Tag proteomics [more than 800 articles] Export

Recent papers classified by the tag proteomics.

	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to proteomics molecular genomics blast by VGreiff on 2009-11-21 19:01:26 as along with 77 people and 6 groups richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Combined use of sequence similarity and codon bias for coding region identification. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 1, No. 1. (1994), pp. 39-50. by D. J. States, W. Gish posted to proteomics molecular genomics blast by VGreiff on 2009-11-21 19:00:47 as along with 2 people azazello wenhan
	Integrated Proteomic Analysis of Human Cancer Cells and Plasma from Tumor Bearing Mice for Ovarian Cancer Biomarker Discovery [My Copy] PLoS ONE, Vol. 4, No. 11. (19 November 2009), e7916. by Sharon J. Pitteri, Lellean JeBailey, Vitor M. Faça, et al.Jason D. Thorpe, Melissa A. Silva, Reneé C. Ireton, Marc B. Horton, Hong Wang, Liese C. Pruitt, Qing Zhang, Kuang H. Cheng, Nicole Urban, Samir M. Hanash, Daniela M. Dinulescu posted to proteomics ovarian_cancer mouse cell_line biomarker by frohike on 2009-11-21 12:50:07 as
	Mind the technology gap [My Copy] Nature Methods, Vol. 4, No. 10. (01 October 2007), pp. 765-765. posted to proteomics by seb1 on 2009-11-20 20:24:18 as
	Introduction to Computational Proteomics [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (27 July 2007), e114. by Jacques Colinge, Keiryn L. Bennett posted to proteomics bioinformatics by Jporci on 2009-11-20 19:55:32 as along with 12 people and 1 group phoenixzxl alexgeorgiou Borelli daforerog druvus giovenko guhjy chad_davis anwazo zwang cabbagezs groepl Bioinformatics
	Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography-Tandem Mass Spectrometry. [My Copy] Journal of proteome research (18 November 2009) by David Lee L. Tabb, Lorenzo Vega-Montoto, Paul Rudnick, et al.Asokan Variyath, Amy-Joan J. Ham, David M. Bunk, Lisa Kilpatrick, Dean Billheimer, Ron Blackman, Helene L. Cardasis, Steven A. Carr, Karl R. Clauser, Jacob D. Jaffe, Kevin Kowalski, Thomas A. Neubert, Fred Regnier, Birgit Schilling, Tony Tegeler, Mu Wang, Pei Wang, Jeffrey R. Whiteaker, Lisa Zimmerman, Susan J. Fisher, Bradford Wayne W. Gibson, Christopher R. Kinsinger, Mehdi Mesri, Henry Rodriguez, Stephen E. Stein, Paul Tempst, Amanda Paulovich, Daniel C. Liebler, Cliff Spiegelman posted to standard proteomics by brianb on 2009-11-20 16:08:55 as
	A HUPO test sample study reveals common problems in mass spectrometry-based proteomics. [My Copy] Nature methods, Vol. 6, No. 6. (17 June 2009), pp. 423-430. by Alexander W. Bell, Eric W. Deutsch, Catherine E. Au, et al.Robert E. Kearney, Ron Beavis, Salvatore Sechi, Tommy Nilsson, John J. Bergeron, HUPO Test Sample Working Group posted to proteomics inter-laboratory comparison by jfr on 2009-11-20 14:03:37 as along with 4 people guhjy fenghezi leliavski brianb
	PeptideDepot: Flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2009), NA. by Kebing Yu, Arthur R. Salomon posted to repository proteomics by brianb on 2009-11-19 20:51:35 as
	Getting started in computational mass spectrometry-based proteomics. [My Copy] PLoS computational biology, Vol. 5, No. 5. (29 May 2009), e1000366. by Olga Vitek posted to review proteomics plos_start by jfr on 2009-11-19 10:30:36 as along with 8 people eliasman ptrobajo nuin kiekyon sjcockell renatomilani danmaclean fgibson
	Systems-level dynamic analyses of fate change in murine embryonic stem cells [My Copy] Nature, Vol. 462, No. 7271. (19 November 2009), pp. 358-362. by Rong Lu, Florian Markowetz, Richard D. Unwin, et al.Jeffrey T. Leek, Edoardo M. Airoldi, Ben D. MacArthur, Alexander Lachmann, Roye Rozov, Avi Ma/'ayan, Laurie A. Boyer, Olga G. Troyanskaya, Anthony D. Whetton, Ihor R. Lemischka posted to stem_cell proteomics multi_scale_modeling multi_omics mouse microarray_data_analysis itraq histone chip-chip by frohike on 2009-11-19 09:25:13 as along with 2 people and 1 group pedrobeltrao balabu Journal picks
	Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics. [My Copy] Journal of proteome research (16 November 2009) by Henry Lam, Eric Deutsch, Ruedi Aebersold posted to proteomics fdr by brianb on 2009-11-18 19:55:16 as
	Advances in protein turnover analysis at the global level and biological insights. [My Copy] Mass spectrometry reviews (15 September 2009) by Qingbo Li posted to proteomics protein-stability by guhjy on 2009-11-18 14:26:14 as
	Mascot File Parsing and Quantification (MFPaQ), a New Software to Parse, Validate, and Quantify Proteomics Data Generated by ICAT and SILAC Mass Spectrometric Analyses: Application To the Proteomics Study of Membrane Proteins from Primary Human Endothelial Cells [My Copy] Mol Cell Proteomics, Vol. 6, No. 9. (1 September 2007), pp. 1621-1637. by David Bouyssie, Anne G. de Peredo, Emmanuelle Mouton, et al.Renaud Albigot, Lucie Roussel, Nathalie Ortega, Corinne Cayrol, Odile Burlet-Schiltz, Jean-Philippe Girard, Bernard Monsarrat posted to quantitative_proteomics proteomics by dandaman on 2009-11-18 10:35:51 as along with 2 people Sonix guhjy
	Significance analysis of microarray for relative quantitation of LC/MS data in proteomics [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (10 April 2008), 187. by Bryan Roxas, Qingbo Li posted to statistics statistical_tests quantitative_proteomics proteomics by dandaman on 2009-11-18 10:34:47 as along with 1 person guhjy
	Empirical Bayes Analysis of Quantitative Proteomics Experiments [My Copy] PLoS ONE, Vol. 4, No. 10. (14 October 2009), e7454. by Adam A. Margolin, Shao-En Ong, Monica Schenone, et al.Robert Gould, Stuart L. Schreiber, Steven A. Carr, Todd R. Golub posted to statistics statistical_tests quantitative_proteomics proteomics by dandaman on 2009-11-18 10:34:15 as along with 3 people and 1 group brianb rdiaz ppgardne Journal picks
	Widespread changes in protein synthesis induced by microRNAs [My Copy] Nature, Vol. 455, No. 7209. (30 July 2008), pp. 58-63. by Matthias Selbach, Bjorn Schwanhausser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky posted to quantitative_proteomics proteomics mirna by dandaman on 2009-11-18 10:20:31 as along with 26 people and 2 groups framancuso inesdesantiago lwaldron danaiancu fishtank dswan TRHvidsten pengchy valeriehilgers druvus guhjy martin-novak cajunsushi heliopais vertikalist jfr caizhiqiang psique megraw neils j_rodriguez erel10 maralena reyez mtagaya gdb microRNA BTS-PT-AS-CS
	Emerging Miniaturized Proteomic Technologies to Study Cell Signaling in Clinical Samples [My Copy] Sci. Signal., Vol. 2, No. 93. (20 October 2009), pe65. by Taranjit S. Gujral, Gavin MacBeath posted to proteomics micro by kabookie on 2009-11-18 08:24:10 as along with 2 people nzm brianb
	MS/MS/MS Reveals False Positive Identification of Histone Serine Methylation [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Junmei Zhang, Yue Chen, Zhihong Zhang, Gang Xing, Joanna Wysocka, Yingming Zhao posted to ptm proteomics fragmentation fdr bias by brianb on 2009-11-17 21:40:21 as
	Shared Peptides in Mass Spectrometry Based Protein Quantification [My Copy] In RECOMB 2'09: Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology (2009), pp. 356-371. by Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna posted to quantitation proteomics by brianb on 2009-11-17 21:21:05 as along with 1 person nedwards
	Quantitative proteomic profiling identifies new renal targets of copper(II)-selective chelation in the reversal of diabetic nephropathy in rats. [My Copy] Proteomics, Vol. 9, No. 18. (September 2009), pp. 4309-4320. by Deming Gong, Xiuyin Chen, Martin Middleditch, et al.Liangdong Huang, Greeshma Vazhoor Amarsingh, Shiva Reddy, Jun Lu, Shaoping Zhang, Katya Ruggiero, Anthony R. Phillips, Garth J. Cooper posted to rat proteomics dn copper by guhjy on 2009-11-17 11:39:51 as
	Variable slope normalization of reverse phase protein arrays [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1384-1389. by E. Shannon Neeley, Steven M. Kornblau, Kevin R. Coombes, Keith A. Baggerly posted to proteomics normalization by jfr on 2009-11-15 15:01:37 as
	Introduction to proteomics. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 564 (2009), pp. 3-10. by Friedrich Lottspeich posted to proteomics by guhjy on 2009-11-15 02:53:39 as
	Membrane transport proteins of the malaria parasite [My Copy] Molecular Microbiology, Vol. 74, No. 3. (1 October 2009), pp. 519-528. by Rowena E. Martin, Hagai Ginsburg, Kiaran Kirk posted to vsa proteomics malaria by GeeSharpMinor on 2009-11-14 21:52:59 as
	Post-translational modifications in Plasmodium: more than you think! [My Copy] Molecular and biochemical parasitology, Vol. 168, No. 2. (8 December 2009), pp. 123-134. by Duk-Won Doug W. Chung, Nadia Ponts, Serena Cervantes, Karine G. Le Roch posted to proteomics malaria by GeeSharpMinor on 2009-11-14 21:51:03 as
	multiplierz: an extensible API based desktop environment for proteomics data analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 October 2009), 364. by Jignesh Parikh, Manor Askenazi, Scott Ficarro, et al.Tanya Cashorali, James Webber, Nathaniel Blank, Yi Zhang, Jarrod Marto posted to tools proteomics peptide_sequence mass_spectrometry by davidmam on 2009-11-13 10:18:48 as along with 2 people renatomilani neilswainston
	A whole-genome bioinformatics approach to selection of antigens for systematic antibody generation. [My Copy] Proteomics, Vol. 8, No. 14. (July 2008), pp. 2832-2839. by Lisa Berglund, Erik Björling, Kalle Jonasson, et al.Johan Rockberg, Linn Fagerberg, Cristina Al-Khalili Szigyarto, Asa Sivertsson, Mathias Uhlén posted to proteomics databases bioinformatics by pekrau on 2009-11-13 09:32:13 as along with 1 person niallhaslam
	A genecentric Human Protein Atlas for expression profiles based on antibodies. [My Copy] Molecular & cellular proteomics : MCP, Vol. 7, No. 10. (1 October 2008), pp. 2019-2027. by Lisa Berglund, Erik Björling, Per Oksvold, et al.Linn Fagerberg, Anna Asplund, Cristina Al-Khalili A. Szigyarto, Anja Persson, Jenny Ottosson, Henrik Wernérus, Peter Nilsson, Emma Lundberg, Asa Sivertsson, Sanjay Navani, Kenneth Wester, Caroline Kampf, Sophia Hober, Fredrik Pontén, Mathias Uhlén posted to proteomics databases bioinformatics by pekrau on 2009-11-13 09:31:40 as along with 2 people daed guhjy
	Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network [My Copy] Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to yeast transcriptomics proteomics networks metabolism gene-networks by pmendes on 2009-11-12 20:37:57 as along with 14 people and 3 groups myzhang rsaito isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek raiyar thomaskelder shikin Bioinformatics steinmetzlab GeneGo
	MCP ups the ante by mandating raw-data deposition [My Copy] Journal of Proteome Research, Vol. 8, No. 11. (6 November 2009), pp. 4887-4888. by Katie Cottingham posted to repository proteomics by brianb on 2009-11-12 18:17:13 as
	Comparative analysis of OFFGel, strong cation exchange with pH gradient, and RP at high pH for first-dimensional separation of peptides from a membrane-enriched protein fraction [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2009), NA. by Bruno Manadas, Jane A. English, Kieran J. Wynne, David R. Cotter, Michael J. Dunn posted to proteomics electrophoresis chromatography by brianb on 2009-11-12 18:14:15 as
	Quantification of Membrane Proteins Using Nonspecific Protease Digestions. [My Copy] Journal of proteome research, Vol. 0, No. 0. (9 November 2009) by Maria Bendz, Mirja Carlsson C. Möller, Giorgio Arrigoni, et al.Asa Wåhlander, Roberto Stella, Salvatore Cappadona, Fredrik Levander, Lars Hederstedt, Peter James posted to proteomics membrane by guhjy on 2009-11-12 09:29:59 as along with 1 person neils
	iQuantitator: A tool for protein expression inference using iTRAQ [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 342. by John Schwacke, Elizabeth Hill, Edward Krug, Susana C. Walters, Kevin Schey posted to tools proteomics itraq by davidmam on 2009-11-11 14:44:55 as
	UniMaP: finding unique mass and peptide signatures in the human proteome [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3035-3037. by Anastasia Alexandridou, George T. Tsangaris, Konstantinos Vougas, Konstantina Nikita, George Spyrou posted to spec proteomics mass by davidmam on 2009-11-10 18:01:51 as along with 1 person brianb
	Improving peptide identification with single-stage mass spectrum peaks [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2969-2974. by Zengyou He, Weichuan Yu posted to spec proteomics mass by davidmam on 2009-11-10 18:00:05 as along with 2 people neilswainston nuin
	Proteomics: quantitative and physical mapping of cellular proteins [My Copy] Trends in Biotechnology, Vol. 17, No. 3. (1 March 1999), pp. 121-127. by W. Blackstock posted to proteomics electrophoresis by flbarroso on 2009-11-10 16:48:39 as
	Systematic comparison of the human saliva and plasma proteomes [My Copy] PROTEOMICS - CLINICAL APPLICATIONS, Vol. 3, No. 1. (1 January 2009), pp. 116-134. by Weihong Yan, Rolf Apweiler, Brian M. Balgley, et al.Pinmanee Boontheung, Jonathan L. Bundy, Benjamin J. Cargile, Steve Cole, Xueping Fang, Mireya Gonzalez-Begne, Timothy J. Griffin, Fred Hagen, Shen Hu, Lawrence E. Wolinsky, Cheng S. Lee, Daniel Malamud, James E. Melvin, Rajasree Menon, Michael Mueller, Renli Qiao, Nelson L. Rhodus, Joel R. Sevinsky, David States, James L. Stephenson, Shawn Than, John R. Yates, Weixia Yu, Hongwei Xie, Yongming Xie, Gilbert S. Omenn, Joseph A. Loo, David T. Wong posted to proteomics plasma fluid by brianb on 2009-11-10 15:45:17 as along with 1 person nedwards
	Two-Dimensional Difference Gel Electrophoresis (DiGE) Analysis of Plasmas from Dengue Fever Patients [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Lidiane M. Albuquerque, Monique R. O. Trugilho, Alex Chapeaurouge, et al.Patrícia B. Jurgilas, Patrícia T. Bozza, Fernando A. Bozza, Jonas Perales, Ana G. C. Neves-Ferreira posted to virus proteomics plasma human disease dengue 2d-dige by neils on 2009-11-09 22:20:54 as
	Genetic basis of proteome variation in yeast [My Copy] Nature Genetics, Vol. 39, No. 11. (21 October 2007), pp. 1369-1375. by Eric J. Foss, Dragan Radulovic, Scott A. Shaffer, et al.Douglas M. Ruderfer, Antonio Bedalov, David R. Goodlett, Leonid Kruglyak posted to proteomics_genetics proteomics by fishtank on 2009-11-09 19:52:15 as along with 7 people engelhardt balicea aswin lp2 roys caseybrown emptyhb
	PAnnBuilder: An R Package for Assembling Proteomic Annotation Data. [My Copy] Bioinformatics (Oxford, England) (23 February 2009) by Hong Li, Guohui Ding, Lu Xie, Yixue Li posted to software r proteomics annotation by jfr on 2009-11-09 13:32:43 as along with 7 people lwaldron guhjy nuin renatomilani brianb neils sjcockell
	Targeted proteomics for validation of biomarkers in clinical samples [My Copy] Brief Funct Genomic Proteomic, Vol. 8, No. 2. (1 March 2009), pp. 126-135. by Xiaoying Ye, Josip Blonder, Timothy D. Veenstra posted to review proteomics ffpe biomarkers by jfr on 2009-11-09 10:33:29 as along with 1 person guhjy
	Absolute quantification of phosphorylation on the kinase activation loop of cellular focal adhesion kinase by stable isotope dilution liquid chromatography/mass spectrometry. [My Copy] Analytical chemistry, Vol. 81, No. 9. (1 May 2009), pp. 3304-3313. by Eugene Ciccimaro, Steven K. Hanks, Kenneth H. Yu, Ian A. Blair posted to proteomics phosphorylation ms kinase icat fak by guhjy on 2009-11-09 04:52:41 as
	Receptor tyrosine kinase signaling: a view from quantitative proteomics. [My Copy] Molecular bioSystems, Vol. 5, No. 10. (October 2009), pp. 1112-1121. by Joern Dengjel, Irina Kratchmarova, Blagoy Blagoev posted to rtk proteomics egfr by guhjy on 2009-11-09 04:49:11 as
	Antibody-based proteomics. [My Copy] The FEBS journal (26 October 2009) by Hans Voshol, Markus Ehrat, Jens Traenkle, Eric Bertrand, Jan van Oostrum posted to proteomics ab by guhjy on 2009-11-09 04:44:52 as
	Technologies for plasma membrane proteomics. [My Copy] Proteomics (15 October 2009) by Stuart J. Cordwell, Tine E. Thingholm posted to proteomics membrane by guhjy on 2009-11-09 04:42:45 as
	Large-Scale Characterization of Phosphoproteins in Gastric Cancer Cells. [My Copy] Journal of proteome research (27 August 2009) by Guang-Rong R. Yan, Chuan-Le L. Xiao, Xing-Feng F. Yin, Hui-Hua H. Zhou, Zi-Lu L. Tan, Qing-Yu Y. He posted to proteomics phosphorylation by guhjy on 2009-11-09 04:42:12 as
	Proteomics of the lysosome. [My Copy] Biochimica et biophysica acta, Vol. 1793, No. 4. (April 2009), pp. 625-635. by Torben Lübke, Peter Lobel, David E. Sleat posted to proteomics lysosome by guhjy on 2009-11-09 04:40:16 as
	Disease proteomics. [My Copy] Genomic medicine, Vol. 2, No. 3-4. (December 2008), pp. 285-294. posted to proteomics disease by guhjy on 2009-11-09 02:41:33 as
	An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers [My Copy] Mol Cell Proteomics (20 October 2009), M900254-MCP200. by Jeffrey R. Whiteaker, Lei Zhao, Leigh Anderson, Amanda G. Paulovich posted to proteomics plasma mrm antibody by brianb on 2009-11-08 19:55:38 as
	Proteomics strategy for quantitative protein interaction profiling in cell extracts. [My Copy] Nature methods, Vol. 6, No. 10. (13 October 2009), pp. 741-744. by Kirti Sharma, Christoph Weber, Michaela Bairlein, et al.Zoltán Greff, György Kéri, Jürgen Cox, Jesper V. Olsen, Henrik Daub posted to proteomics methods interaction by renatomilani on 2009-11-07 00:37:06 as along with 1 person brianb
	Top-Down Identification of Protein Biomarkers in Bacteria with Unsequenced Genomes [My Copy] Analytical Chemistry, Vol. 0, No. 0. (0000) by Colin Wynne, Catherine Fenselau, Plamen A. Demirev, Nathan Edwards posted to topdown proteomics diganostic by brianb on 2009-11-06 16:22:02 as along with 2 people gjuggler nedwards

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bioinformatics	211
tandem-mass-spectrometry	176
quantitation	159
peptide-identification	137
review	134
cancer	116
electrophoresis	116
phosphorylation	116
mass-spectrometry	99
interaction	96
software	91
genomics	86
disease	77
protein	75
chromatography	72
urine	72
ms	71
biomarker	66
diganostic	66
network	62
statistics	60
ocbn	51
protein-quantitation	50
data	49
analysis	47
maldi	47
method	45
fdr	41
methods	41
peptide-identification-statistics	38
yeast	38
label-free	37
formaldehyde	36
ptm	36
microarray	35
expression	34
antibody	33
tissue	33
fragmentation	32
mass	32
standards	32
signaling	31
isoform	30
denovo-interpretation	28
forphd	28
mass-spec	28
phosphoproteomics	28
quantification	28
plasma	27
annotation	26
blood	26
modeling	26
spectrometry	26
database	25
db	25
microorganism-identification	25
seldi	25
n-terminal-peptides	24
structure	24
metabolomics	23
proteome	23
sample_prep	23
arrays	22
data_analysis	22
pathology	22
silac	22
gene_expression	21
integration	21
quantitative	21
transcriptomics	21
fluid	20
identification	20
genome-annotation	19
meta-analysis	19
topdown	19
dn	18
ma	18
methodspaper	18
processing	18
repository	18
gene	17
mapping	17
mouse	17
top-down	17
databank	16
evolution	16
peptide	16
imaging	15
massspec	15
networks	15
systems-biology	15
algorithm	14
gel-electrophoresis	14
itraq	14
lcm	14
malaria	14
mass_spectrometry	14
proteomics-software	14
systems	14
two-dimensional	14

Tag proteomics [more than 800 articles] Export

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