Tag pubmed-mining [35 articles] Export

Recent papers classified by the tag pubmed-mining.

	Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results [My Copy] Journal of Biomedical Discovery and Collaboration, Vol. 3 (15 February 2008), 2. by Neil R. Smalheiser, Wei Zhou, Vetle I. Torvik posted to pubmed-mining by Enro on 2008-04-07 09:07:48 as along with 7 people and 1 group mitko Effie A_Hoogendam guhjy Gaetan spinaltap526 yas NaCTeM
	A quantitative model for linking two disparate sets of articles in MEDLINE [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1658-1665. by Vetle I. Torvik, Neil R. Smalheiser posted to knowledge-discovery pubmed-mining by Enro on 2007-06-29 14:57:03 as along with 7 people and 1 group artaban421 lmichan mitko guhjy yas dullhunk florianleitner T_lab
	MedMiner: An Internet Tool for Filtering and Organizing Gene Expression and Pharmacological Information [My Copy] by L. Tanabe, U. Scherf, L. Smith, J. Lee, L. Hunter, J. Weinstein posted to pubmed-mining by Enro on 2006-12-28 17:26:57 as along with 1 person and 1 group bundschu generif_paper
	Imitating Manual Curation of Text-Mined Facts in Biomedicine [My Copy] PLoS Comput Biol, Vol. 2, No. 9. (8 September 2006), e118. by Raul Rodriguez-Esteban, Ivan Iossifov, Andrey Rzhetsky posted to pubmed-mining text-mining by Enro on 2006-12-28 17:25:54 as along with 4 people and 1 group abhishek_tiwari jfr yas dullhunk T_lab
	ADAM: another database of abbreviations in MEDLINE [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2813-2818. by Wei Zhou, Vetle I. Torvik, Neil R. Smalheiser posted to pubmed-mining by Enro on 2006-11-05 08:07:06 as along with 2 people artaban421 yas
	PubFocus: semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (02 October 2006), 424. by Maksim Plikus, Zina Zhang, Cheng M. Chuong posted to citation-databases pubmed-mining by Enro on 2006-10-06 13:28:19 as along with 10 people and 2 groups artaban421 lmichan dmolla daforerog ajaymalik irenas yas dullhunk Gaetan adoms dbk-lab T_lab
	Using the biological taxonomy to access biological literature with PathBinderH [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2560-2562. by J. Ding, K. Viswanathan, D. Berleant, et al.L. Hughes, E. Wurtele, D. Ashlock, J. Dickerson, A. Fulmer, P. Schnable posted to pubmed-mining by Enro on 2006-09-05 13:56:33 as along with 1 person martingerner
	Automatic document classification of biological literature. [My Copy] BMC bioinformatics, Vol. 7, No. 1. (07 August 2006), 370. by David Chen, Hans-Michael M. Müller, Paul W. Sternberg posted to pubmed-mining text-mining by Enro on 2006-09-05 08:07:21 as along with 7 people and 3 groups druvus thegoose2 liblab tharris irenas yas ananthrk C. elegans / WormBase dbk-lab T_lab
	Using literature and data to learn Bayesian networks as clinical models of ovarian tumors. [My Copy] Artif Intell Med, Vol. 30, No. 3. (March 2004), pp. 257-281. by P. Antal, G. Fannes, D. Timmerman, Y. Moreau, B. De Moor posted to pubmed-mining by Enro on 2006-09-05 08:02:57 as along with 1 person route145
	Automatic extraction of mutations from Medline and cross-validation with OMIM [My Copy] Nucl. Acids Res., Vol. 32, No. 1. (2 January 2004), pp. 135-142. by Dietrich Rebholz-Schuhmann, Stephane Marcel, Sylvie Albert, Ralf Tolle, Georg Casari, Harald Kirsch posted to pubmed-mining by Enro on 2006-09-05 07:58:24 as along with 4 people and 2 groups lesikv yas t11 caporaso T_lab biomedical-nlp
	botXminer: mining biomedical literature with a new web-based application. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by U. Mudunuri, R. Stephens, D. Bruining, D. Liu, F. J. Lebeda posted to pubmed-mining by Enro on 2006-07-26 09:30:14 as along with 2 people and 1 group guhjy yas T_lab
	Text-mining and information-retrieval services for molecular biology [My Copy] Genome Biology, Vol. 6, No. 7. (2005), 224. by Martin Krallinger, Alfonso Valencia posted to pubmed-mining by Enro on 2006-04-20 14:52:05 as along with 17 people and 6 groups carelcad artaban421 Scis0000002 martingerner lmichan henk-cul vkwn A_Hoogendam fisherp irenas carlblesius textoris yas caporaso shimah78us cjeans spinaltap526 dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab biomedical-nlp
	Status of text-mining techniques applied to biomedical text [My Copy] Drug Discovery Today, Vol. 11, No. 7-8. (April 2006), pp. 315-325. by R. Erhardt, R. Schneider, C. Blaschke posted to pubmed-mining by Enro on 2006-04-03 07:04:48 as along with 18 people and 2 groups holopoj mitko fisherp liblab svozil Zephyrus ogenex lesikv henk-cul bqchinh guhjy hpiwowar ibuch mroos TheresaNiederberger akastrin aliekens irenas Bioinformatics AID
	PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by Thomas Goetz, Claus-Wilhelm W. von der Lieth posted to pubmed-mining by Enro on 2006-03-28 18:14:58 as along with 8 people and 2 groups artaban421 daforerog cisevol jarek yas jodi Carol_Perryman adoms BergmanLab T_lab
	Accomplishments and challenges in literature data mining for biology. [My Copy] Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1553-1561. by L. Hirschman, J. C. Park, J. Tsujii, L. Wong, C. H. Wu posted to bib bio bioinformatics literature-mining msc nlp onto pubmed-mining review text-mining txtmining by kehan on 2006-03-23 15:46:21 as along with 7 people and 6 groups irenas Enro yas benny caporaso vlachmore satre dbk-lab biodiversity_conservation Bioinformatics T_lab biomedical-nlp GrassBase
	Computing fuzzy associations for the analysis of biological literature. [My Copy] Biotechniques, Vol. 32, No. 6. (June 2002) by C. Perez-Iratxeta, H. S. Keer, P. Bork, M. A. Andrade posted to pubmed-mining by Enro on 2006-01-31 11:06:03 as along with 2 people katja miguel
	Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families. [My Copy] Bioinformatics, Vol. 14, No. 7. (1998), pp. 600-607. by M. A. Andrade, A. Valencia posted to pubmed-mining by Enro on 2006-01-31 11:05:46 as along with 1 person miguel
	Beyond the clause: extraction of phosphorylation information from medline abstracts. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (1 June 2005) by M. Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker posted to pubmed-mining by Enro on 2006-01-31 11:05:28 as along with 3 people miguel zlu neils
	Automatic extraction of biological information from scientific text: protein-protein interactions. [My Copy] Proc Int Conf Intell Syst Mol Biol (1999), pp. 60-67. by C. Blaschke, M. A. Andrade, C. Ouzounis, A. Valencia posted to pubmed-mining by Enro on 2006-01-31 11:04:34 as along with 6 people and 3 groups miguel yas helliontroy bundschu TheresaNiederberger satre T_lab biomedical-nlp generif_paper
	XplorMed: a tool for exploring MEDLINE abstracts. [My Copy] Trends Biochem Sci, Vol. 26, No. 9. (September 2001), pp. 573-575. by C. Perez-Iratxeta, P. Bork, M. A. Andrade posted to pubmed-mining by Enro on 2006-01-31 11:04:00 as along with 3 people and 1 group miguel yas fisherp T_lab
	Automated extraction of information in molecular biology. [My Copy] FEBS Lett, Vol. 476, No. 1-2. (30 June 2000), pp. 12-17. by M. A. Andrade, P. Bork posted to pubmed-mining by Enro on 2006-01-31 11:00:49 as along with 2 people and 1 group miguel yas T_lab
	BioContrasts: extracting and exploiting protein-protein contrastive relations from biomedical literature. [My Copy] Bioinformatics (20 December 2005) by Jung-Jae J. Kim, Zhuo Zhang, Jong C C. Park, See-Kiong K. Ng posted to pubmed-mining by Enro on 2006-01-31 10:59:27 as along with 4 people and 1 group guhjy bqchinh miguel yas T_lab
	Literature mining for the biologist: from information retrieval to biological discovery [My Copy] Nature Reviews Genetics, Vol. 7, No. 2. (01 February 2006), pp. 119-129. by Lars J. Jensen, Jasmin Saric, Peer Bork posted to literature-mining pubmed-mining by Enro on 2006-01-30 14:30:39 as along with 47 people and 4 groups tanyacovi6 MARCOUNAM eudominguezmartin sm-rush LEONRANGEL artaban421 rocling bertelsen virolog dipenps druvus Zephyrus fgibson psique lmichan cisevol ilyashl henk-cul daforerog isimpson dansullivanblk yggdrasil guhjy kuhn yas dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox jdiggans cjeans ghattem michaelmampaey dejori jandot mircea farzanehs larsjuhljensen adoms skumagai TheresaNiederberger satre akastrin ibuch BergmanLab T_lab biomedical-nlp ADMiRes
	Text mining: Generating hypotheses from MEDLINE [My Copy] Journal of the American Society for Information Science and Technology, Vol. 55, No. 5. (16 March 2003), pp. 396-413. by Padmini Srinivasan posted to bibliographic-databases literature-mining pubmed-mining by Enro on 2005-12-14 14:55:25 as along with 6 people and 1 group vkwn jasonzou route145 yas fisherp sentausa T_lab
	Hairpins in bookstacks: Information retrieval from biomedical text [My Copy] Briefings in Bioinformatics, Vol. 6, No. 3. (September 2005), pp. 222-238. by Hagit Shatkay posted to literature-mining pubmed-mining by Enro on 2005-12-14 10:15:24 as along with 1 person benny
	Improving literature based discovery support by genetic knowledge integration. [My Copy] Stud Health Technol Inform, Vol. 95 (2003), pp. 68-73. by D. Hristovski, B. Peterlin, J. A. Mitchell, S. M. Humphrey posted to pubmed-mining by Enro on 2005-11-28 12:36:48 as along with 2 people and 1 group BioGeek waltsb PBRC_HGL
	Snowball: a prototype system for extracting relations from large text collections [My Copy] In SIGMOD '01: Proceedings of the 2001 ACM SIGMOD international conference on Management of data, Vol. 30, No. 2. (June 2001) by Eugene Agichtein, Luis Gravano, Jeff Pavel, Viktoriya Sokolova, Aleksandr Voskoboynik posted to pubmed-mining by Enro on 2005-11-27 22:42:27 as along with 2 people and 1 group irenas topher dbk-lab
	MedlineR: an open source library in R for Medline literature data mining. [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3659-3661. by S. M. Lin, P. McConnell, K. F. Johnson, J. Shoemaker posted to pubmed-mining by Enro on 2005-11-27 22:42:16 as along with 5 people and 2 groups cisevol druvus irenas BioGeek za BergmanLab dbk-lab
	Mining the biomedical literature in the genomic era: an overview. [My Copy] J Comput Biol, Vol. 10, No. 6. (2003), pp. 821-855. by H. Shatkay, R. Feldman posted to pubmed-mining by Enro on 2005-11-27 22:42:04 as along with 12 people and 3 groups artaban421 mitko lmichan henk-cul cisevol irenas miguel yas benny balex adoms aheilbut BergmanLab dbk-lab T_lab
	Getting to the (c)ore of knowledge: mining biomedical literature. [My Copy] Int J Med Inform, Vol. 67, No. 1-3. (4 December 2002), pp. 7-18. by B. de Bruijn, J. Martin posted to pubmed-mining by Enro on 2005-11-27 22:41:43 as along with 4 people and 3 groups svozil irenas yas hpiwowar Bioinformatics dbk-lab T_lab
	BioRAT: extracting biological information from full-length papers [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3206-3213. by David P. A. Corney, Bernard F. Buxton, William B. Langdon, David T. Jones posted to pubmed-mining by Enro on 2005-11-27 22:41:07 as along with 13 people and 7 groups robert85 svozil cisevol arafalov camster snuppepuppan irenas guhjy A_Olympia helliontroy massivemayhem sobolevnrm satre Bioinformatics BergmanLab Philosophy_of_Information dbk-lab Blog_and_Wiki_Research biomedical-nlp baker-group
	Biomedical literature mining: challenges and solutions in the 'omics' era. [My Copy] Am J Pharmacogenomics, Vol. 4, No. 6. (2004), pp. 383-393. by D. Chaussabel posted to pubmed-mining by Enro on 2005-11-27 22:40:46 as along with 4 people and 1 group irenas andytseng qfwills daniel_schober dbk-lab
	MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations. [My Copy] Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 694-695. by J. Ding, D. Berleant posted to pubmed-mining by Enro on 2005-11-27 22:40:32 as along with 2 people and 1 group irenas guhjy dbk-lab
	Extracting human protein interactions from MEDLINE using a full-sentence parser. [My Copy] Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 604-611. by N. Daraselia, A. Yuryev, S. Egorov, S. Novichkova, A. Nikitin, I. Mazo posted to pubmed-mining by Enro on 2005-11-27 22:39:57 as along with 8 people and 2 groups henk-cul liblab bqchinh irenas miguel natsu zlu satre dbmi-nlp dbk-lab
	MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling. [My Copy] Biotechniques, Vol. 27, No. 6. (December 1999) by L. Tanabe, U. Scherf, L. H. Smith, J. K. Lee, L. Hunter, J. N. Weinstein posted to pubmed-mining by Enro on 2005-11-27 22:37:31 as along with 4 people and 2 groups fisherp irenas yas simmie dbk-lab T_lab