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Tag pseudogene [33 articles]

Recent papers classified by the tag pseudogene.
  • Stem cell regulatory function mediated by expression of a novel mouse Oct4 pseudogene
    Biochemical and Biophysical Research Communications, Vol. 355, No. 1. (30 March 2007), pp. 111-116.
    by Huey Lin, Arsalan Shabbir, Merced Molnar, Techung Lee
    posted to pou5f1 pseudogene stemcells by xingxu on 2007-08-17 17:04:02 as **
  • An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene.
    Nature, Vol. 423, No. 6935. (1 May 2003), pp. 91-96.
    by S Hirotsune, N Yoshida, A Chen, L Garrett, F Sugiyama, S Takahashi, K Yagami, A Wynshaw-Boris, A Yoshiki
    posted to pseudogene regulation by xingxu on 2008-05-19 17:09:57 as ** along with 2 people and 1 group imouthesmp wrowell Cline_lab
  • Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by JE Karro, Y Yan, D Zheng, Z Zhang, N Carriero, P Cayting, P Harrrison, M Gerstein
    posted to platform pseudogene by xingxu on 2007-08-17 17:29:05 as ** along with 1 person alexl
  • PseudoPipe: an automated pseudogene identification pipeline.
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1437-1439.
    by Z Zhang, N Carriero, D Zheng, J Karro, PM Harrison, M Gerstein
    posted to bioinformatics pseudogene by xingxu on 2007-08-17 17:29:35 as ** along with 3 people operon alexl Jporci
  • Oct4 pseudogenes are transcribed in cancers
    Biochemical and Biophysical Research Communications, Vol. 337, No. 4. (2 December 2005), pp. 1047-1051.
    by Guangli Suo, Jin Han, Xia Wang, Jingyu Zhang, Yannan Zhao, Yanhong Zhao, Jianwu Dai
    posted to pou5f1 pseudogene by xingxu on 2007-08-17 17:02:10 as ** along with 1 person tuck
  • Oct4 and Its Pseudogenes Confuse Stem Cell Research
    Cell Stem Cell, Vol. 1, No. 4. (11 October 2007), pp. 364-366.
    by Stefanie Liedtke, Jürgen Enczmann, Simon Waclawczyk, Peter Wernet, Gesine Kögler
    posted to pou5f1 pseudogene by xingxu on 2008-05-19 21:11:52 as **
  • The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?
    Trends Genet, Vol. 23, No. 5. (May 2007), pp. 219-224.
    by D Zheng, MB Gerstein
    posted to pseudogene review by xingxu on 2007-08-17 17:28:10 as ** along with 1 person shoshin
  • Large-scale analysis of pseudogenes in the human genome
    Current Opinion in Genetics & Development, Vol. 14, No. 4. (August 2004), pp. 328-335.
    by Zhaolei Zhang, Mark Gerstein
    posted to genomics pseudogene by xingxu on 2007-08-17 17:29:57 as **
  • Multiple Retropseudogenes from Pluripotent Cell-specific Gene Expression Indicates a Potential Signature for Novel Gene Identification
    J. Biol. Chem., Vol. 280, No. 8. (25 February 2005), pp. 6265-6268.
    by Debleena Pain, Gung-Wei Chirn, Christopher Strassel, Daniel M Kemp
    posted to pou5f1 pseudogene stemcells by xingxu on 2008-05-19 16:18:35 as **
  • Pseudogene evolution in Drosophila suggests a high rate of DNA loss.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1562-1567.
    by DA Petrov, YC Chao, EC Stephenson, DL Hartl
    posted to deletion dna drosophila genome loss molevoltestis pseudogene by skumagai on 2008-06-06 14:39:07 as read along with 1 person and 1 group dpollard EisenLab
  • Genome-wide survey for biologically functional pseudogenes.
    PLoS Comput Biol, Vol. 2, No. 5. (May 2006)
    by O Svensson, L Arvestad, J Lagergren
    posted to bioinformatics pseudogene by renatomilani on 2008-06-18 20:35:12 as ** along with 3 people and 2 groups bsmagic cjeans smbe2008 Bioinformatics bioinplant
  • Analysis of Nuclear Receptor Pseudogenes in Vertebrates: How the Silent Tell Their Stories
    Mol Biol Evol (7 December 2007), msm251.
    by Zhengdong D Zhang, Philip Cayting, George Weinstock, Mark Gerstein
    posted to evolution pseudogene by renatomilani on 2007-12-14 17:59:02 as **
  • Statistical Alignment of Retropseudogenes and Their Functional Paralogs
    Molecular Biology and Evolution, Vol. 22, No. 12. (December 2005), pp. 2457-2471.
    by Miklos Csuros, Istvan Miklos
    posted to evolution master paralog pseudogene transposon by operon on 2008-03-07 12:29:34 as ** along with 1 person bpcusack
  • Simulating pseudogene evolution in vitro: determining the true number of mutations in a lineage.
    Proc Natl Acad Sci U S A, Vol. 98, No. 23. (6 November 2001), pp. 13172-13176.
    by JP Vartanian, M Henry, S Wain-Hobson
    posted to evolution master pseudogene reduction by operon on 2008-03-02 17:18:37 as **
  • Automatic annotation of eukaryotic genes, pseudogenes and promoters
    Genome Biology, Vol. 7, No. Suppl 1. (2006)
    by Victor Solovyev, Peter Kosarev, Igor Seledsov, Denis Vorobyev
    posted to genomics master pseudogene by operon on 2008-01-24 17:54:55 as ** along with 1 person wenhan
  • Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes.
    Genome Biol, Vol. 5, No. 9. (2004)
    by Y Liu, PM Harrison, V Kunin, M Gerstein
    posted to evolution master prokaryote pseudogene by operon on 2008-01-24 17:52:28 as ** along with 2 people and 1 group azazello alexl MBLAB
  • Pseudogenes: are they "junk" or functional DNA?
    Annu Rev Genet, Vol. 37 (2003), pp. 123-151.
    by ES Balakirev, FJ Ayala
    posted to pseudogene tez by olympos on 2007-11-18 20:45:02 as **
  • Integrated Pseudogene Annotation for Human Chromosome 22: Evidence for Transcription
    Journal of Molecular Biology, Vol. 349, No. 1. (27 May 2005), pp. 27-45.
    by Deyou Zheng, Zhaolei Zhang, Paul M Harrison, John Karro, Nick Carriero, Mark Gerstein
    posted to pseudogene tez by olympos on 2007-11-18 20:44:04 as **
  • Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 839-851.
    by D Zheng, A Frankish, R Baertsch, P Kapranov, A Reymond, SW Choo, Y Lu, F Denoeud, SE Antonarakis, M Snyder, Y Ruan, CL Wei, TR Gingeras, R Guigó, J Harrow, MB Gerstein
    posted to pseudogene tez by olympos on 2007-11-18 21:17:37 as ** along with 2 people and 3 groups dchughes ghattem Bioinformatics G4ID Genetics-of-Gambling
  • PseudoGeneQuest - Service for identification of different pseudogene types in the human genome
    BMC Bioinformatics, Vol. 9 (02 July 2008), 299.
    by Csaba Ortutay, Mauno Vihinen
    posted to pseudogene by jyuh on 2008-07-25 16:34:27 as **
  • Rapid evolution of a recently retroposed transcription factor YY2 in mammalian genomes,
    Genomics, Vol. 87, No. 3. (March 2006), pp. 348-355.
    by Chunqing Luo, Xiaochen Lu, Lisa Stubbs, Joomyeong Kim
    posted to pseudogene retrotransposition by dchughes to the group G4ID on 2006-02-12 19:34:13 as ** along with 1 group Genetics-of-Gambling
  • Genome-wide identification of pseudogenes capable of disease-causing gene conversion.
    Hum Mutat, Vol. 27, No. 6. (2 May 2006), pp. 545-552.
    by Jared M M Bischof, Annie P P Chiang, Todd E E Scheetz, Edwin M M Stone, Thomas L L Casavant, Val C C Sheffield, Terry A A Braun
    posted to gene-conversion pseudogene by dchughes to the group G4ID on 2006-05-17 10:51:11 as ** along with 1 group Genetics-of-Gambling
  • Processed Pseudogenes Are More Abundant in Human and Mouse X Chromosomes than in Autosomes
    Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1652-1655.
    by Guy Drouin
    posted to pseudogene retrotransposition by dchughes to the group G4ID on 2006-08-02 11:06:10 as ** along with 1 group Genetics-of-Gambling
  • Identification and Analysis of Genes and Pseudogenes within Duplicated Regions in the Human and Mouse Genomes
    PLoS Computational Biology, Vol. 2, No. 6. (1 June 2006), e76.
    by Mikita Suyama, Eoghan Harrington, Peer Bork, David Torrents
    posted to comparative-analysis pseudogene by dchughes to the group G4ID on 2006-07-01 08:48:35 as ** along with 1 group Genetics-of-Gambling
  • The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?
    Trends in Genetics, Vol. 23, No. 5. (May 2007), pp. 219-224.
    by Deyou Zheng, Mark B Gerstein
    posted to pseudogene by dchughes to the group G4ID on 2007-04-25 12:31:20 as ** along with 1 group Genetics-of-Gambling
  • Genomic fossils as a snapshot of the human transcriptome
    PNAS, Vol. 103, No. 5. (31 January 2006), pp. 1364-1369.
    by Ronen Shemesh, Amit Novik, Sarit Edelheit, Rotem Sorek
    posted to pseudogene retrotransposition by dchughes to the group G4ID on 2006-03-24 11:56:36 as ** along with 2 people and 1 group tabu grahamc Genetics-of-Gambling
  • Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes
    Gene, Vol. 389, No. 2. (15 March 2007), pp. 196-203.
    by Hiroaki Sakai, Kanako O Koyanagi, Tadashi Imanishi, Takeshi Itoh, Takashi Gojobori
    posted to retrotransposition retrogene pseudogene by dchughes to the group G4ID on 2007-02-07 10:47:11 as ** along with 1 group Genetics-of-Gambling
  • Origin and Evolution of Processed Pseudogenes That Stabilize Functional Makorin1 mRNAs in Mice, Primates and Other Mammals
    Genetics, Vol. 172, No. 4. (1 April 2006), pp. 2421-2429.
    by Satoko Kaneko, Ikuko Aki, Kaoru Tsuda, Kazuyuki Mekada, Kazuo Moriwaki, Naoyuki Takahata, Yoko Satta
    posted to pseudogene by dchughes to the group G4ID on 2006-04-25 11:06:25 as ** along with 1 group Genetics-of-Gambling
  • Gene duplication: the genomic trade in spare parts.
    PLoS Biol, Vol. 2, No. 7. (July 2004)
    by M Hurles
    posted to gene_duplication neofunctionalization pseudogene subfunctionalization by ana to the group Bioinformatics on 2005-05-06 22:11:53 as ** along with 3 people and 1 group mtruksa barry signalduplication structural_bioinformatics
  • The coding/non-coding overlapping architecture of the gene encoding the Drosophila pseudouridine synthase
    BMC Molecular Biology, Vol. 8 (28 February 2007), 15.
    by Sara Riccardo, Giuseppe Tortoriello, Ennio Giordano, Mimmo Turano, Maria Furia
    posted to mirna multifunction pseudogene by andersbj to the group microRNA on 2007-03-03 16:51:16 as **
  • Pseudogene evolution and natural selection for a compact genome.
    J Hered, Vol. 91, No. 3. (n 2000), pp. 221-227.
    by DA Petrov, DL Hartl
    posted to drosophila genome_architecture genome_size indels pseudogene selection by dpollard to the group EisenLab on 2007-11-14 21:01:00 as **
  • Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
    Nature (10 April 2008)
    by Oliver H Tam, Alexei A Aravin, Paula Stein, Angelique Girard, Elizabeth P Murchison, Sihem Cheloufi, Emily Hodges, Martin Anger, Ravi Sachidanandam, Richard M Schultz, Gregory J Hannon
    posted to ncrna pseudogene by eskay on 2008-05-26 15:10:27 as *** along with 3 people gjuggler rschulz inesdesantiago
  • Loss of Egg Yolk Genes in Mammals and the Origin of Lactation and Placentation
    PLoS Biology, Vol. 6, No. 3. (1 March 2008), e63.
    by David Brawand, Walter Wahli, Henrik Kaessmann
    posted to comparative_genomics convergent_evolution egg_yolk indel lactation mammalian_evolution marsupial pseudogene by biomcgary on 2008-03-18 16:31:42 as ** along with 1 person sunhwan
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