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Tag qual [69 articles]

Recent papers classified by the tag qual.
  • Mauve: multiple alignment of conserved genomic sequence with rearrangements.
    Genome Res, Vol. 14, No. 7. (July 2004), pp. 1394-1403.
    by AC Darling, B Mau, FR Blattner, NT Perna
    posted to qual by azazello to the group gatech-compgenomics on 2008-03-25 13:59:11 as ** along with 5 people mariakmejia operon catmat AaronDarling leelarcombe
  • Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis.
    Proc Natl Acad Sci U S A, Vol. 105, No. 9. (4 March 2008), pp. 3473-3478.
    by C Schoen, J Blom, H Claus, A Schramm-Glück, P Brandt, T Müller, A Goesmann, B Joseph, S Konietzny, O Kurzai, C Schmitt, T Friedrich, B Linke, U Vogel, M Frosch
    posted to qual by azazello to the group gatech-compgenomics on 2008-03-24 13:38:46 as ** along with 1 person martainn
  • Whole-genome sequencing and assembly with high-throughput, short-read technologies.
    PLoS ONE, Vol. 2 (2007)
    by A Sundquist, M Ronaghi, H Tang, P Pevzner, S Batzoglou
    posted to qual by azazello to the group gatech-compgenomics on 2008-03-21 15:41:38 as ** along with 2 people jyuh nedwards
  • De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
    Genome Res (10 March 2008)
    by David Hernandez, Patrice Francois, Laurent Farinelli, Magne Osteras, Jacques Schrenzel
    posted to qual by azazello to the group gatech-compgenomics on 2008-03-21 15:40:48 as ** along with 6 people and 2 groups balicea Neeperando jmeppley stajich Katje iris42 microbiology_nijmegen Berkeley Mycology
  • A general approach to single-nucleotide polymorphism discovery.
    Nat Genet, Vol. 23, No. 4. (December 1999), pp. 452-456.
    by GT Marth, I Korf, MD Yandell, RT Yeh, Z Gu, H Zakeri, NO Stitziel, L Hillier, PY Kwok, WR Gish
    posted to qual by azazello to the group gatech-compgenomics on 2008-03-21 15:37:44 as ** along with 2 people gpappas Ayest
  • Two-dimensional granular Poiseuille flow on an incline: Multiple dynamical regimes
    Physical Review E, Vol. 65, No. 1. (19 December 2001), 011306.
    by JC Tsai, W Losert, GA Voth, JP Gollub
    posted to qual jamming flow 2d by ghunter on 2008-04-26 17:34:20 as **
  • Jamming at zero temperature and zero applied stress: The epitome of disorder
    Physical Review E, Vol. 68, No. 1. (25 July 2003), 011306.
    by Corey S O’hern, Leonardo E Silbert, Andrea J Liu, Sidney R Nagel
    posted to qual jamming disorder by ghunter on 2008-04-28 11:49:23 as ** along with 4 people dchen cgguido weeks kdesmond
  • Monolithic Microfabricated Valves and Pumps by Multilayer Soft Lithography
    Science, Vol. 288, No. 5463. (7 April 2000), pp. 113-116.
    by Marc A Unger, Hou-Pu Chou, Todd Thorsen, Axel Scherer, Stephen R Quake
    posted to soft_lithography qual microfluidics by ghunter on 2008-04-29 12:19:19 as ** along with 1 person namin
  • Suspension extraction through an opening before clogging
    Applied Physics Letters, Vol. 85, No. 19. (2004), pp. 4535-4537.
    by Guillermo H Goldsztein, Juan C Santamarina
    posted to qual clogging by ghunter on 2008-04-29 12:17:09 as **
  • BLOOD FLOW IN ARTERIES
    Annual Review of Fluid Mechanics, Vol. 29, No. 1. (1997), pp. 399-434.
    by David N Ku
    posted to qual flow blood by ghunter on 2008-04-28 13:53:00 as **
  • Microfluidics: Fluid physics at the nanoliter scale
    Reviews of Modern Physics, Vol. 77, No. 3. (2005)
    by Todd M Squires, Stephen R Quake
    posted to qual microfluidics by ghunter on 2008-04-29 12:14:59 as ** along with 6 people and 2 groups kristgy eyliu madhadron gane5h dylan77 tathabhatt CFD micro_mixing
  • A constitutive law for dense granular flows
    Nature, Vol. 441, No. 7094. (June 2006), pp. 727-730.
    by Pierre Jop, Yoã«l Forterre, Olivier Pouliquen
    posted to qual granular flow by ghunter on 2008-04-30 18:52:53 as ** along with 2 people kdesmond tathabhatt
  • Direct Flow Visualization of Colloidal Gels in Microfluidic Channels
    Langmuir, Vol. 23, No. 17. (14 August 2007), pp. 8726-8731.
    by MT Roberts, A Mohraz, KT Christensen, JA Lewis
    posted to qual microfluidics gel flow by ghunter on 2008-05-08 22:06:12 as **
  • Three-Dimensional Confocal Microscopy of Colloids
    Appl. Opt., Vol. 40, No. 24. (2001), pp. 4152-4159.
    by AD Dinsmore, Eric R Weeks, Vikram Prasad, Andrew C Levitt, DA Weitz
    posted to qual microscopy confocal colloid by ghunter on 2008-04-28 16:37:27 as **
  • Funneling of Flow into Grain-to-grain Contacts Drives Colloid−Colloid Aggregation in the Presence of an Energy Barrier
    Environ. Sci. Technol., Vol. 42, No. 8. (15 April 2008), pp. 2826-2832.
    by Meiping Tong, Huilian Ma, William P Johnson
    posted to qual flow colloid by ghunter on 2008-04-28 12:00:14 as **
  • Analogies between granular jamming and the liquid-glass transition
    Physical Review E, Vol. 65, No. 5. (21 May 2002), 051307.
    by Leonardo E Silbert, Deniz Ertaş, Gary S Grest, Thomas C Halsey, Dov Levine
    posted to qual jamming glass by ghunter on 2008-04-26 15:40:45 as **
  • Jamming, Force Chains, and Fragile Matter
    Physical Review Letters, Vol. 81, No. 9. (1998), 1841.
    by ME Cates, JP Wittmer, JP Bouchaud, P Claudin
    posted to qual jamming granular by ghunter on 2008-04-27 20:57:39 as ** along with 1 person dchen
  • Structure and distribution of arches in shaken hard sphere deposits
    Physica A: Statistical and Theoretical Physics, Vol. 337, No. 3-4. (15 June 2004), pp. 428-442.
    by Pugnaloni, GC Barker
    posted to simulation qual jamming arches by ghunter on 2008-04-26 15:38:37 as **
  • Jamming phase diagram for attractive particles
    Nature, Vol. 411, No. 6839. (14 June 2001), pp. 772-775.
    by V Trappe, V Prasad, Luca Cipelletti, PN Segre, DA Weitz
    posted to qual particles jamming by ghunter on 2007-04-20 05:24:55 as read along with 2 people and 1 group cgguido weeks WeeksLab
  • Methods of Digital Video Microscopy for Colloidal Studies
    Journal of Colloid and Interface Science, Vol. 179, No. 1. (15 April 1996), pp. 298-310.
    by John C Crocker, David G Grier
    posted to tracking qual colloid by ghunter on 2008-04-28 16:34:55 as ** along with 3 people cgguido kedmond weeks
  • On flow-blocking particle structures in microtubes
    Microfluidics and Nanofluidics, Vol. 1, No. 4. (17 October 2005), pp. 376-380.
    by K Sharp, R Adrian
    posted to qual microfluidics jamming flow by ghunter on 2008-04-25 20:10:28 as **
  • Monodisperse Double Emulsions Generated from a Microcapillary Device
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 537-541.
    by AS Utada, E Lorenceau, DR Link, PD Kaplan, HA Stone, DA Weitz
    posted to qual microfluidics emulsion by ghunter on 2008-04-26 18:30:53 as ** along with 1 person dchen
  • Analytical Approach to Continuous and Intermittent Bottleneck Flows
    Physical Review Letters, Vol. 97, No. 16. (2006)
    by Dirk Helbing, Anders Johansson, Joachim Mathiesen, Mogens H Jensen, Alex Hansen
    posted to qual jamming flow by ghunter on 2008-04-26 15:31:10 as **
  • Deposition of Colloidal Asphaltene in Capillary Flow: Experiments and Mesoscopic Simulation
    Energy Fuels, Vol. 22, No. 2. (19 March 2008), pp. 805-813.
    by Edo S Boek, Hemant K Ladva, John P Crawshaw, Johan T Padding
    posted to qual flow colloid by ghunter on 2008-04-28 12:22:44 as **
  • Continuous Particle Separation Through Deterministic Lateral Displacement
    Science, Vol. 304, No. 5673. (14 May 2004), pp. 987-990.
    by Lotien R Huang, Edward C Cox, Robert H Austin, James C Sturm
    posted to separation qual microfluidics by ghunter on 2008-04-29 11:53:10 as ** along with 2 people kedmond weeks
  • Flow and jam of granular particles in a two-dimensional hopper
    Physica A: Statistical Mechanics and its Applications, Vol. 315, No. 1-2. (15 November 2002), pp. 174-180.
    by Kiwing To, Pik-Yin Lai, HK Pak
    posted to qual jamming hopper flow 2d by ghunter on 2008-04-25 20:03:52 as **
  • Flow and jamming of granular mixtures through obstacles
    EPL (Europhysics Letters), Vol. 79, No. 1. (2007), 14001.
    by F Chevoir, F Gaulard, N Roussel
    posted to qual jamming granular flow by ghunter on 2008-04-26 15:29:16 as **
  • Designing Constricted Microchannels To Selectively Entrap Soft Particles
    Macromolecules, Vol. 40, No. 14. (10 July 2007), pp. 5176-5181.
    by G Zhu, A Alexeev, AC Balazs
    posted to qual microfluidics clogging by ghunter on 2008-04-29 12:29:06 as **
  • Dilatant Flow of Concentrated Suspensions of Rough Particles
    Physical Review Letters, Vol. 95, No. 26. (2005)
    by Didier Lootens, Henri van Damme, Yacine Hémar, Pascal Hébraud
    posted to qual jamming flow by ghunter on 2008-04-26 15:15:29 as ** along with 1 person kdesmond
  • Designer emulsions using microfluidics
    Materials Today, Vol. 11, No. 4. (April 2008), pp. 18-27.
    by Rhutesh K Shah, Ho C Shum, Amy C Rowat, Daeyeon Lee, Jeremy J Agresti, Andrew S Utada, Liang-Yin Chu, Jin-Woong Kim, Alberto Fernandez-Nieves, Carlos J Martinez, David A Weitz
    posted to qual microfluidics emulsion by ghunter on 2008-04-29 12:27:01 as **
  • Microfluidic chip for blood cell separation and collection based on crossflow filtration
    Sensors and Actuators B: Chemical, Vol. 130, No. 1. (14 March 2008), pp. 216-221.
    by Xing Chen, Da F Cui, Chang C Liu, Hui Li
    posted to qual microfluidics jamming flow by ghunter on 2008-04-26 15:11:15 as **
  • From Micro- to Nanofabrication with Soft Materials
    Science, Vol. 290, No. 5496. (24 November 2000), pp. 1536-1540.
    by Stephen R Quake, Axel Scherer
    posted to qual microfluidics by ghunter on 2008-04-29 11:44:34 as ** along with 3 people dchen dna weeks
  • Jamming pattern in a two-dimensional hopper
    Physical Review E, Vol. 66, No. 1. (29 July 2002), 011308.
    by Kiwing To, Pik-Yin Lai
    posted to qual jamming hopper 2d by ghunter on 2008-04-25 19:55:08 as **
  • Flow, Ordering, and Jamming of Sheared Granular Suspensions
    Physical Review Letters, Vol. 100, No. 7. (2008)
    by Denis S Grebenkov, Massimo P Ciamarra, Mario Nicodemi, Antonio Coniglio
    posted to simulation qual jamming granular flow by ghunter on 2008-04-26 15:09:50 as ** along with 1 person kdesmond
  • Jamming Transition in Granular Systems
    Physical Review Letters, Vol. 98, No. 5. (2007)
    by TS Majmudar, M Sperl, S Luding, RP Behringer
    posted to qual jamming granular by ghunter on 2008-04-28 11:50:33 as ** along with 2 people dchen kdesmond
  • Jamming, Two-Fluid Behavior, and “Self-Filtration” in Concentrated Particulate Suspensions
    Physical Review Letters, Vol. 92, No. 18. (2004)
    by MD Haw
    posted to qualifier qual jamming colloids by ghunter on 2008-04-07 12:51:52 as ** along with 1 person weeks
  • Jamming of Granular Flow in a Two-Dimensional Hopper
    Physical Review Letters, Vol. 86, No. 1. (1 January 2001), 71.
    by Kiwing To, Pik-Yin Lai, HK Pak
    posted to qual hopper flow 2d by ghunter on 2008-04-25 19:53:28 as ** along with 2 people dchen weeks
  • Mechanism for clogging of microchannels
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 74, No. 6. (2006)
    by Hans M Wyss, Daniel L Blair, Jeffrey F Morris, Howard A Stone, David A Weitz
    posted to qual microfluidics jamming flow by ghunter on 2008-04-29 11:42:49 as ** along with 2 people dchen weeks
  • Confocal microscopy of colloidal particles: Towards reliable, optimum coordinates
    Advances in Colloid and Interface Science, Vol. 136, No. 1-2. (15 January 2008), pp. 65-92.
    by MC Jenkins, SU Egelhaaf
    posted to qual microscopy colloid by ghunter on 2008-04-26 15:07:05 as ** along with 2 people kedmond weeks
  • Shear-induced particle migration in binary colloidal suspensions
    Physics of Fluids, Vol. 20, No. 4. (2008)
    by Denis Semwogerere, Eric R Weeks
    posted to shear qual migration jamming binary by ghunter on 2008-04-26 15:01:08 as ** along with 1 person weeks
  • Dilatancy, jamming, and the physics of granulation
    Journal of Physics: Condensed Matter, Vol. 17, No. 24. (2005), pp. S2517-S2531.
    by ME Cates, MD Haw, CB Holmes
    posted to qual jamming by ghunter on 2008-05-08 22:10:21 as **
  • Relaxation of jammed colloidal suspensions after shear cessation
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 74, No. 1. (2006)
    by Francesca Ianni, David Lasne, Régis Sarcia, Pascal Hébraud
    posted to shear qual jamming by ghunter on 2008-05-08 22:08:51 as **
  • Shear Zones and Wall Slip in the Capillary Flow of Concentrated Colloidal Suspensions
    Physical Review Letters, Vol. 98, No. 19. (2007)
    by Lucio Isa, Rut Besseling, Wilson CK Poon
    posted to shear qual microfluidics flow colloid by ghunter on 2008-05-08 22:07:50 as **
  • Jamming Transition and New Percolation Universality Classes in Particulate Systems with Attraction
    Physical Review Letters, Vol. 100, No. 2. (2008)
    by Gregg Lois, Jerzy Blawzdziewicz, Corey S O'Hern
    posted to simulation qualifier qual packing jamming by ghunter on 2008-03-19 11:14:51 as ** along with 1 person dchen
  • Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?
    Genome Biology, Vol. 8 (12 February 2007), R20.
    by Caroline Deshayes, Emmanuel Perrodou, Sebastien Gallien, Daniel Euphrasie, Christine Schaeffer, Alain Van-Dorsselaer, Olivier Poch, Odile Lecompte, Jean-Marc Reyrat
    posted to frameshift qual by azazello on 2007-03-12 20:55:30 as ** along with 2 people and 1 group alexl nitiniitk MBLAB
  • MEGAN analysis of metagenomic data.
    Genome Res, Vol. 17, No. 3. (March 2007), pp. 377-386.
    by DH Huson, AF Auch, J Qi, SC Schuster
    posted to qual by azazello on 2008-03-21 19:04:02 as ** along with 2 people carpi wenhan
  • CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads
    ArXiv e-prints, Vol. 708 (August 2007)
    by S Chatterji, I Yamazaki, Z Bai, J Eisen
    posted to qual by azazello on 2008-03-21 17:56:17 as **
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to qual by azazello on 2008-03-15 18:24:08 as ** along with 9 people and 4 groups ana nickluscombe michC bluto agg19954 TaqSys Thaverkamp larsjuhljensen rvgomes structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology
  • Comparative Metagenomics of Microbial Communities
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
    posted to qual by azazello on 2008-03-24 17:41:50 as ** along with 5 people bluto jmeppley AaronDarling wenhan sgoetz
  • The greedy path-merging algorithm for contig scaffolding
    J. ACM, Vol. 49, No. 5. (September 2002), pp. 603-615.
    by Daniel H Huson, Knut Reinert, Eugene W Myers
    posted to qual by azazello on 2008-03-24 02:17:58 as ** along with 1 person and 1 group tpreeprem gatech-compgenomics
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