Tag proteins [more than 800 articles] Export

Recent papers classified by the tag proteins.

	Direct Observation of Markovian Behavior of the Mechanical Unfolding of Individual Proteins☆ [My Copy] Biophysical Journal, Vol. 95, No. 2. (July 2008), pp. 782-788. by Y. Cao posted to unfolding proteins nug2 kinetics by edws on 2009-11-09 02:49:18 as along with 1 person devinli
	Collective alignment of polar filaments by molecular motors [My Copy] The European Physical Journal E: Soft Matter and Biological Physics, Vol. 28, No. 4. (1 April 2009), pp. 401-409. by F. Ziebert, M. Vershinin, S. Gross, I. Aranson posted to proteins motor microtubules journalclub filaments coupling alignment by rodney on 2009-11-09 01:39:37 as
	Next generation software for functional trend analysis [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3043-3044. by Gabriel F. Berriz, John E. Beaver, Can Cenik, Murat Tasan, Frederick P. Roth posted to proteins networks genomics genome genes biology bioinformatics algorithms by kmdaily on 2009-11-05 23:55:45 as along with 2 people VGreiff guhjy
	Designing supramolecular protein assemblies [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 4. (1 August 2002), pp. 464-470. by T. Yeates posted to self-assembly review proteins by kevinchannon on 2009-11-03 17:03:18 as
	AM1 Parameters for the Prediction of 1H and 13C NMR Chemical Shifts in Proteins† [My Copy] The Journal of Physical Chemistry A, Vol. 113, No. 43. (29 October 2009), pp. 11550-11559. by Duane E. Williams, Martin B. Peters, Bing Wang, Adrian E. Roitberg, Kenneth M. Merz posted to shifts semiempirical proteins prediction parameters nmr chemical am1 by zfekete on 2009-11-03 10:08:07 as along with 1 person francescamocci
	Oscillatory recruitment of signaling proteins to cell tips promotes coordinated behavior during cell fusion [My Copy] Proceedings of the National Academy of Sciences (2 November 2009) by AndrÃ© Fleissner, Abigail C. Leeder, M. Gabriela Roca, Nick D. Read, N. Louise Glass posted to signaling proteins microscopy cell-biology by samjlord to the group moernerlab on 2009-11-03 07:15:50 as
	An ensemble model of competitive multi-factor binding of the genome [My Copy] Genome Research, Vol. 19, No. 11. (31 November 2009), pp. 2101-2112. by Todd Wasson, Alexander J. Hartemink posted to tf proteins motif by djkt on 2009-11-02 18:15:45 as along with 6 people megraw vingron xianjun owhitney bpcusack natstreet
	Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin [My Copy] Nature Physics (01 April 2006), pp. 282-286. by Jasna Brujic, Hermans, Kirstin A. Walther, Julio M. Fernandez posted to unfolding ubiquitin proteins glassy by edws on 2009-11-02 06:17:08 as along with 1 person RodolfoHermans
	ROLES OF BILAYER MATERIAL PROPERTIES IN FUNCTION AND DISTRIBUTION OF MEMBRANE PROTEINS [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 35, No. 1. (2006), pp. 177-198. by Thomas J. McIntosh, Sidney A. Simon posted to proteins membrane erythrocyte by richardfranzese on 2009-11-01 23:08:34 as along with 2 people birte bertelsen
	Post-transcriptional regulation in cancer. [My Copy] Biology of the cell / under the auspices of the European Cell Biology Organization, Vol. 96, No. 7. (September 2004), pp. 479-498. by Yann Audic, Rebecca S. Hartley posted to rna proteins binding by hcoller on 2009-10-30 19:18:18 as
	Enzymes with extra talents: moonlighting functions and catalytic promiscuity. [My Copy] Curr Opin Chem Biol, Vol. 7, No. 2. (April 2003), pp. 265-272. by S. D. Copley posted to proteins pleiotropy moonlighting by tomhebbron on 2009-10-29 22:55:47 as along with 3 people and 1 group pauldobson i41m caporaso biomedical-nlp
	Protein−Solid Interactions: Important Role of Solvent, Ions, Temperature, and Buffer in Protein Binding to α-Zr(IV) Phosphate [My Copy] Langmuir, Vol. 25, No. 21. (3 November 2009), pp. 12635-12643. by Michael R. Duff, Challa V. Kumar posted to proteins by carlosjavierna on 2009-10-27 18:56:22 as
	HOW WELL CAN SIMULATION PREDICT PROTEIN FOLDING KINETICS AND THERMODYNAMICS? [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 34, No. 1. (29 October 2005), pp. 43-69. by Christopher D. Snow, Eric J. Sorin, Young M. Rhee, Vijay S. Pande posted to thermodynamics structure_prediction simulations proteins kinetics by amphibina on 2009-10-27 07:33:22 as along with 9 people flbarroso Diego_Prada doktornoe dgront blackbart allmensch saunders evanse toerst
	The Key Event in Force-Induced Unfolding of Titins Immunoglobulin Domains [My Copy] Vol. 79, No. 1. (1 July 2000), pp. 51-65. by Hui Lu, Klaus Schulten posted to unfolding titin proteins md by edws on 2009-10-26 07:58:57 as
	Periodic Forces Trigger a Complex Mechanical Response in Ubiquitin [My Copy] Journal of Molecular Biology, Vol. 390, No. 3. (17 July 2009), pp. 443-456. by Piotr Szymczak, Harald Janovjak posted to unfolding ubiquitin proteins coarse-graining by edws on 2009-10-26 06:27:22 as
	The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 19. (11 May 2004), pp. 7299-7304. by Michael Schlierf, Hongbin Li, Julio M. Fernandez posted to unfolding ubiquitin proteins afm by edws on 2009-10-26 06:26:40 as along with 2 people devinli choonpeng
	Automated inference of molecular mechanisms of disease from amino acid substitutions [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2744-2750. by Biao Li, Vidhya G. Krishnan, Matthew E. Mort, et al.Fuxiao Xin, Kishore K. Kamati, David N. Cooper, Sean D. Mooney, Predrag Radivojac posted to snps proteins disease by djkt on 2009-10-23 23:57:28 as
	Domain shuffling and the evolution of vertebrates [My Copy] Genome Research, Vol. 19, No. 8. (14 August 2009), pp. 1393-1403. by Takeshi Kawashima, Shuichi Kawashima, Chisaki Tanaka, et al.Miho Murai, Masahiko Yoneda, Nicholas H. Putnam, Daniel S. Rokhsar, Minoru Kanehisa, Nori Satoh, Hiroshi Wada posted to vertebrates proteins evolution domain_shuffling by venancio on 2009-10-23 18:39:41 as along with 7 people and 1 group PabloMarin bpcusack ppgardne djkt cmzmasek grahamc JustinCrocker Journal picks
	The human protein coevolution network. [My Copy] Genome research, Vol. 19, No. 10. (20 October 2009), pp. 1861-1871. by Elisabeth R. Tillier, Robert L. Charlebois posted to proteins networks human dataset co-evolution by venancio on 2009-10-23 18:34:19 as along with 7 people dfdong Garamonfok jperkins TRHvidsten djkt phoenixzxl tmmurali
	Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues [My Copy] Nature Structural & Molecular Biology, Vol. 3, No. 2. (01 February 1996), pp. 193-205. by Sepideh Khorasanizadeh, Iain D. Peters, Heinrich Roder posted to ubiquitin proteins kinetics folding by edws on 2009-10-23 04:23:19 as
	Kinetics of unfolding and refolding of proteins 1I. Mathematical analysis [My Copy] Journal of Molecular Biology*, Vol. 73, No. 2. (January 1973), pp. 145-163. by A. Ikai posted to proteins kinetics folding by edws on 2009-10-23 04:22:42 as
	Characterization of intrinsically disordered proteins with electrospray ionization mass spectrometry: Conformational heterogeneity of alpha-synuclein [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Agya K. Frimpong, Rinat R. Abzalimov, Vladimir N. Uversky, Igor A. Kaltashov posted to proteins by carlosjavierna on 2009-10-22 14:23:55 as
	Direct observation of ultrafast folding and denatured state dynamics in single protein molecules [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18569-18574. by Hannes Neuweiler, Christopher M. Johnson, Alan R. Fersht posted to sms proteins by samjlord to the group moernerlab on 2009-10-21 06:12:35 as along with 2 people zwang quanwang
	Coordination Dynamics of Zinc in Proteins [My Copy] Chemical Reviews, Vol. 109, No. 10. (14 October 2009), pp. 4682-4707. by Wolfgang Maret, Yuan Li posted to zinc proteins dynamics coordination by zfekete on 2009-10-19 08:16:11 as along with 2 people carlosjavierna rkdeshpa
	Structural relationships among proteins with different global topologies and their implications for function annotation strategies [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17377-17382. by Donald Petrey, Markus Fischer, Barry Honig posted to proteins honig-barry-h by carlosjavierna on 2009-10-18 18:10:28 as along with 5 people and 1 group apaydin philcarter TRHvidsten zwang phoenixzxl Orengo Group Journal Picks
	Natural selection on protein-coding genes in the human genome [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1153-1157. by Carlos D. Bustamante, Adi Fledel-Alon, Scott Williamson, et al.Rasmus Nielsen, Melissa Todd Hubisz, Stephen Glanowski, David M. Tanenbaum, Thomas J. White, John J. Sninsky, Ryan D. Hernandez, Daniel Civello, Mark D. Adams, Michele Cargill, Andrew G. Clark posted to system selection proteins immune evolution adaptive by VGreiff on 2009-10-17 10:25:54 as along with 24 people and 5 groups tomhebbron ilyashl athma provero jimithystok gjuggler renewang jo_davies stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
	P64, a Novel Major Virion DNA-Binding Protein Potentially Involved in Condensing the Spodoptera frugiperda Ascovirus 1a Genome [My Copy] J. Virol., Vol. 83, No. 6. (15 March 2009), pp. 2708-2714. by Yeping Tan, Tatsinda Spears, Dennis K. Bideshi, et al.Jeffrey J. Johnson, Robert Hice, Yves Bigot, Brian A. Federici posted to viral sequences rich proteins protein genome dna condensation binding arginine by armaquim7 on 2009-10-16 09:29:11 as
	Membrane promotes tBID interaction with BCLXL [My Copy] Nature Structural & Molecular Biology, Vol. advance online publication (11 October 2009) by Ana J. Garcia-Saez, Jonas Ries, Mar Orzaez, Enrique Perez-Paya, Petra Schwille posted to proteins pro molecular mechanism garcia09apdf fcs bid bclxl apoptotic anti by paulschlesinger on 2009-10-16 00:05:47 as
	Friction in Motor Proteins [My Copy] Science, Vol. 325, No. 5942. (14 August 2009), pp. 826-827. by Claudia Veigel, Christoph F. Schmidt posted to proteins perspectives motor friction by rodney on 2009-10-14 05:43:56 as along with 1 person alexknight
	Temporal Constraints on the Incorporation of Regulatory Mutants in Evolutionary Pathways [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2455-2462. by Kyle M. Brown, Mark A. DePristo, Daniel M. Weinreich, Daniel L. Hartl posted to selection proteins evolution enzymes bacteria by djkt to the group iSEEM on 2009-10-12 17:58:59 as along with 1 person JustinCrocker
	Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics [My Copy] The Journal of Chemical Physics, Vol. 126, No. 15. (21 April 2007), 155101. by John D. Chodera, Nina Singhal, Vijay S. Pande, Ken A. Dill, William C. Swope posted to simulation proteins clustering by ruvido on 2009-10-12 14:33:44 as along with 2 people allmensch Diego_Prada
	Automatic genome-wide reconstruction of phylogenetic gene trees [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i549-558. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to proteins phylogenetics duplication by djkt on 2009-10-09 16:29:19 as along with 7 people and 1 group biomcgary thegoose2 gjuggler stajich shigepong seitentaisei tharris Mycology
	Conformations of proteins in equilibrium. [My Copy] Physical review letters, Vol. 87, No. 8. (20 August 2001) by C. Micheletti, J. R. Banavar, A. Maritan posted to proteins mean-field coarse-graining by edws on 2009-10-05 14:18:07 as
	A New Method for Fast and Accurate Derivation of Molecular Conformations [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 42 (2002), pp. 64-70. by Ming Zhang, Lydia E. Kavraki, I. Lydia, E. Kavraki posted to proteins protein_structure protein_representation conformational_search by rasfonseca on 2009-10-05 12:16:12 as
	One-Sample Approach to Determine the Relative Orientations of Proteins in Ternary and Binary Complexes from Residual Dipolar Coupling Measurements [My Copy] Journal of the American Chemical Society, Vol. 131, No. 40. (14 October 2009), pp. 14138-14139. by Marco Tonelli, Larry R. Masterson, Gabriel Cornilescu, John L. Markley, Gianluigi Veglia posted to rdc proteins nmr 13c by paridep on 2009-10-02 00:56:21 as along with 1 person rph
	Accelerating molecular dynamic simulation on graphics processing units [My Copy] Journal of Computational Chemistry, Vol. 30, No. 6. (2009), pp. 864-872. by Mark S. Friedrichs, Peter Eastman, Vishal Vaidyanathan, et al.Mike Houston, Scott Legrand, Adam L. Beberg, Daniel L. Ensign, Christopher M. Bruns, Vijay S. Pande posted to proteins molecular-dynamics modelling by kevinchannon on 2009-10-01 16:14:18 as along with 10 people and 3 groups anuragsethi flbarroso r2s2 iantunbridge ihaque sobolevnrm ruvido massivemayhem barry RamuAnandakrishnan baker-group structural_bioinformatics McCammon
	Understanding hydrogen-bond patterns in proteins using network motifs [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2921-2928. by Ofer Rahat, Uri Alon, Yaakov Levy, Gideon Schreiber posted to proteomics proteins networks by VGreiff on 2009-10-01 12:00:28 as along with 4 people tomhebbron zwang scmelton phoenixzxl
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to review proteins protein-structure protein-stability by kevinchannon on 2009-09-30 23:19:14 as along with 18 people and 3 groups anuragsethi ahmetbakan klexa lauresultan dbikard ibuch ramiro2k barry pablocarb ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger structural_bioinformatics McCammon baker-group
	Do Quantum Mechanical Energies Calculated for Small Models of Protein-Active Sites Converge?† [My Copy] The Journal of Physical Chemistry A, Vol. 113, No. 43. (29 October 2009), pp. 11793-11800. by LiHong Hu, Jenny Eliasson, Jimmy Heimdal, Ulf Ryde posted to proteins model_compounds enzymes by Gershom on 2009-09-30 08:51:46 as along with 1 person francescamocci
	The Universal Protein Resource (UniProt) 2009. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D169-174. by UniProt Consortium posted to proteins database computational_analysis bioinformatics by badi on 2009-09-29 19:15:45 as along with 10 people azazello MarcoAlvarez tfuji nedwards niallhaslam bicko gjuggler lptolik coela sjcockell
	Normal Mode Analysis of Biomolecular Structures: Functional Mechanisms of Membrane Proteins [My Copy] Chemical Reviews, Vol. 0, No. 0. (0000) by Ivet Bahar, Timothy R. Lezon, Ahmet Bakan, Indira H. Shrivastava posted to proteins normal mode membranes bahar09pdf analysis by paulschlesinger on 2009-09-29 00:51:29 as
	Prediction of protein coarse contact maps. [My Copy] Journal of bioinformatics and computational biology, Vol. 1, No. 2. (July 2003), pp. 411-431. by Alessandro Vullo, Paolo Frasconi posted to proteins protein_structure predictions by rasfonseca on 2009-09-28 14:58:11 as
	Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database [My Copy] Genome Biology, Vol. 8, No. 3. (03 March 2007), R31. by Chi H. Tung, Jhang W. Huang, Jinn M. Yang posted to proteins protein_structure protein_representation by rasfonseca on 2009-09-28 08:57:49 as
	Natural coordinate representation for the protein backbone structure. [My Copy] Proteins, Vol. 49, No. 2. (1 November 2002), pp. 206-215. by Cornelius G. Hunter, Shankar Subramaniam posted to search_space proteins protein_representation degrees_of_freedom by rasfonseca on 2009-09-27 19:31:03 as
	The complexity and accuracy of discrete state models of protein structure. [My Copy] Journal of molecular biology, Vol. 249, No. 2. (2 June 1995), pp. 493-507. by B. H. Park, M. Levitt posted to search_space proteins protein_representation by rasfonseca on 2009-09-27 19:28:41 as
	Algorithm and Data Structures for Efficient Energy Maintenance during Monte Carlo Simulation of Proteins [My Copy] Journal of Computational Biology, Vol. 11 (2003) by Itay Lotan, Fabian Schwarzer, Dan Halperin, Jean-claude Latombe posted to proteins kinematics kinematic_chains energy_functions degrees_of_freedom chain-tree algorithmic_geometry by rasfonseca on 2009-09-27 19:15:20 as
	Fast Proximity Queries with Swept Sphere Volumes [My Copy] (1999) by Eric Larsen, Stefan Gottschalk, Ming C. Lin, Dinesh Manocha posted to proteins line_swept_sphere capsule algorithmic_geometry by rasfonseca on 2009-09-27 12:49:41 as along with 1 person malkav30
	Visualization and Analysis of Protein Structures Using Euclidean Voronoi Diagram of Atoms [My Copy] Computational Science and Its Applications – ICCSA 2005 (2005), pp. 993-1002. by Deok-Soo Kim, Donguk Kim, Youngsong Cho, et al.Joonghyun Ryu, Cheol-Hyung Cho, Joon Y. Park, Hyun C. Lee posted to voronoi_diagram proteins algorithmic_geometry by rasfonseca on 2009-09-27 12:00:28 as
	Pocket Recognition on a Protein Using Euclidean Voronoi Diagram of Atoms [My Copy] Computational Science and Its Applications – ICCSA 2005 (2005), pp. 707-715. by Deok-Soo Kim, Cheol-Hyung Cho, Youngsong Cho, Chung I. Won, Donguk Kim posted to proteins algorithmic_geometry by rasfonseca on 2009-09-27 11:55:36 as
	Global Analysis of Cdk1 Substrate Phosphorylation Sites Provides Insights into Evolution [My Copy] Science, Vol. 325, No. 5948. (25 September 2009), pp. 1682-1686. by Liam J. Holt, Brian B. Tuch, Judit Villen, Alexander D. Johnson, Steven P. Gygi, David O. Morgan posted to yeast signalling proteins evolution by djkt on 2009-09-25 17:23:57 as along with 5 people nzm brianb walshtp jjray neils

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evolution	111
review	42
molecular	40
protein	39
networks	38
membrane	32
selection	26
motor	25
nmr	23
folding	22
bioinformatics	20
biophysics	20
dynamics	20
sms	20
water	20
alignment	19
dna	19
structure	18
yeast	18
duplication	17
microtubules	17
phylogenetics	17
primates	17
binding	16
bioconjugation	15
fret	15
scale-free-networks	15
bio-ontologies	14
book	14
coarse-graining	14
genes	14
motors	14
sequence	14
biological_networks	13
genetics	13
genome	13
interactions	13
protein_interaction	13
proteomics	13
sgc	13
structural_biology	13
biomechanics	12
database	12
human	12
protein-design	12
protein-folding	12
rna	12
databases	11
disordered	11
expression	11
humans	11
kinesin	11
md	11
simulation	11
analysis	10
animals	10
bacteria	10
free-energy	10
methods	10
popgen	10
protein_dynamics	10
biology	9
crystal_structure	9
data-mining	9
enzymes	9
free_energy	9
hydrophobicity	9
interface	9
lipid	9
md_simulation	9
membranes	9
phylogeny	9
unfolding	9
amino	8
fluorescent	8
mice	8
microscopy	8
other_reovirus	8
protein_folding	8
secondary-structures	8
self-assembly	8
software	8
stability	8
acceleration	7
acid	7
amino-acid	7
clustering	7
disease	7
divergence	7
elastic	7
fcs	7
fluorophores	7
metagenomics	7
microbes	7
models	7
pathway	7
phylogenomics	7
protein-structure	7
snps	7
spectrometry	7

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