Tag read-mapping [26 articles] Export Sort

Recent papers classified by the tag read-mapping.

Hide details

	How to map billions of short reads onto genomes. [My Copy] Nature biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to sequencing read-mapping by frohike on 2009-12-11 22:57:16 as along with 32 people and 5 groups michaelbarton agbiotec burak cthachuk hzoltan tonamswish heliopais giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 24. (15 December 2009), pp. 3207-3212. by Jacob F. Degner, John C. Marioni, Athma A. Pai, et al.Joseph K. Pickrell, Everlyne Nkadori, Yoav Gilad, Jonathan K. Pritchard posted to read-mapping biases by chvlyl on 2009-12-05 09:12:43 as along with 10 people and 2 groups jherrero68 djkt jperkins humburg dakelley natstreet n00c papamicd torfinnnome heliopais Journal picks Orengo Group Journal Picks
	MOM: maximum oligonucleotide mapping [My Copy] Bioinformatics, Vol. 25, No. 7. (19 February 2009), pp. 969-970. by Hugh L. Eaves, Yuan Gao posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-30 17:49:52 as along with 9 people Julien_Fayolle seb1 jfr n00c cassj rschulz mmartin guhjy druvus
	PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds [My Copy] Bioinformatics, Vol. 25, No. 19. (19 August 2009), pp. 2514-2521. by Yangho Chen, Tade Souaiaia, Ting Chen posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-30 17:46:45 as along with 10 people and 1 group Julien_Fayolle darian dswan operon fishtank polivares n00c torfinnnome druvus natstreet BergmanLab
	SHREC: a short-read error correction method [My Copy] Bioinformatics, Vol. 25, No. 17. (19 June 2009), pp. 2157-2163. by Jan Schroder, Heiko Schroder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt posted to shrec read-mapping high-throughput-sequencing error-correction by heliopais on 2009-11-26 13:31:06 as along with 14 people and 1 group claire_jubin adthrasher dakelley skembel thegoose katholt sotacam djkt rtogawa torfinnnome natstreet druvus n00c jmeppley Journal picks
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-19 15:33:40 as along with 40 people and 2 groups claire_jubin urgi seninp hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	BreakDancer: an algorithm for high-resolution mapping of genomic structural variation [My Copy] Nature Methods, Vol. 6, No. 9. (09 August 2009), pp. 677-681. by Ken Chen, John W. Wallis, Michael D. McLellan, et al.David E. Larson, Joelle M. Kalicki, Craig S. Pohl, Sean D. McGrath, Michael C. Wendl, Qunyuan Zhang, Devin P. Locke, Xiaoqi Shi, Robert S. Fulton, Timothy J. Ley, Richard K. Wilson, Li Ding, Elaine R. Mardis posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-19 15:00:57 as along with 13 people and 1 group n00c Leaflet stubrown dakelley fenghezi daed natstreet druvus sitalange qayub gdb jasontsai danmaclean Journal picks
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Computational Biology, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to shrimp read-mapping high-throughput-sequencing by heliopais on 2009-11-19 13:50:04 as along with 23 people and 4 groups idonaldson jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew farhat humburg kshameer operon stajich GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Mycology Journal picks Bioinformatics
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-02 13:55:15 as along with 16 people and 3 groups humburg hzoltan Peiyong darian seb1 mkiyer dakelley djkt PabloMarin guhjy n00c orzenil natstreet druvus stajich malcook Journal picks Mycology SIMR bioinformatics
	The Sequence Alignment/Map format and SAMtools. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (8 June 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-02 13:52:57 as along with 29 people and 2 groups MarkFiers n00c darian cthachuk hzoltan seb1 urgi idonaldson GustavoLacerda stubrown cassj kshameer ciax polivares carlosjavierna jandot katholt jmcq guhjy orzenil jasontsai operon farhat AlexBateman chrisamiller nuin natstreet sandfire druvus BergmanLab Journal picks
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-02 13:48:14 as along with 27 people and 2 groups idonaldson ongenetics juokcho cthachuk hzoltan jwfoley dakelley druvus GustavoLacerda stubrown polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto n00c ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr BergmanLab SIMR bioinformatics
	inGAP: an integrated next-generation genome analysis pipeline [My Copy] Bioinformatics, Vol. 26, No. 1. (1 January 2010), pp. 127-129. by Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster posted to snp read-mapping high-throughput-sequencing by heliopais on 2009-11-02 09:00:35 as along with 5 people and 1 group jforment jasontsai natstreet n00c druvus Bioinformatics Core Service
	The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing [My Copy] Bioinformatics, Vol. 26, No. 1. (1 January 2010), pp. 38-45. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to read-mapping high-throughput-sequencing by heliopais on 2009-10-30 09:39:24 as along with 6 people kshameer claire_jubin darian operon n00c druvus
	MicroRazerS: Rapid alignment of small RNA reads [My Copy] Bioinformatics (29 October 2009), btp601. by Anne-Katrin Emde, Marcel Grunert, David Weese, Knut Reinert, Silke R. Sperling posted to read-mapping high-throughput-sequencing by heliopais on 2009-10-30 09:12:13 as along with 2 people n00c druvus
	RazerS--fast read mapping with sensitivity control. [My Copy] Genome research, Vol. 19, No. 9. (10 September 2009), pp. 1646-1654. by David Weese, Anne-Katrin K. Emde, Tobias Rausch, Andreas Döring, Knut Reinert posted to read-mapping solexa by heliopais on 2009-09-22 16:45:45 as along with 6 people and 1 group torfinnnome jandot n00c reyez druvus natstreet Journal picks
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted to read-mapping solexa by heliopais on 2009-09-22 16:44:43 as along with 33 people and 2 groups joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson rschulz dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus neils KCL & UCL Bioinformatics Bioinformatics
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to solexa read-mapping high-throughput-sequencing by heliopais on 2009-09-22 16:41:57 as along with 35 people and 4 groups urgi agbiotec lianping hzoltan cthachuk maren bozdagd adijr jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	PASS: a program to align short sequences [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 967-968. by Davide Campagna, Alessandro Albiero, Alessandra Bilardi, et al.Elisa Caniato, Claudio Forcato, Svetlin Manavski, Nicola Vitulo, Giorgio Valle posted to read-mapping solexa by heliopais on 2009-09-22 16:40:41 as along with 20 people and 1 group Julien_Fayolle cthachuk hzoltan seb1 bozdagd adijr darian maren n00c nuin skembel cassj Neeperando helminth_lab rschulz guhjy natstreet druvus renatomilani WanderingAengus iSEEM
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to read-mapping high-throughput-sequencing by heliopais on 2009-09-11 16:29:54 as along with 22 people and 1 group humburg darian orzenil hzoltan chvlyl operon kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor sotacam torfinnnome walshtp jandot n00c rschulz druvus Journal picks
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to read-mapping high-throughput-sequencing by heliopais on 2009-09-11 12:56:49 as along with 20 people and 4 groups humburg cthachuk hzoltan darian nuin fenghezi behindtherabbit jandot walshtp torfinnnome stubrown dswan polivares orzenil natstreet djkt jmcq n00c ppgardne druvus Bioinformatics BergmanLab iSEEM Journal picks
	ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1424-1425. by You Jung Kim, Nikhil Teletia, Victor Ruotti, et al.Christopher A. Maher, Arul M. Chinnaiyan, Ron Stewart, James A. Thomson, Jignesh M. Patel posted to alignment read-mapping by mmartin on 2009-06-09 09:30:28 as along with 14 people and 2 groups bsamal Julien_Fayolle jfr n00c guhjy nuin idonaldson AlexBateman bmajoros humburg Thaverkamp druvus svenrahmann djkt Bioinformatics Journal picks
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to mapping read-mapping sequence-alignment string-indexing by mmartin on 2009-04-24 16:17:45 as along with 39 people and 4 groups oannes mijam nuin jfr hzoltan cthachuk darshan fstrozzi adijr debasis bozdagd polivares torfinnnome n00c talponer jmcq rschulz ghattem operon humburg idonaldson skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis [My Copy] Cell, Vol. 133, No. 3. (2 May 2008), pp. 523-536. by Ryan Lister, Ronan C. O'Malley, Julian Tonti-Filippini, et al.Brian D. Gregory, Charles C. Berry, Harvey A. Millar, Joseph R. Ecker posted to bisulfite methylation read-mapping solexa by mmartin on 2009-04-06 09:37:25 as along with 7 people natstreet kengg caseybrown megraw GeeSharpMinor jmjimenez gdb
	Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [My Copy] Nature, Vol. 452, No. 7184. (17 February 2008), pp. 215-219. by Shawn J. Cokus, Suhua Feng, Xiaoyu Zhang, et al.Zugen Chen, Barry Merriman, Christian D. Haudenschild, Sriharsa Pradhan, Stanley F. Nelson, Matteo Pellegrini, Steven E. Jacobsen posted to bisulfite methylation read-mapping solexa by mmartin on 2009-04-06 09:06:43 as along with 15 people and 1 group druvus darian iamlily1046 ychang0918 rschulz natstreet iris42 hkuhn kengg usagi-kirin djkt ghattem epigenetics mdimon slonik KCL & UCL Bioinformatics
	SeqMap : mapping massive amount of oligonucleotides to the genome. [My Copy] Bioinformatics, Vol. 24, No. 20. (12 August 2008), pp. 2395-2396. by Hui Jiang, Wing posted to read-mapping by heliopais on 2008-10-06 15:33:42 as along with 1 person guhjy
	Using quality scores and longer reads improves accuracy of Solexa read mapping [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 February 2008), 128. by Andrew Smith, Zhenyu Xuan, Michael Zhang posted to read-mapping solexa by heliopais on 2008-06-05 16:08:33 as along with 19 people humburg hzoltan seb1 bozdagd katholt inesdesantiago n00c maren floatingpoint lukaswindhager natstreet druvus jfr pengchy farhat ghattem mdimon kmdaily caseybrown

Note: You may cite this page as: http://www.citeulike.org/tag/read-mapping

Sort by:
Order:	Default Ascending Descending
Empty fields:	Default First Last

high-throughput-sequencing	16
solexa	8
bisulfite	3
methylation	3
mapping	2
sequence-alignment	2
string-indexing	2
alignment	1
biases	1
error-correction	1
review	1
sequencing	1
shrec	1
shrimp	1
snp	1

Tag read-mapping [26 articles] Export Sort

Related Tags