Tag protonation [17 articles] Export

Recent papers classified by the tag protonation.

	Observation of Ionic Lock Formation in Molecular Dynamics Simulations of Wild Type 1 and 2 Adrenergic Receptors. [My Copy] Biochemistry (20 April 2009) by Stefano Vanni, Marilisa Neri, Ivano Tavernelli, Ursula Rothlisberger posted to activation b2ar dry dynamics flexibility ionic lock md protonation solvation switch tm3 tm6 water by xdeupi on 2009-05-06 09:56:27 as along with 3 people and 1 group arnaucordomi jmccammon agrossfield McCammon
	Fourier transform infrared difference spectroscopy of rhodopsin mutants: light activation of rhodopsin causes hydrogen-bonding change in residue aspartic acid-83 during meta II formation. [My Copy] Biochemistry, Vol. 32, No. 39. (5 October 1993), pp. 10277-10282. by P. Rath, L. L. DeCaluwé, P. H. Bovee-Geurts, W. J. DeGrip, K. J. Rothschild posted to activation d250 protonation rhodopsin spectroscopy switch by xdeupi on 2009-03-20 11:55:44 as
	Protonation states of membrane-embedded carboxylic acid groups in rhodopsin and metarhodopsin II: a Fourier-transform infrared spectroscopy study of site-directed mutants. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 90, No. 21. (1 November 1993), pp. 10206-10210. by K. Fahmy, F. Jäger, M. Beck, T. A. Zvyaga, T. P. Sakmar, F. Siebert posted to activation d250 protonation rhodopsin spectroscopy switch by xdeupi on 2009-03-20 11:48:33 as
	Polar hydrogen positions in proteins: empirical energy placement and neutron diffraction comparison. [My Copy] Proteins, Vol. 4, No. 2. (1988), pp. 148-156. by A. T. Brünger, M. Karplus posted to interactions protonation software by dfgreen on 2009-01-08 22:59:43 as along with 1 person csrocha
	Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. [My Copy] J Mol Biol, Vol. 285, No. 4. (29 January 1999), pp. 1735-1747. by J. M. Word, S. C. Lovell, J. S. Richardson, D. C. Richardson posted to interactions packing protonation software by dfgreen on 2009-01-08 22:58:46 as along with 4 people and 2 groups kaarsinogen jwm j3xucite blackbart Radiation_Damage Stressosome
	Protonate3D: Assignment of ionization states and hydrogen coordinates to macromolecular structures [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 999A. (2008), NA. by Paul Labute posted to bioinf_methods protonation by barry on 2008-10-02 20:36:05 as along with 2 people middledomain RamuAnandakrishnan
	Protein-protein binding is often associated with changes in protonation state [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Aaron C. Mason, Jan H. Jensen posted to docking protein protonation by csrocha on 2008-09-14 04:36:29 as along with 6 people and 3 groups flbarroso onufriev bicko sobolevnrm RamuAnandakrishnan barry baker-group structural_bioinformatics McCammon
	Polyphosphoinositides undergo charge neutralization in the physiological pH range: a 31P-NMR study. [My Copy] Biochimica et biophysica acta, Vol. 877, No. 1. (11 June 1986), pp. 216-219. by P. A. van Paridon, B. de Kruijff, R. Ouwerkerk, K. W. Wirtz posted to charge nmr pip2 protonation by dimka on 2008-05-07 21:21:36 as
	Accurate prediction of protonation state as a prerequisite for reliable MM-PB(GB)SA binding free energy calculations of HIV-1 protease inhibitors [My Copy] Journal of Computational Chemistry, Vol. 29, No. 5. (2008), pp. 673-685. by Kitiyaporn Wittayanarakul, Supot Hannongbua, Michael Feig posted to binding free_energy mmpbsa protonation by dmobley on 2008-02-27 17:26:21 as along with 4 people and 1 group mijogiffin sobolevnrm sunhwan boris_aguilar baker-group
	Patterns in ionizable side chain interactions in protein structures [My Copy] Proteins: Structure, Function, and Genetics, Vol. 24, No. 4. (1996), pp. 439-449. by Daniele Gandini, Luca Gogioso, Martino Bolognesi, Domenico Bordo posted to hydrogen_bonding protonation by cat_worth on 2007-10-26 12:29:54 as
	An assessment of the accuracy of methods for predicting hydrogen positions in protein structures. [My Copy] Proteins, Vol. 61, No. 2. (1 November 2005), pp. 296-309. by L. R. Forrest, B. Honig posted to mcce protonation by cat_worth on 2007-10-11 14:33:58 as along with 2 people and 2 groups flbarroso ana structural_bioinformatics Bioinformatics
	Proton movement and photointermediate kinetics in rhodopsin mutants. [My Copy] Biochemistry, Vol. 45, No. 17. (2 May 2006), pp. 5430-5439. by J. W. Lewis, I. Szundi, M. A. Kazmi, T. P. Sakmar, D. S. Kliger posted to activation protonation rhodopsin by xdeupi on 2007-07-30 17:00:28 as along with 1 group LabCompMed
	Experiments Suggest that Simulations May Overestimate Electrostatic Contributions to the Mechanical Stability of a Fibronectin Type III Domain. [My Copy] J Mol Biol (9 June 2007) by Sean P P. Ng, Jane Clarke posted to stability protonation by cat_worth to the group structural_bioinformatics on 2007-07-02 11:38:51 as along with 1 person choonpeng
	Structures and spectral signatures of protonated water networks in bacteriorhodopsin. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 6980-6985. by G. Mathias, D. Marx posted to activation gpcr protonation rhodopsin theory water by xdeupi on 2007-06-11 10:25:44 as along with 2 people and 1 group vahmurk saravan LabCompMed
	Environmental effects on the protonation states of active site residues in bacteriorhodopsin. [My Copy] Biophys J, Vol. 66, No. 5. (May 1994), pp. 1341-1352. by R. V. Sampogna, B. Honig posted to protonation active_site by cat_worth to the group structural_bioinformatics on 2007-02-07 12:20:35 as
	A conserved carboxylic acid group mediates light-dependent proton uptake and signaling by rhodopsin. [My Copy] J Biol Chem, Vol. 269, No. 39. (30 September 1994), pp. 23879-23881. by S. Arnis, K. Fahmy, K. P. Hofmann, T. P. Sakmar posted to activation dry gpcr ionic lock mutation protonation rhodopsin tm3 by xdeupi to the group LabCompMed on 2006-05-31 15:55:30 as
	Probing ion-channel pores one proton at a time [My Copy] Nature, Vol. 438, No. 7070. (15 December 2005)), pp. 975-980. by Gisela D. Cymes, Ying Ni, Claudio Grosman posted to acetylcholine achr channel protonation by dimka on 2005-12-17 21:30:15 as

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activation	9
rhodopsin	8
gpcr	4
dry	3
ionic	3
lock	3
switch	3
tm3	3
water	3
active_site	2
d250	2
interactions	2
mutation	2
pman	2
software	2
spectroscopy	2
stability	2
theory	2
acetylcholine	1
achr	1
b2ar	1
binding	1
bioinf_methods	1
channel	1
charge	1
constant-ph	1
docking	1
dynamics	1
flexibility	1
free_energy	1
hydrogen_bonding	1
mcce	1
md	1
mmpbsa	1
nmr	1
packing	1
pip2	1
protein	1
solvation	1
tm6	1
tprop	1

Tag protonation [17 articles] Export

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