Tag protein_interactions [43 articles] Export

Recent papers classified by the tag protein_interactions.

	The Modular Organization of Protein Interactions in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (2 October 2009), e1000523. by José M. Peregrín-Alvarez, Xuejian Xiong, Chong Su, John Parkinson posted to protein_protein_interactions protein_interactions functional_modules 30-oct-09 by CorinYeats to the group Orengo Group Journal Picks on 2009-10-30 18:48:32 as along with 6 people and 1 group venancio biomcgary grahamc kiekyon poirel dswan Bioinformatics
	Proteins with greater influence on network dynamics evolve more slowly but are not more essential [My Copy] (20 Sep 2009) by Ryan N. Gutenkunst posted to protein_interactions network evolution by jjray on 2009-09-28 20:01:15 as
	Amplification and detection of single-molecule conformational fluctuation through a protein interaction network with bimodal distributions. [My Copy] The journal of physical chemistry. B, Vol. 113, No. 36. (10 September 2009), pp. 12375-12381. by Zhanghan Wu, Vlad Elgart, Hong Qian, Jianhua Xing posted to timescale protein_interactions network distribution conformational_dynamics biophysics by jjray on 2009-09-28 17:18:34 as
	Interaction between Intrinsically Disordered Proteins Frequently Occurs in a Human Protein–Protein Interaction Network [My Copy] Journal of Molecular Biology, Vol. 392, No. 5. (09 October 2009), pp. 1253-1265. by Kana Shimizu, Hiroyuki Toh posted to protein_interactions network intrinsic_protein_disorder by jjray on 2009-09-26 16:01:40 as along with 8 people bdessailly nzm ekotelnikova kiekyon tprpip higueruelo cabbagesofdoom reyez
	Predicting protein domain interactions from coevolution of conserved regions. [My Copy] Proteins, Vol. 67, No. 4. (1 June 2007), pp. 811-820. by Maricel G. Kann, Raja Jothi, Praveen F. Cherukuri, Teresa M. Przytycka posted to protein_nw_quality protein_interactions protein_domain_sequences by roys on 2009-09-16 21:43:28 as along with 2 people chica cjeans
	Correlation between gene expression profiles and protein-protein interactions within and across genomes [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2730-2738. by Nitin Bhardwaj, Hui Lu posted to yeast protein_interactions gene_expression e_coli by jjray on 2009-09-10 19:44:28 as along with 2 people and 1 group jperkins lfriedl kdl
	Intrinsic Protein Disorder and Interaction Promiscuity Are Widely Associated with Dosage Sensitivity [My Copy] Cell, Vol. 138, No. 1. (10 July 2009), pp. 198-208. by Tanya Vavouri, Jennifer I. Semple, Rosa Garcia-Verdugo, Ben Lehner posted to overexpression protein_interactions sensitivity by jjray on 2009-07-10 16:51:14 as along with 3 people daveGerrard kintoki psique
	Self-Organization of the Escherichia coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy [My Copy] PLoS Biol, Vol. 7, No. 6. (23 June 2009), e1000137. by Derek Greenfield, Ann L. McEvoy, Hari Shroff, et al.Gavin E. Crooks, Ned S. Wingreen, Eric Betzig, Jan Liphardt posted to bacteria chemotaxis e_coli protein_interactions signaling by jjray on 2009-07-01 17:10:58 as along with 4 people tomd66 schmidtm robfsouza dbikard
	Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size [My Copy] Mol Syst Biol, Vol. 4 (2008) by Jingshan Zhang, Sergei Maslov, Eugene I. Shakhnovich posted to biophysics gene_expression protein_interactions by jjray on 2009-03-27 20:59:50 as along with 7 people kiekyon TRHvidsten akraemer grahamc Ema zwang biehl
	Kinetics of Desolvation-Mediated Protein–Protein Binding [My Copy] Biophysical Journal, Vol. 78, No. 3. (1 March 2000), pp. 1094-1105. by C. Camacho posted to desolvation electrostatic folding kinetics noncovalent protein_folding protein_interactions specificity by yarikson on 2009-01-13 19:51:56 as along with 3 people itmeson csrocha ras
	Pharmacological interference with protein-protein interactions mediated by coiled-coil motifs. [My Copy] Handbook of experimental pharmacology, No. 186. (2008), pp. 461-482. by H. M. Strauss, S. Keller posted to book coiled_coil leucine_zipper pharmacology protein_interactions review snare by yarikson on 2008-12-19 16:35:43 as along with 2 people kgutwin cabbagesofdoom
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted to bioinformatics graphics methods protein protein_interactions visualization by stajich to the group Mycology on 2008-07-16 17:12:31 as along with 24 people and 1 group colmryan carlk saket diamantis yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani sebk rsantana OPIG
	The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. [My Copy] Nat Biotechnol, Vol. 22, No. 2. (February 2004), pp. 177-183. by H. Hermjakob, L. Montecchi-Palazzi, G. Bader, et al.J. Wojcik, L. Salwinski, A. Ceol, S. Moore, S. Orchard, U. Sarkans, C. von Mering, B. Roechert, S. Poux, E. Jung, H. Mersch, P. Kersey, M. Lappe, Y. Li, R. Zeng, D. Rana, M. Nikolski, H. Husi, C. Brun, K. Shanker, S. G. Grant, C. Sander, P. Bork, W. Zhu, A. Pandey, A. Brazma, B. Jacq, M. Vidal, D. Sherman, P. Legrain, G. Cesareni, I. Xenarios, D. Eisenberg, B. Steipe, C. Hogue, R. Apweiler posted to protein_interactions proteomics by lenov on 2008-04-28 16:48:25 as along with 6 people and 1 group allysonlister irenas balajis grahamc jmuhlich lpfernandes dbk-lab
	Discovering disease-genes by topological features in human protein-protein interaction network [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805. by J. Xu, Y. Li posted to bioinformatics disease protein_interactions by marcius to the group BioinfoCIPF on 2006-11-24 08:57:33 as along with 4 people and 1 group saket diamantis skhadar ealloza SGU-CIPF
	A protein interaction network for pluripotency of embryonic stem cells [My Copy] Nature by Jianlong Wang, Sridhar Rao, Jianlin Chu, et al.Xiaohua Shen, Dana N. Levasseur, Thorold W. Theunissen, Stuart H. Orkin posted to protein_interactions stem_cells systems_biology by marcius to the group BioinfoCIPF on 2006-11-23 11:04:53 as along with 7 people and 1 group tonamswish kentsis wnpx yeastyboy Ao_Li2007 iris_2001 tdmckee SGU-CIPF
	ProteinRNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2746-2752. by N. Morozova, J. Allers, Y. Shamoo posted to bioinformatics protein_interactions rna algorithms by marcius to the group SGU-CIPF on 2006-11-16 09:29:09 as along with 1 group BioinfoCIPF
	Spatial localization of ligand binding sites from electron current density surfaces calculated from NMR chemical shift perturbations. [My Copy] J Am Chem Soc, Vol. 124, No. 39. (2 October 2002), pp. 11758-11763. by M. A. McCoy, D. F. Wyss posted to experimental nmr protein_complexes protein_interactions by marcius on 2006-10-30 10:40:13 as along with 2 groups BioinfoCIPF SGU-CIPF
	Protein-protein interactions more conserved within species than across species. [My Copy] PLoS computational biology, Vol. 2, No. 7. (21 July 2006), e79. by S. Mika, B. Rost posted to algorithms evolution protein_domains protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:13:05 as along with 7 people and 1 group chica RebeccaHamer robfsouza jeremymiller chad_davis skhadar dquest BioinfoCIPF
	Structural Modeling of Protein Interactions by Analogy: Application to PSD-95 [My Copy] PLoS Computational Biology, Vol. preprint, No. 2006. (1 October 2006) by Dmitry Korkin, Fred P. Davis, Frank Alber, et al.Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B. Kennedy, Andrej Sali posted to algorithms comparative_docking comparative_modeling protein_domains protein_interactions by marcius on 2006-10-22 12:12:40 as along with 2 groups BioinfoCIPF SGU-CIPF
	The many faces of protein-protein interactions: A compendium of interface geometry. [My Copy] PLoS computational biology, Vol. 2, No. 9. (29 September 2006), e124. by Wan Kyu K. Kim, Andreas Henschel, Christof Winter, Michael Schroeder posted to algorithms databases protein_domains protein_interactions by marcius on 2006-10-22 12:12:00 as along with 10 people and 2 groups winterschlaefer zdai raik bicko chad_davis choonpeng Evangelia wilbur allmensch marck BioinfoCIPF SGU-CIPF
	Localization of protein-binding sites within families of proteins. [My Copy] Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360. by D. Korkin, F. P. Davis, A. Sali posted to bioinformatics comparative_docking protein_interactions by marcius on 2006-10-22 12:11:09 as along with 4 people and 4 groups barry tjimenez bicko wilbur structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Mapping protein-protein interactions in solution by NMR spectroscopy. [My Copy] Biochemistry, Vol. 41, No. 1. (8 January 2002), pp. 1-7. by E. R. Zuiderweg posted to nmr protein_interactions review by marcius on 2006-10-22 12:09:51 as along with 1 person and 2 groups dgruiz BioinfoCIPF SGU-CIPF
	Use of 19F NMR spectroscopy to screen chemical libraries for ligands that bind to proteins. [My Copy] Org Biomol Chem, Vol. 2, No. 5. (7 March 2004), pp. 725-731. by T. Tengel, T. Fex, H. Emtenas, F. Almqvist, I. Sethson, J. Kihlberg posted to ligand nmr protein_interactions by marcius on 2006-10-22 12:09:26 as along with 2 groups BioinfoCIPF SGU-CIPF
	Studies of protein-ligand interactions by NMR. [My Copy] Biochem Soc Trans, Vol. 31, No. Pt 5. (October 2003), pp. 1006-1009. by J. Clarkson, I. D. Campbell posted to nmr protein_interactions by marcius to the group SGU-CIPF on 2006-10-22 12:08:27 as along with 1 group BioinfoCIPF
	Protein-protein interaction analysis by nuclear magnetic resonance spectroscopy. [My Copy] Methods Mol Biol, Vol. 261 (2004), pp. 79-92. by G. Gao, J. G. Williams, S. L. Campbell posted to nmr protein_interactions by marcius to the group BioinfoCIPF on 2006-10-22 12:08:07 as along with 1 group SGU-CIPF
	Cell biology: brief encounters bolster contacts. [My Copy] Nature, Vol. 444, No. 7117. (16 November 2006), pp. 279-280. by Tom L. Blundell, Juan Fernández-Recio posted to protein_interactions review views by marcius on 2006-10-20 13:21:56 as along with 2 people and 2 groups ras bicko BioinfoCIPF SGU-CIPF
	Partial correlation coefficient between distance matrices as a new indicator of proteinprotein interactions [My Copy] Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2488-2492. by Sato, Tetsuya, Yamanishi, et al. Yoshihiro, Horimoto, Katsuhisa, Kanehisa, Minoru, Toh, Hiroyuki posted to bioinformatics interaction protein_interactions by marcius to the group SGU-CIPF on 2006-10-20 13:20:00 as along with 1 group BioinfoCIPF
	Global topological features of cancer proteins in the human interactome [My Copy] Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2291-2297. by Pall F. Jonsson, Paul A. Bates posted to bioinformatics cancer interactome networks protein-networks protein_interactions scale-free systems-biology by namtonthat on 2006-10-18 03:30:04 as along with 7 people and 2 groups frohike aalibes bicko marcius ealloza IbnBio dejori BioinfoCIPF SGU-CIPF
	The Many Faces of Protein–Protein Interactions: A Compendium of Interface Geometry [My Copy] PLoS Computational Biology, Vol. 2, No. 9. (1 September 2006), e124. by Wan K. Kim, Andreas Henschel, Christof Winter, Michael Schroeder posted to bioinformatics clustering protein_interactions by marcius to the group BioinfoCIPF on 2006-09-29 08:58:11 as along with 1 group SGU-CIPF
	Exploiting sequence and structure homologs to identify protein-protein binding sites. [My Copy] Proteins, Vol. 62, No. 3. (15 March 2006), pp. 630-640. by J. L. Chung, W. Wang, P. E. Bourne posted to bioinformatics evolution protein_interactions by marcius to the group SGU-CIPF on 2006-09-07 17:22:13 as along with 2 people and 1 group bicko ameetsoni BioinfoCIPF
	Equivalent binding sites reveal convergently evolved interaction motifs [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 550-555. by Andreas Henschel, Wan K. Kim, Michael Schroeder posted to bioinformatics evolution protein_domains protein_interactions by marcius on 2006-09-07 17:16:11 as along with 1 person and 2 groups nickolay BioinfoCIPF SGU-CIPF
	SCOPPI: a structural classification of protein-protein interfaces. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by Christof Winter, Andreas Henschel, Wan Kyu K. Kim, Michael Schroeder posted to protein_interactions servers structure by marcius to the group BioinfoCIPF on 2006-08-31 20:21:58 as along with 10 people and 3 groups winterschlaefer higueruelo sjcockell ana kuhn bicko chad_davis choonpeng Evangelia kintoki structural_bioinformatics Bioinformatics SGU-CIPF
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. [My Copy] Nature, Vol. 440, No. 7084. (30 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, José M. Peregrín-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted to protein_interactions by marcius to the group BioinfoCIPF on 2006-08-31 19:27:00 as along with 28 people and 4 groups paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl chad_davis balajis tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim Paccanaro Lab kdl EBI-regulation SGU-CIPF
	PIANA: protein interactions and network analysis [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 1015-1017. by Ramon Aragues, Daniel Jaeggi, Baldo Oliva posted to bioinformatics protein_interactions servers software by marcius to the group SGU-CIPF on 2006-04-08 00:12:55 as along with 1 group BioinfoCIPF
	The DIMA web resourceexploring the protein domain network [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 997-998. by Philipp Pagel, Matthias Oesterheld, Dmitrij Frishman posted to bioinformatics protein protein_interactions servers software by marcius to the group SGU-CIPF on 2006-04-08 00:11:05 as along with 3 people and 1 group chad_davis bootsy kintoki BioinfoCIPF
	PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 248-250. by Anais Baudot, David Martin, Alain Guenoche, Bernard Jacq, Christine Brun posted to bioinformatics genome protein_function protein_interactions by marcius on 2006-02-02 05:50:04 as along with 2 people and 2 groups eweaver maralena BioinfoCIPF SGU-CIPF
	A quantitative protein interaction network for the ErbB receptors using protein microarrays [My Copy] Nature (06 November 2005) by Richard B. Jones, Andrew Gordus, Jordan A. Krall, Gavin Macbeath posted to protein_interactions proteomics by marcius to the group BioinfoCIPF on 2006-01-11 20:29:35 as along with 6 people and 3 groups okarsligil jfr tny julius koller pjasper Bioinformatics SysbioMPI-TCells SGU-CIPF
	Bcl-x(L)-mediated changes in metabolic pathways of breast cancer cells: from survival in the blood stream to organ-specific metastasis. [My Copy] Am J Pathol, Vol. 167, No. 4. (October 2005), pp. 1125-1137. by L. España, B. Martín, R. Aragüés, et al.C. Chiva, B. Oliva, D. Andreu, A. Sierra posted to bioinformatics biology protein_interactions by marcius on 2005-11-03 16:07:33 as along with 1 person and 2 groups baldo BioinfoCIPF SGU-CIPF
	Scoring docking models with evolutionary information. [My Copy] Proteins, Vol. 60, No. 2. (1 August 2005), pp. 275-280. by M. Tress, D. de Juan, O. Graña, et al.M. J. Gómez, P. Gómez-Puertas, J. M. González, G. López, A. Valencia posted to bioinformatics cafasp casp protein_interactions by marcius to the group BioinfoCIPF on 2005-10-22 09:02:06 as along with 3 people and 1 group bicko ameetsoni cjeans SGU-CIPF
	Crossing the species barrier [My Copy] Nature Structural & Molecular Biology, Vol. 12, No. 10., pp. 831-831. by Hwa-Ping Feng posted to disease protein_interactions protein_structure by marcius on 2005-10-21 21:59:01 as along with 2 groups BioinfoCIPF SGU-CIPF
	Geometry-based flexible and symmetric protein docking. [My Copy] Proteins, Vol. 60, No. 2. (1 August 2005), pp. 224-231. by D. Schneidman-Duhovny, Y. Inbar, R. Nussinov, H. J. Wolfson posted to docking protein_interactions software by marcius to the group SGU-CIPF on 2005-10-21 19:48:00 as along with 2 people and 1 group vavi bicko BioinfoCIPF
	MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. [My Copy] Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364. by L. Lu, H. Lu, J. Skolnick posted to computational_biology protein_interactions protein_structure by marcius to the group BioinfoCIPF on 2005-10-21 19:36:56 as along with 6 people and 4 groups ana bicko chad_davis sangeetha ruvido kgutwin structural_bioinformatics Bioinformatics insilicodrug SGU-CIPF
	Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. [My Copy] J Mol Biol, Vol. 307, No. 3. (30 March 2001), pp. 929-938. by J. Park, M. Lappe, S. A. Teichmann posted to protein_interactions by tjimenez on 2005-06-13 12:35:12 as along with 5 people and 2 groups medic0747 chad_davis ronkeliz ana cjeans structural_bioinformatics Bioinformatics

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bioinformatics	42
nmr	15
algorithms	12
protein_domains	12
evolution	10
servers	9
software	9
review	7
comparative_docking	6
disease	6
protein	6
protein_structure	6
proteomics	4
biology	3
cafasp	3
casp	3
clustering	3
comparative_modeling	3
computational_biology	3
databases	3
docking	3
experimental	3
genome	3
interaction	3
ligand	3
network	3
protein_complexes	3
protein_function	3
rna	3
stem_cells	3
structure	3
systems_biology	3
views	3
30-oct-09	2
biophysics	2
e_coli	2
functional_modules	2
gene_expression	2
graphics	2
methods	2
protein_protein_interactions	2
visualization	2
bacteria	1
book	1
cancer	1
chemotaxis	1
coiled_coil	1
conformational_dynamics	1
desolvation	1
distribution	1
ecoli	1
electrostatic	1
folding	1
interactome	1
intrinsic_protein_disorder	1
kinetics	1
leucine_zipper	1
mrna-binding-proteins	1
networks	1
noncovalent	1
overexpression	1
pharmacology	1
protein-networks	1
protein_domain_sequences	1
protein_folding	1
protein_nw_quality	1
resonance_energy_transfer	1
scale-free	1
sensitivity	1
signaling	1
snare	1
specificity	1
systems-biology	1
timescale	1
yeast	1

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