 2009), pp. 10649-10654. by Kingshuk Ghosh, Ken A. Dill posted to bioinformatics protein_folding by sobolevnrm on 2009-07-23 13:10:08 as along with 4 people kintoki apaydin carlosjavierna kevinchannon
	Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution [My Copy] Biology Direct, Vol. 3, No. 1. (07 October 2008), 40. by Maxim Wolf, Yuri Wolf, Eugene Koonin posted to evolution_rate evolutionary_constraint gene_expression protein protein_folding protein_structure by biomcgary on 2009-07-21 22:36:52 as along with 1 person gjuggler
	The anatomy and taxonomy of protein structure. [My Copy] Advances in protein chemistry, Vol. 34 (1981), pp. 167-339. by J. S. Richardson posted to chapt_amino amino protein_folding proteins by Diego_Prada on 2009-07-18 18:21:51 as along with 1 person nikkiwithers
	An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell [My Copy] Mol Syst Biol, Vol. 5 (16 June 2009) by Yunchen Gong, Yoshito Kakihara, Nevan Krogan, et al.Jack Greenblatt, Andrew Emili, Zhaolei Zhang, Walid A. Houry posted to chaperone endoplasmic_reticulum heat_shock hydrophobic_patch mass_spectroscopy network nucleus protein-protein_interaction protein_folding by biomcgary on 2009-07-16 18:16:11 as along with 6 people venancio parnell reyez roys kiekyon TRHvidsten
	Structure-based Calculation of the Equilibrium Folding Pathway of Proteins. Correlation with Hydrogen Exchange Protection Factors [My Copy] Journal of Molecular Biology, Vol. 262, No. 5. (11 October 1996), pp. 756-772. by V. Hilser posted to conformational_ensemble corex gibbs protein_flexibility protein_folding by fl on 2009-07-15 09:45:35 as along with 1 person carlescorbi
	Direct single-molecule observation of a protein living in two opposed native structures. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 25. (23 June 2009), pp. 10153-10158. by Yann Gambin, Alexander Schug, Edward A. Lemke, et al.Jason J. Lavinder, Allan Chris C. Ferreon, Thomas J. Magliery, José N. Onuchic, Ashok A. Deniz posted to protein_folding single_molecule by sobolevnrm on 2009-07-14 13:27:10 as along with 6 people and 1 group dbikard yyfwuhan quanwang cnegron paulschlesinger samjlord moernerlab
	Effective use of sequence correlation and conservation in fold recognition. [My Copy] Journal of molecular biology, Vol. 293, No. 5. (12 November 1999), pp. 1221-1239. by O. Olmea, B. Rost, A. Valencia posted to correlated_mutation protein_folding by qluo on 2009-07-08 13:45:50 as along with 2 people gbart cjeans
	Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct? [My Copy] Protein science : a publication of the Protein Society, Vol. 6, No. 3. (1 March 1997), pp. 676-688. by J. Skolnick, L. Jaroszewski, A. Kolinski, A. Godzik posted to pair_potential protein_folding by qluo on 2009-07-08 13:41:51 as along with 2 people krapnik iantunbridge
	NMR structures of two designed proteins with high sequence identity but different fold and function [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (23 September 2008), pp. 14412-14417. by Yanan He, Yihong Chen, Patrick Alexander, Philip N. Bryan, John Orban posted to protein_folding by qluo on 2009-07-02 15:30:17 as along with 8 people bqcao diod martainn wilbur markchen zwang reyez kentsis
	Refined kinetic transition networks for the GB1 hairpin peptide [My Copy] Phys. Chem. Chem. Phys., Vol. 11, No. 18. (2009), pp. 3341-3354. by Joanne M. Carr, David J. Wales posted to beta-hairpin first_passage free-energy hexapeptide protein_dynamics protein_folding qha reaction_paths short-peptides transition_path transition_states by Diego_Prada on 2009-07-02 11:55:15 as
	Protein folding on rugged energy landscapes: Conformational diffusion on fractal networks [My Copy] (24 Jun 2009) by Gregg Lois, J. Blawzdziewicz, Corey S. O'Hern posted to cmn coarse-grained complex_systems first_passage free-energy hp_model networks protein_dynamics protein_folding proteins reaction_paths transition_path by Diego_Prada on 2009-06-25 16:27:33 as
	Protein folding by zipping and assembly. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 29. (17 July 2007), pp. 11987-11992. by S. B. Ozkan, G. A. Wu, J. D. Chodera, K. A. Dill posted to gb protein_folding by onufriev on 2009-06-21 05:39:45 as along with 4 people aqeel wouterboomsma cdeane ARobson
	The protein folding problem. [My Copy] Annual review of biophysics, Vol. 37, No. 1. (2008), pp. 289-316. by Ken A. Dill, S. Banu Ozkan, M. Scott Shell, Thomas R. Weikl posted to protein_folding by qluo on 2009-06-15 17:01:24 as along with 5 people siggi84 doktornoe flbarroso zwang dsekaran
	Multiple probes are required to explore and control the rugged energy landscape of RNA hairpins. [My Copy] Journal of the American Chemical Society, Vol. 130, No. 5. (6 February 2008), pp. 1538-1539. by C. Hyeon, D. Thirumalai posted to beta-hairpin free-energy pca protein_folding by Diego_Prada on 2009-06-15 16:05:55 as
	Chaperonin overexpression promotes genetic variation and enzyme evolution. [My Copy] Nature, Vol. 459, No. 7247. (4 June 2009), pp. 668-673. by Nobuhiko Tokuriki, Dan S. Tawfik posted to bacteria e_coli evolution protein_folding stability by jjray on 2009-06-03 21:33:24 as along with 3 people yyfwuhan absterga zwang
	An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state. [My Copy] Protein Sci, Vol. 13, No. 2. (February 2004), pp. 400-411. by C. Zhang, S. Liu, H. Zhou, Y. Zhou posted to based c-alpha function protein_folding protein_protein_binding scoring by apaydin on 2009-05-25 12:34:37 as along with 4 people flbarroso j3xucite mirzazadeh kgutwin
	Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility [My Copy] Journal of Biological Chemistry, Vol. 284, No. 20. (15 May 2009), pp. 13285-13289. by C. Nick Pace, Gerald R. Grimsley, J. Martin Scholtz posted to electrostatics pka protein_folding review solvation by sobolevnrm to the group baker-group on 2009-05-11 12:27:23 as along with 6 people and 2 groups pjkiley scampos klexa nanonan barry paulschlesinger structural_bioinformatics McCammon
	Solvent molecules bridge the mechanical unfolding transition state of a protein. [My Copy] Proc Natl Acad Sci U S A, Vol. 105, No. 9. (4 March 2008), pp. 3185-3190. by L. Dougan, G. Feng, H. Lu, J. M. Fernandez posted to force_clamp force_spectroscopy protein_folding titin by alexknight on 2009-04-30 15:32:07 as along with 2 people choonpeng kallberg
	Mechanical biochemistry of proteins one molecule at a time. [My Copy] J Biol Chem (14 January 2008) by Andres F F. Oberhauser, Mariano Carrión-Vázquez posted to force_spectroscopy protein_folding by alexknight on 2009-04-30 15:30:25 as along with 1 person choonpeng
	Signatures of hydrophobic collapse in extended proteins captured with force spectroscopy. [My Copy] Proc Natl Acad Sci U S A (30 April 2007) by Kirstin A A. Walther, Frauke Gräter, Lorna Dougan, Carmen L L. Badilla, Bruce J J. Berne, Julio M M. Fernandez posted to force_clamp protein_folding by alexknight on 2009-04-30 15:27:51 as along with 1 person choonpeng
	Folding Pathways and Rates for the Three-Stranded β-Sheet Peptide Beta3s using Discrete Path Sampling [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 29. (1 July 2008), pp. 8760-8769. by Joanne M. Carr, David J. Wales posted to beta-hairpin free-energy hexapeptide protein_folding short-peptides by Diego_Prada on 2009-04-30 12:10:50 as
	HOW WELL CAN SIMULATION PREDICT PROTEIN FOLDING KINETICS AND THERMODYNAMICS? [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 34, No. 1. (29 October 2005), pp. 43-69. by Christopher D. Snow, Eric J. Sorin, Young M. Rhee, Vijay S. Pande posted to md methods protein_folding statistical_mechanics stochastic_processes by Diego_Prada on 2009-04-30 12:01:14 as along with 9 people amphibina flbarroso doktornoe dgront blackbart allmensch saunders evanse toerst
	Prediction of chain flexibility in proteins [My Copy] Naturwissenschaften, Vol. 72, No. 4. (1 April 1985), pp. 212-213. by P. A. Karplus, G. E. Schulz posted to gnm protein_dynamics protein_folding proteins by Diego_Prada on 2009-04-30 11:55:17 as
	Painting protein misfolding in the cell in real time with an atomic-scale brush [My Copy] Trends in Biotechnology, Vol. 23, No. 3. (March 2005), pp. 157-162. by S. Cavagnero, L. Jungbauer posted to aggregation fluorescence protein_folding by jdoconnell on 2009-04-20 20:59:15 as
	Topological methods for exploring low-density states in biomolecular folding pathways [My Copy] The Journal of Chemical Physics, Vol. 130, No. 14. (2009), 144115. by Yuan Yao, Jian Sun, Xuhui Huang, et al.Gregory R. Bowman, Gurjeet Singh, Michael Lesnick, Leonidas J. Guibas, Vijay S. Pande, Gunnar Carlsson posted to clustering energy_landscapes nucleic_acids protein_folding by sobolevnrm to the group baker-group on 2009-04-17 13:03:39 as
	Ubiquitylation in innate and adaptive immunity [My Copy] Nature, Vol. 458, No. 7237. (25 March 2009), pp. 430-437. by Vijay G. Bhoj, Zhijian J. Chen posted to protein_folding ubiquitin by jdoconnell on 2009-04-14 23:43:04 as
	Origin and function of ubiquitin-like proteins. [My Copy] Nature, Vol. 458, No. 7237. (26 March 2009), pp. 422-429. by M. Hochstrasser posted to protein_folding ubiquitin by jdoconnell on 2009-04-14 23:42:13 as along with 2 people guhjy catcremona
	Electrostatic effects on funneled landscapes and structural diversity in denatured protein ensembles [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 6. (10 February 2009), pp. 1796-1801. by Patrick Weinkam, Ekaterina V. Pletneva, Harry B. Gray, Jay R. Winkler, Peter G. Wolynes posted to denatured_state funnel protein_folding by apaydin on 2009-04-12 08:07:47 as along with 2 people and 1 group sobolevnrm sammmtha baker-group
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to protein_folding by jdoconnell on 2009-04-10 22:56:19 as along with 18 people and 3 groups anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k barry pablocarb ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang paulschlesinger structural_bioinformatics McCammon baker-group

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protein_structure	120
review	34
solvation	33
electrostatics	25
bioinformatics	24
protein_dynamics	22
protein_design	20
protein_evolution	20
evolution	18
publications	18
implicit_solvation	17
interaction_hierarchy	17
molecular_dynamics	17
biophysics	16
contact_order	15
free-energy	13
gb	13
computational_biology	12
molecular_simulation	12
simulation	12
contacts	10
pka	10
contact_maps	9
folding	9
md_simulation	9
phi_value_analysis	9
protein_fragments	9
rate_determination	9
structure	9
clustering	8
fret	8
protein_engineering	8
proteins	8
kinetics	7
pfold	7
protein	7
short-peptides	7
single_molecule	7
unfolded_state	7
entropy	6
go_model	6
hexapeptide	6
hp_model	6
multiscale	6
networks	6
protein-ligand_interactions	6
protein_function	6
protein_sequence	6
protein_threading	6
software	6
structural_genomics	6
nmr	5
protein_stability	5
aggregation	4
amyloids	4
comparative_modeling	4
energy_landscapes	4
experimental_methodology	4
fcs	4
free_energy	4
graphical_models	4
misfolding	4
monte_carlo	4
nonviral_gene_delivery	4
nucleic_acids	4
ph	4
phi_analysis	4
sequence_structure	4
structure_prediction	4
thermodynamics	4
allostery	3
beta-hairpin	3
chaperone	3
comparative_model	3
contact_prediction	3
core_structure	3
correlated_mutations	3
database	3
disease	3
domain_motions	3
domain_swapping	3
electrostatic	3
force_field	3
graph_theory	3
hydrogen-bond	3
journal	3
model_assessment	3
pca	3
prm	3
protein_ligand_binding	3
protein_universe	3
rate_prediction	3
sequence_comparison	3
signal_transduction	3
stability	3
statistical_coupling_analysis	3
statistical_mechanics	3
structural_bioinformatics	3
structure_comparison	3
tocopy	3

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