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Tag protonation [13 articles]

Recent papers classified by the tag protonation.
  • Structures and spectral signatures of protonated water networks in bacteriorhodopsin.
    Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 6980-6985.
    by G Mathias, D Marx
    posted to activation gpcr protonation retinal_binding_proteins rhodopsin theory water by xdeupi on 2007-06-11 10:25:44 as *** along with 1 person and 1 group saravan LabCompMed
  • A conserved carboxylic acid group mediates light-dependent proton uptake and signaling by rhodopsin.
    J Biol Chem, Vol. 269, No. 39. (30 September 1994), pp. 23879-23881.
    by S Arnis, K Fahmy, KP Hofmann, TP Sakmar
    posted to activation dry gpcr ionic lock mutation protonation rhodopsin tm3 by xdeupi on 2006-05-31 15:55:30 as ** along with 1 group LabCompMed
  • Proton movement and photointermediate kinetics in rhodopsin mutants.
    Biochemistry, Vol. 45, No. 17. (2 May 2006), pp. 5430-5439.
    by JW Lewis, I Szundi, MA Kazmi, TP Sakmar, DS Kliger
    posted to activation protonation rhodopsin by xdeupi on 2007-07-30 17:00:28 as ** along with 1 group LabCompMed
  • Characterizing a Partially Folded Intermediate of the Villin Headpiece Domain Under Non-denaturing Conditions: Contribution of His41 to the pH-dependent Stability of the N-terminal Subdomain
    Journal of Molecular Biology, Vol. 355, No. 5. (3 February 2006), pp. 1078-1094.
    by Michael J Grey, Yuefeng Tang, Emil Alexov, James C Mcknight, Daniel P Raleigh, Palmer
    posted to protonation villin_headpiece by sotaro on 2006-03-03 03:39:48 as **
  • Experiments Suggest that Simulations May Overestimate Electrostatic Contributions to the Mechanical Stability of a Fibronectin Type III Domain.
    J Mol Biol (9 June 2007)
    by Sean P P Ng, Jane Clarke
    posted to stability protonation by cat_worth to the group structural_bioinformatics on 2007-07-02 11:38:51 as ** along with 1 person choonpeng
  • Environmental effects on the protonation states of active site residues in bacteriorhodopsin.
    Biophys J, Vol. 66, No. 5. (May 1994), pp. 1341-1352.
    by RV Sampogna, B Honig
    posted to protonation active_site by cat_worth to the group structural_bioinformatics on 2007-02-07 12:20:35 as **
  • Accurate prediction of protonation state as a prerequisite for reliable MM-PB(GB)SA binding free energy calculations of HIV-1 protease inhibitors
    Journal of Computational Chemistry, Vol. 29, No. 5. (2008), pp. 673-685.
    by Kitiyaporn Wittayanarakul, Supot Hannongbua, Michael Feig
    posted to binding free_energy mmpbsa protonation by dmobley on 2008-02-27 17:26:21 as ** along with 4 people and 1 group mijogiffin sobolevnrm sunhwan boris_aguilar baker-group
  • Polyphosphoinositides undergo charge neutralization in the physiological pH range: a 31P-NMR study.
    Biochimica et biophysica acta, Vol. 877, No. 1. (11 June 1986), pp. 216-219.
    by PA van Paridon, B de Kruijff, R Ouwerkerk, KW Wirtz
    posted to charge nmr pip2 protonation by dimka on 2008-05-07 21:21:36 as **
  • Probing ion-channel pores one proton at a time
    Nature, Vol. 438, No. 7070. (15 December 2005)), pp. 975-980.
    by Gisela D Cymes, Ying Ni, Claudio Grosman
    posted to acetylcholine achr channel protonation by dimka on 2005-12-17 21:30:15 as **
  • Protein-protein binding is often associated with changes in protonation state
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Aaron C Mason, Jan H Jensen
    posted to protonation protein docking by csrocha on 2008-09-14 04:36:29 as **** along with 5 people and 3 groups bicko chad_davis sobolevnrm RamuAnandakrishnan barry baker-group structural_bioinformatics McCammon
  • An assessment of the accuracy of methods for predicting hydrogen positions in protein structures.
    Proteins, Vol. 61, No. 2. (1 November 2005), pp. 296-309.
    by LR Forrest, B Honig
    posted to mcce protonation by cat_worth on 2007-10-11 14:33:58 as ** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • Patterns in ionizable side chain interactions in protein structures
    Proteins: Structure, Function, and Genetics, Vol. 24, No. 4. (1996), pp. 439-449.
    by Daniele Gandini, Luca Gogioso, Martino Bolognesi, Domenico Bordo
    posted to hydrogen_bonding protonation by cat_worth on 2007-10-26 12:29:54 as **
  • Protonate3D: Assignment of ionization states and hydrogen coordinates to macromolecular structures
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 999A. (2008), NA.
    by Paul Labute
    posted to protonation bioinf_methods by barry on 2008-10-02 20:36:05 as * along with 2 people middledomain RamuAnandakrishnan
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