Tag pwm [47 articles] Export

Recent papers classified by the tag pwm.

	DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (26 November 2009), 388. by Isabelle da Piedade, Man Hung Eric Tang, Olivier Elemento posted to pwm motif_discovery by oelemento on 2009-11-28 00:13:27 as along with 4 people idonaldson maximilianh barriot bedo
	MOODS: fast search for position weight matrix matches in DNA sequences [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3181-3182. by Janne Korhonen, Petri Martinmaki, Cinzia Pizzi, Pasi Rastas, Esko Ukkonen posted to weight pwm pssm position matrix matching dna by Stew to the group Bioinformatics - CRUK on 2009-11-23 11:28:44 as along with 4 people and 1 group idonaldson ppgardne farhat djkt Journal picks
	Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling [My Copy] Cell, Vol. 139, No. 3. (30 October 2009), pp. 610-622. by Shaohui Hu, Zhi Xie, Akishi Onishi, et al.Xueping Yu, Lizhi Jiang, Jimmy Lin, Hee-sool Rho, Crystal Woodard, Hong Wang, Jun-Seop Jeong posted to pwmimprovement pwm matrix by maximilianh on 2009-11-10 17:48:51 as along with 3 people tmmurali renatomilani idonaldson
	Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli. [My Copy] Nucleic acids research, Vol. 10, No. 9. (11 May 1982), pp. 2997-3011. by G. D. Stormo, T. D. Schneider, L. Gold, A. Ehrenfeucht posted to weight translation site pwm position matrix initiation by Mehlhorn on 2009-10-28 16:17:32 as along with 1 person dquest
	A common sequence motif associated with recombination hot spots and genome instability in humans. [My Copy] Nature genetics, Vol. 40, No. 9. (September 2008), pp. 1124-1129. by Simon Myers, Colin Freeman, Adam Auton, Peter Donnelly, Gil McVean posted to recombination pwm prdm6 motif insability human hot_spot genome by Stew to the group Bioinformatics - CRUK on 2009-10-02 10:53:55 as along with 1 person bpcusack
	Enhanced position weight matrices using mixture models. [My Copy] Bioinformatics (Oxford, England), Vol. 21 Suppl 1 (June 2005) by S. Hannenhalli, L. S. Wang posted to binding-motif binding-site positional-weight-matrix pwm subclass by sebastien_vigneau on 2009-06-29 21:57:20 as
	Phylogeny based discovery of regulatory elements. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. Gertz, J. C. Fay, B. A. Cohen posted to crm footprinting hky85 motif phylogeny pwm regulation tfbs by pradiptaray on 2009-05-23 05:26:04 as along with 4 people and 2 groups druvus indigoviolet dquest cisevol EisenLab cis-regulatory-evolution
	Modeling dependencies in protein-DNA binding sites [My Copy] In RECOMB '03: Proceedings of the seventh annual international conference on Research in computational molecular biology (2003), pp. 28-37. by Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kaplan posted to bayesian_networks mixture_model pwm tfbs transcription transcription_regulation by siebert on 2009-05-14 14:45:39 as along with 1 person dquest
	Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii [My Copy] Nucl. Acids Res. (9 April 2009), gkp213. by Jian Zhang, Enhu Li, Gary J. Olsen posted to archaea mapping methanocaldococcus promoter pwm by neils on 2009-04-11 16:06:55 as
	New scoring schema for finding motifs in DNA Sequences [My Copy] BMC Bioinformatics, Vol. 10 (20 March 2009), 93. by Fatemeh, Bahram Goliaei posted to motifs position pwm by ElenaGrassi to the group cube_and_beyond on 2009-03-25 08:37:51 as along with 6 people bsamal svenrahmann cassj idonaldson maximilianh nuin
	Context-specific independence mixture modeling for positional weight matrices [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e166-173. by Benjamin Georgi, Alexander Schliep posted to mixture_model pwm tfbs transcription transcription_regulation by siebert on 2009-02-03 09:59:38 as
	GAPWM: a genetic algorithm method for optimizing a position weight matrix [My Copy] Bioinformatics In Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1188-1194. by Leping Li, Yu Liang, Robert L. Bass posted to motif pwm by yevishere on 2009-01-14 07:27:15 as along with 6 people and 1 group bsamal dpollard grahamc cjeans ghattem isimpson EisenLab
	The conservation pattern of short linear motifs is highly correlated with the function of interacting protein domains [My Copy] BMC Genomics, Vol. 9 (01 October 2008), 452. by Siyuan Ren, Guang Yang, Youyu He, Yiguo Wang, Yixue Li, Zhengjun Chen posted to domain proteininteraction pwm by barriot on 2008-10-02 06:01:07 as along with 2 people hryk neils
	Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules. [My Copy] Algorithms for molecular biology : AMB, Vol. 2 (10 October 2007), 13. by V. Boeva, J. Clément, M. Régnier, M. A. Roytberg, V. J. Makeev posted to crm dna pwm by beete on 2008-09-10 22:14:50 as along with 4 people wowalz idonaldson guos isimpson
	Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis. [My Copy] PLoS ONE, Vol. 2, No. 11. (2007) by R. K. Shultzaberger, D. Y. Chiang, A. M. Moses, M. B. Eisen posted to cns-similarity combination pwm by maximilianh on 2008-08-25 15:03:56 as
	Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors. [My Copy] Bioinformatics (Oxford, England) (27 June 2008) by Jiajian Liu, Gary D D. Stormo posted to pwm pwmimprovement by maximilianh on 2008-08-25 14:53:29 as along with 3 people dakelley aalibes nklee
	Efficient representation and P-value computation for high-order Markov motifs. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008), pp. i160-166. by P. G. da Fonseca, K. S. Guimarães, M. F. Sagot posted to markov motif pssm p-value pwm by Stew on 2008-08-11 09:08:07 as along with 2 people wowalz Evangelia
	DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e61. by Shaun Mahony, Philip E. Auron, Panayiotis V. Benos posted to evolution motif pwm regulation specificity by pradiptaray on 2008-08-07 16:12:34 as along with 4 people aalibes zwang nklee heliopais
	The statistical significance of nucleotide position-weight matrix matches [My Copy] Comput. Appl. Biosci., Vol. 12, No. 5. (1 October 1996), pp. 431-439. by Jean-Michel Claverie, Stephane Audic posted to bioinformatics matrix nucleotide pwm statistics by neils on 2008-05-14 06:41:04 as along with 2 people and 2 groups samal bsmagic Bioinformatics bioinplant
	Specificity, free energy and information content in protein-DNA interactions [My Copy] Trends in Biochemical Sciences, Vol. 23, No. 3. (1 March 1998), pp. 109-113. by Gary D. Stormo, Dana S. Fields posted to binding_site_model pwm by brant on 2008-04-24 05:21:09 as along with 3 people vphan erdos zambujo
	Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. [My Copy] Journal of molecular biology, Vol. 193, No. 4. (20 February 1987), pp. 723-750. by O. G. Berg, P. H. von Hippel posted to binding_site_model pwm by brant on 2008-04-24 05:19:32 as along with 9 people and 2 groups mox emptyhb jjray indigoviolet lusk discreteonyxorb cisevol Ema zambujo EisenLab cis-regulatory-evolution
	Digital PWM controller with one-bit noise-shaping interface [My Copy] Analog Integrated Circuits and Signal Processing, Vol. 49, No. 1. (October 2006), pp. 11-17. by Roh, Jeongjin posted to analogue pwm side by ChrisMorrison on 2008-03-10 16:34:42 as
	Harmonic elimination for constrained optimal PWM [My Copy] Industrial Electronics Society, 2004. IECON 2004. 30th Annual Conference of IEEE, Vol. 3 (2004), pp. 2702-2705 Vol. 3. by H. Huang, Shiyan Hu, D. Czarkowski posted to elmination harmonic pwm by ChrisMorrison on 2008-03-10 16:34:21 as
	An efficient method for statistical significance calculation of transcription factor binding sites. [My Copy] Bioinformation, Vol. 2, No. 5. (2007), pp. 169-174. by Z. Qian, L. Lu, L. Qi, Y. Li posted to matrix pwm pwmimprovement scanning by maximilianh on 2008-03-01 21:46:59 as along with 4 people and 1 group bsamal nklee idonaldson isimpson Motif Discovery
	Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560. by Christopher D. Brown, David S. Johnson, Arend Sidow posted to ciona cis-trans cluster cns-differences combination enhanceosome pwm by maximilianh on 2008-02-29 17:27:57 as along with 10 people and 2 groups pradiptaray dpollard djkt joepickrell zwang Garamonfok Stew mimulus_99 cisevol emptyhb EisenLab cis-regulatory-evolution
	DNA motif representation with nucleotide dependency. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 5, No. 1. (r 2008), pp. 110-119. by F. Chin, H. C. Leung posted to discovery pwm pwmimprovement by maximilianh on 2008-02-05 12:50:47 as along with 4 people wowalz AbnerCYH xili03 Stew
	A hybrid model for robust detection of transcription factor binding sites [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 484-491. by Sumedha Gunewardena, Zhaolei Zhang posted to discovery motif pwm scanning by maximilianh on 2008-01-12 11:11:46 as along with 4 people bsamal isimpson guhjy idonaldson
	A 250 W audio amplifier with straightforward digital input-PWM output conversion [My Copy] Solid-State Circuits Conference, 2001. ESSCIRC 2001. Proceedings of the 27th European In Solid-State Circuits Conference, 2001. ESSCIRC 2001. Proceedings of the 27th European (2001), pp. 225-228. by A. Grosso, E. Botti, F. Stefani, M. Ghioni posted to amplifier pwm by ChrisMorrison on 2008-01-04 16:33:58 as
	Bandwidth limits in PWM switching amplifiers [My Copy] Circuits and Systems, 2006. ISCAS 2006. Proceedings. 2006 IEEE International Symposium on In Circuits and Systems, 2006. ISCAS 2006. Proceedings. 2006 IEEE International Symposium on (2006), 4 pp.. by L. Marco, A. Poveda, E. Alarcon, D. Maksimovic posted to amplifier pwm by ChrisMorrison on 2008-01-04 16:19:40 as
	High-fidelity PWM inverter for digital audio amplification: Spectral analysis, real-time DSP implementation, and results [My Copy] Power Electronics, IEEE Transactions on In Power Electronics, IEEE Transactions on, Vol. 18, No. 1. (2003), pp. 473-485. by C. Pascual, Zukui Song, P. T. Krein, D. V. Sarwate, P. Midya, W. J. Roeckner posted to amplifier pwm by ChrisMorrison on 2008-01-04 16:13:30 as
	Low distortion digital pulse width modulation for audio class-D amplifier [My Copy] Communications and Information Technology, 2004. ISCIT 2004. IEEE International Symposium on In Communications and Information Technology, 2004. ISCIT 2004. IEEE International Symposium on, Vol. 1 (2004), pp. 515-518 vol.1. by A. Yoneya, A. Watanabe posted to amplifier distortion pwm by ChrisMorrison on 2008-01-04 16:10:28 as
	Digital correction of PWM switching amplifiers [My Copy] Power Electronics Letters, IEEE, Vol. 2, No. 2. (2004), pp. 68-72. by P. Midya, B. Roeckner, S. Bergstedt posted to amplifier feedback pwm by ChrisMorrison on 2008-01-04 15:51:10 as along with 1 person kujan
	High-fidelity PWM inverter for audio amplification based on real-time DSP [My Copy] Computers in Power Electronics, 2000. COMPEL 2000. The 7th Workshop on In Computers in Power Electronics, 2000. COMPEL 2000. The 7th Workshop on (2000), pp. 227-232. by C. Pascual, P. T. Krein, P. Midya, B. Roeckner posted to amplifier pwm by ChrisMorrison on 2008-01-04 15:48:22 as
	PWM Power Audio Amplifier With Voltage/Current Mixed Feedback for High-Efficiency Speakers [My Copy] Industrial Electronics, IEEE Transactions on In Industrial Electronics, IEEE Transactions on, Vol. 54, No. 2. (2007), pp. 1141-1149. by P. Adduci, E. Botti, E. Dallago, G. Venchi posted to amplifier current-feedback pwm voltage-feedback by ChrisMorrison on 2008-01-04 13:55:42 as
	A Precompensation Algorithm for PWM-Based Digital Audio Amplifiers for Portable Applications [My Copy] Circuits and Systems, 2007. ISCAS 2007. IEEE International Symposium on In Circuits and Systems, 2007. ISCAS 2007. IEEE International Symposium on (2007), pp. 1577-1580. by Xiaoxiang Gong, J. G. Harris posted to amplifier low-power pwm by ChrisMorrison on 2008-01-04 12:48:08 as
	High Resolution Pulse Width Modulators in FPGA [My Copy] Programmable Logic, 2007. SPL '07. 2007 3rd Southern Conference on In Programmable Logic, 2007. SPL '07. 2007 3rd Southern Conference on (2007), pp. 137-142. by Angel de Castro, Gustavo Sutter, Santa C. Huerta, Jose A. Cobos posted to amplifier fpga pwm by ChrisMorrison on 2008-01-04 12:38:12 as
	An FPGA Implementation of Finite Horizon Constrained Optimization for a Full Digital Amplifier [My Copy] American Control Conference, 2007. ACC '07 In American Control Conference, 2007. ACC '07 (2007), pp. 4047-4052. by Jwu-Sheng Hu, Keng-Yuan Chen posted to amplifier fpga pwm by ChrisMorrison on 2008-01-04 11:23:32 as
	Efficient and accurate P-value computation for Position Weight Matrices [My Copy] Algorithms for Molecular Biology, Vol. 2, No. 1. (2007) by Helene Touzet, Jean S. Varre posted to compexity pvalue pwm by barriot on 2007-12-12 05:59:11 as along with 2 people nklee xili03
	STOP: searching for transcription factor motifs using gene expression [My Copy] Bioinformatics In Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1737-1743. by Libi Hertzberg, Shai Izraeli, Eytan Domany posted to cutoff gene_expression pwm threshold by dpollard on 2007-05-23 00:44:29 as along with 2 people and 1 group bsamal nuin EisenLab
	STAMP: a web tool for exploring DNA-binding motif similarities [My Copy] Nucleic acids research In Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W253-258. by Shaun Mahony, Panayiotis V. Benos posted to alignment method motif pwm website by dpollard on 2007-05-23 00:40:45 as along with 4 people and 1 group bsamal yuslinaz aalibes raylim EisenLab
	Harmonic distortion reduction in multi-level PWM modulators for audio power amplifiers [My Copy] IECON 02 [Industrial Electronics Society, IEEE 2002 28th Annual Conference of the], Vol. 1 (2002), pp. 852-857 vol.1. by V. M. E. Antunes, V. F. Pires, J. F. Silva posted to audio multi pwm by kujan on 2007-03-26 11:02:25 as
	Discovering Motifs in Ranked Lists of DNA Sequences [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39. by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini posted to round_robin pwm prediction motif eisen_journal_club dan_presented chip_chip by dpollard to the group EisenLab on 2007-03-23 00:19:21 as along with 3 people heliopais dquest yevishere
	Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both. [My Copy] Curr Opin Genet Dev, Vol. 15, No. 4. (August 2005), pp. 395-402. by T. Vavouri, G. Elgar posted to binding_site cis_regulatory_elements method motif pattern prediction pwm regulatory_sequence by dpollard to the group EisenLab on 2007-03-15 00:24:34 as along with 6 people and 1 group troels_marstrand kaspermunch adepace lusk Stew brant Bioinformatics
	Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences [My Copy] Journal of Molecular Biology, Vol. 212, No. 4. (20 April 1990), pp. 563-578. by Philipp Bucher posted to pwm transcription_factor by tuck on 2006-12-19 03:35:40 as along with 1 person rsaito
	Position specific variation in the rate of evolution in transcription factor binding sites. [My Copy] BMC Evol Biol, Vol. 3, No. 1. (28 August 2003) by A. M. Moses, D. Y. Chiang, M. Kellis, E. S. Lander, M. B. Eisen posted to binding conserved constraint evolution noncoding pattern phylogeny prediction pwm rate selection specific transcription by dpollard on 2006-11-07 00:22:07 as along with 6 people and 2 groups briann adepace lusk nklee cisevol emptyhb EisenLab cis-regulatory-evolution
	MACO: A gapped-alignment scoring tool for comparing transcription factor binding sites. [My Copy] In Silico Biol, Vol. 6, No. 4. (29 May 2006) by Gang Su, Binchen Mao, Jin Wang posted to alignment matrix pwm similarity by dpollard to the group EisenLab on 2006-08-25 17:56:58 as
	Power quality improvement using integral-PWM control in an AC/AC voltage converter [My Copy] Electric Power Systems Research, Vol. 63, No. 1. (August 2002), pp. 65-71. by K. A. Nigim, G. T. Heydt posted to ac-voltage-converter power pwm by summerxia on 2005-12-06 22:30:48 as

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motif	15
amplifier	10
matrix	8
prediction	8
position	5
alignment	4
chip_chip	4
method	4
pattern	4
pwmimprovement	4
tfbs	4
transcription	4
dna	3
evolution	3
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binding_site_model	2
cis_regulatory_elements	2
combination	2
conserved	2
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crm	2
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dan_presented	2
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website	2
ac-voltage-converter	1
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bioinformatics	1
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enhanceosome	1
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harmonic	1
hky85	1
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motif_discovery	1
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translation	1

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